Aug 17, 2018 4:32 PM
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SeedGenes Profile: AtVPS 9A
Gene Information
Gene Symbol
AtVPS 9A
Chromosome Locus
At3g19770
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
Gene Class
Embryo Defective
Predicted Function
Rab5 Guanine Exchange Factor
Function Details
Proposed role in endocytosis; regulator of Rab5 GTPase
Gene Evidence
Molecular Complementation
A. Nakano (1 allele)
Database Release
October, 2007
Predicted Sequences
Gene:
2670 nucleotides
mRNA:
2034 nucleotides
Protein:
520 amino acids
cDNA Status
FLcDNA Available:
AY045810
Top BLAST Hits
Arabidopsis
:
AT5G09320.1 (73%)
Plant ESTs:
Nicotiana tabacum (63%)
Model Genomes:
Schizosaccharomyces pombe (34%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
257989_at
Mutant Information
Allele Symbol
atvps 9a-1
Mutant Class
Embryo Defective
Source of Mutant
A. Nakano
Mutant Line Number
Ecotype
Genetic Background
ABRC Stock
Mutagen Treatment
null
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Terminal Phenotype
Cotyledon
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
October, 2007
Seed Color
Embryo Color
Percent Mutant Seeds
Chi - Square
Seeds Counted
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length