Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: PDE 326
Gene Information
Gene Symbol
PDE 326
Chromosome Locus
At3g03710
Alleles in Database
4
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
RIF 10
(M. Rodgriguez-C) Sequence Identity
Gene Class
Seed Pigment
Predicted Function
Plastid Polynucleotide Phosphorylase
Function Details
Proposed role in 23S rRNA 3' end processing
Gene Evidence
Border Recovery
Meinke / Salk (2 alleles)
Border Recovery
Rodriguez-Concepcion / Weigel (1 allele)
Border Recovery
Rodriguez-Concepcion / Salk (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
5797 nucleotides
mRNA:
3103 nucleotides
Protein:
922 amino acids
cDNA Status
FLcDNA Available:
AJ252123
Top BLAST Hits
Arabidopsis
:
AT5G14580.1 (42%)
Plant ESTs:
Rice (Oryza sativa) (73%)
Model Genomes:
Escherichia coli (40%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
259344_at
Mutant Information
Allele Symbol
pde 326-2
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Salk
Mutant Line Number
SALK_037353
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Intron 5
Terminal Phenotype
Pigment Defective
Details
Nomarski Phenotype
Allelism Evidence
Complementation Test; Sequence Identity
Database Release
December, 2010
Seed Color
Pale Green
Embryo Color
Pale Green
Percent Mutant Seeds
27.9 %
Chi - Square
1.0
Seeds Counted
222
Percent Top Half
59.7 %
Chi - Square
2.3
Average Seed Length
550 ± 0 µm
Average Embryo Length
400 ± 0 µm