OSU Syngenta vbi

SeedGenes Profile: PDE 328

Gene Information
Gene Symbol PDE 328
Chromosome Locus At2g39140   tair
Alleles in Database 1
Identity Confidence Confirmed
Alias Symbol SVR 1 (S. Rodermel) Alternate Name
Gene Class Seed Pigment
Predicted Function Pseudouridine Synthase; RNA binding
Function Details RNA modification
Gene Evidence
Experimental Data
S. Rodermel (1 allele)
Border Recovery
Meinke / Salk (1 allele)
Database Release December, 2010
Predicted Sequences
Gene:3178 nucleotides
mRNA: 1495 nucleotides
Protein:  410 amino acids
cDNA Status FLcDNA Available: AK117682
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (83%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Chloroplasts
mRNA Expression Data NASCArray Spot History for 267017_at
Mutant Information
Allele Symbol pde 328
Mutant Class Seed Pigment
Source of Mutant Meinke / Salk
Mutant Line Number SALK_013085
Ecotype Columbia
Genetic Background  
ABRC Stock  
Mutagen Treatment T-DNA
Insertion Mutant Yes   Details
Flanking Sequence  
Location of Mutation Exon 1
Terminal Phenotype Pigment Defective  Details
Nomarski Phenotype  
Allelism Evidence Reference Allele
Database Release December, 2010
Seed Color Pale Yellow
Embryo Color Pale Yellow
Percent Mutant Seeds 21.5 %
Chi - Square 2.4
Seeds Counted 363
Percent Top Half 55.1 %
Chi - Square 0.8
Average Seed Length 550 ± 0 µm
Average Embryo Length 500 ± 0 µm