Aug 17, 2018 4:33 PM
Home
|
Access Page
|
Database Query
SeedGenes Profile: EMB 2107
Gene Information
Gene Symbol
EMB 2107
Chromosome Locus
At5g09900
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
RPN 5A
(R. Vierstra) Sequence Identity
MSA
(P. Jenik) Sequence Identity
Gene Class
Embryo Defective
Predicted Function
26S Proteasome Regulatory Subunit (RPN5)
Function Details
Component of 26S proteasome lid
Gene Evidence
Border Recovery
Meinke / Syngenta (1 allele)
Database Release
September, 2002
Predicted Sequences
Gene:
3318 nucleotides
mRNA:
1674 nucleotides
Protein:
442 amino acids
cDNA Status
FLcDNA Available:
AY034908
Top BLAST Hits
Arabidopsis
:
AT5G64760.1 (92%)
Plant ESTs:
Brassica napus (95%)
Model Genomes:
Danio rerio (44%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
250456_at
Mutant Information
Allele Symbol
emb 2107
Mutant Class
Embryo Defective
Source of Mutant
Meinke / Syngenta
Mutant Line Number
58351
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16129
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Terminal Phenotype
Cotyledon
Details
Nomarski Phenotype
Images
Allelism Evidence
Reference Allele
Database Release
September, 2002
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
24.9 %
Chi - Square
<0.1
Seeds Counted
967
Percent Top Half
53.5 %
Chi - Square
1.2
Average Seed Length
520 ± 60 µm
Average Embryo Length
300 ± 90 µm