Aug 17, 2018 4:34 PM
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SeedGenes Profile: PDE 330
Gene Information
Gene Symbol
PDE 330
Chromosome Locus
At1g20110
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Zinc Finger Protein
Function Details
Putative transcriptional regulator
Gene Evidence
Border Recovery
Myouga / Riken (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
3351 nucleotides
mRNA:
2132 nucleotides
Protein:
601 amino acids
cDNA Status
FLcDNA Available:
AF367315
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (87%)
Model Genomes:
None
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
261231_at
Mutant Information
Allele Symbol
pde 330
Mutant Class
Seed Pigment
Source of Mutant
Myouga / Riken
Mutant Line Number
RATM15-1960-1
Ecotype
Nossen
Genetic Background
ABRC Stock
Mutagen Treatment
Transposon
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
25.7 %
Chi - Square
0.2
Seeds Counted
657
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length