Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: PDE 339
Gene Information
Gene Symbol
PDE 339
Chromosome Locus
At1g76620
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Unknown
Function Details
None
Gene Evidence
Border Recovery
Myouga / CSHL (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
2777 nucleotides
mRNA:
2016 nucleotides
Protein:
527 amino acids
cDNA Status
FLcDNA Available:
AK227157
Top BLAST Hits
Arabidopsis
:
AT1G21060.1 (60%)
Plant ESTs:
Brassica napus (80%)
Model Genomes:
None
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
259985_at
Mutant Information
Allele Symbol
pde 339
Mutant Class
Seed Pigment
Source of Mutant
Myouga / CSHL
Mutant Line Number
CSHL_ET8371
Ecotype
Landsberg erecta
Genetic Background
ABRC Stock
Mutagen Treatment
Transposon
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 4
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
37.3 %
Chi - Square
20.0
Seeds Counted
241
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length