Aug 17, 2018 4:34 PM
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SeedGenes Profile: PDE 336
Gene Information
Gene Symbol
PDE 336
Chromosome Locus
At5g09790
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
SET-Domain Protein (ATXR5)
Function Details
Putative histone methyltransferase
Gene Evidence
Border Recovery
Myouga / JIC (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
1990 nucleotides
mRNA:
1363 nucleotides
Protein:
379 amino acids
cDNA Status
FLcDNA Available:
AY064131
Top BLAST Hits
Arabidopsis
:
AT5G24330.1 (60%)
Plant ESTs:
Populus (67%)
Model Genomes:
None
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
250492_at
Mutant Information
Allele Symbol
pde 336
Mutant Class
Seed Pigment
Source of Mutant
Myouga / JIC
Mutant Line Number
GT_5_43118
Ecotype
Landsberg erecta
Genetic Background
ABRC Stock
Mutagen Treatment
Transposon
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
26.7 %
Chi - Square
0.8
Seeds Counted
528
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length