Aug 17, 2018 4:32 PM
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Database Query
SeedGenes Profile: COP 1
Gene Information
Gene Symbol
COP 1
Chromosome Locus
At2g32950
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
FUS 1
(S. Misera) Complemetation Test
EMB 168
(D. Meinke) Alternate Name
Gene Class
Seed Pigment
Predicted Function
Nuclear Protein that Represses Photomorphogenesis in the Dark
Function Details
Targets HY5 protein for degradation via the 26S proteasome in the dark
Gene Evidence
Molecular Complementation
X.W. Deng (1 allele)
Border Recovery
X.W. Deng (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
5603 nucleotides
mRNA:
2348 nucleotides
Protein:
675 amino acids
cDNA Status
FLcDNA Available:
L24437
Top BLAST Hits
Arabidopsis
:
AT4G11110.1 (48%)
Plant ESTs:
Vitis vinifera (74%)
Model Genomes:
Danio rerio (39%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
267640_at
Mutant Information
Allele Symbol
cop 1-5
Mutant Class
Seed Pigment
Source of Mutant
Deng / Feldmann
Mutant Line Number
5959
Ecotype
Wassilewskija
Genetic Background
ABRC Stock
CS6259
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 8
Terminal Phenotype
Fusca
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
Fusca
Embryo Color
Fusca
Percent Mutant Seeds
25.3 %
Chi - Square
<0.1
Seeds Counted
1197
Percent Top Half
51.2 %
Chi - Square
0.2
Average Seed Length
Average Embryo Length