Aug 17, 2018 4:34 PM
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SeedGenes Profile: PDE 328
Gene Information
Gene Symbol
PDE 328
Chromosome Locus
At2g39140
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
SVR 1
(S. Rodermel) Alternate Name
Gene Class
Seed Pigment
Predicted Function
Pseudouridine Synthase; RNA binding
Function Details
RNA modification
Gene Evidence
Experimental Data
S. Rodermel (1 allele)
Border Recovery
Meinke / Salk (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
3178 nucleotides
mRNA:
1495 nucleotides
Protein:
410 amino acids
cDNA Status
FLcDNA Available:
AK117682
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (83%)
Model Genomes:
None
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
267017_at
Mutant Information
Allele Symbol
pde 328
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Salk
Mutant Line Number
SALK_013085
Ecotype
Columbia
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Details
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
December, 2010
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
21.5 %
Chi - Square
2.4
Seeds Counted
363
Percent Top Half
55.1 %
Chi - Square
0.8
Average Seed Length
550 ± 0 µm
Average Embryo Length
500 ± 0 µm