OSU Syngenta vbi

SeedGenes Profile: EMB 2790

Gene Information
Gene Symbol EMB 2790
Chromosome Locus At5g56290   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function Peroxisome Targeting
Function Details Peroxisomal protein translocation
Gene Evidence
Border Recovery
Meinke / Salk (2 alleles)
Database Release December, 2010
Predicted Sequences
Gene:5656 nucleotides
mRNA: 2525 nucleotides
Protein:  728 amino acids
cDNA Status FLcDNA Available: AY056299
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (93%)
Model Genomes:  Homo sapiens (34%)
Subcellular Localization TargetP Targeted to Chloroplasts
mRNA Expression Data NASCArray Spot History for 248010_at
Mutant Information
Allele Symbol emb 2790-1
Mutant Class Embryo Defective
Source of Mutant Meinke / Salk
Mutant Line Number SALK_018579
Ecotype Columbia
Genetic Background  
ABRC Stock  
Mutagen Treatment T-DNA
Insertion Mutant Yes   Details
Flanking Sequence  
Location of Mutation Exon 12
Terminal Phenotype Preglobular  Details
Nomarski Phenotype   Images
Allelism Evidence Reference Allele
Database Release December, 2010
Seed Color Pale Yellow
Embryo Color Pale Yellow
Percent Mutant Seeds 17.4 %
Chi - Square 9.8
Seeds Counted 321
Percent Top Half 57.1 %
Chi - Square 1.1
Average Seed Length 360 ± 140 µm
Average Embryo Length 50 ± 60 µm