SeedGenes Profile: PDE 328

Gene Information Gene Symbol PDE 328 Chromosome Locus At2g39140   Alleles in Database 1 Identity Confidence Confirmed Alias Symbol SVR 1 (S. Rodermel) Alternate Name Gene Class Seed Pigment Predicted Function Pseudouridine Synthase; RNA binding Function Details RNA modification Gene Evidence Experimental Data S. Rodermel (1 allele) Border Recovery Meinke / Salk (1 allele) Database Release December, 2010 Predicted Sequences Gene: 3178 nucleotides mRNA: 1495 nucleotides Protein:   410 amino acids cDNA Status FLcDNA Available: AK117682 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (83%) Model Genomes:   None Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 267017_at

Mutant Information Allele Symbol pde 328 Mutant Class Seed Pigment Source of Mutant Meinke / Salk Mutant Line Number SALK_013085 Ecotype Columbia Genetic Background   ABRC Stock   Mutagen Treatment T-DNA Insertion Mutant Yes   Details Flanking Sequence   Location of Mutation Exon 1 Terminal Phenotype Pigment Defective  Details Nomarski Phenotype   Allelism Evidence Reference Allele Database Release December, 2010 Seed Color Pale Yellow Embryo Color Pale Yellow Percent Mutant Seeds 21.5 % Chi - Square 2.4 Seeds Counted 363 Percent Top Half 55.1 % Chi - Square 0.8 Average Seed Length 550 ± 0 µm Average Embryo Length 500 ± 0 µm