SeedGenes Profile: PDE 340

Gene Information Gene Symbol PDE 340 Chromosome Locus At5g08610   Alleles in Database 1 Identity Confidence Not Confirmed Alias Symbol   Gene Class Seed Pigment Predicted Function DEAD Box RNA Helicase Function Details None Gene Evidence Border Recovery Myouga / Riken (1 allele) Database Release December, 2010 Predicted Sequences Gene: 3921 nucleotides mRNA: 2755 nucleotides Protein:   850 amino acids cDNA Status EST Identified Top BLAST Hits Arabidopsis: AT5G08620.1 (88%) Plant ESTs: Vitis vinifera (79%) Model Genomes:   Neurospora crassa (36%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 250529_at

Mutant Information Allele Symbol pde 340 Mutant Class Seed Pigment Source of Mutant Myouga / Riken Mutant Line Number RATM15-2572-1 Ecotype Nossen Genetic Background   ABRC Stock   Mutagen Treatment Transposon Insertion Mutant Yes   Details Flanking Sequence   Location of Mutation Exon 1 Terminal Phenotype Pigment Defective Nomarski Phenotype   Allelism Evidence Reference Allele Database Release December, 2010 Seed Color   Embryo Color   Percent Mutant Seeds 22.4 % Chi - Square 2.0 Seeds Counted 519 Percent Top Half   Chi - Square   Average Seed Length   Average Embryo Length