Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: EMB 2779
Gene Information
Gene Symbol
EMB 2779
Chromosome Locus
At4g36480
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
LCB 1
(TAIR) Alternate Name
FBR 11
(J. Zuo) Sequence Identity
Gene Class
Embryo Defective
Predicted Function
Serine Palmitoyltransferase (LCB1 Subunit)
Function Details
Catalyzes the first step of sphingolipid biosynthesis
Gene Evidence
Single Border Recovery
Meinke / Salk (1 allele)
Database Release
October, 2007
Predicted Sequences
Gene:
3346 nucleotides
mRNA:
2058 nucleotides
Protein:
482 amino acids
cDNA Status
FLcDNA Available:
AY120759
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Medicago truncatula (75%)
Model Genomes:
Homo sapiens (44%)
Subcellular Localization
TargetP
Targeted to Secretory Pathway
SUBA
mRNA Expression Data
NASCArray Spot History for
246213_at
Mutant Information
Allele Symbol
emb 2779
Mutant Class
Embryo Defective
Source of Mutant
Meinke / Salk
Mutant Line Number
SALK_077745
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 2
Terminal Phenotype
Preglobular
Details
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
October, 2007
Seed Color
White
Embryo Color
White
Percent Mutant Seeds
22.0 %
Chi - Square
5.1
Seeds Counted
1068
Percent Top Half
61.7 %
Chi - Square
12.9
Average Seed Length
480 ± 60 µm
Average Embryo Length
15 ± 0 µm