Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: PDE 340
Gene Information
Gene Symbol
PDE 340
Chromosome Locus
At5g08610
Alleles in Database
1
Identity Confidence
Not Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
DEAD Box RNA Helicase
Function Details
None
Gene Evidence
Border Recovery
Myouga / Riken (1 allele)
Database Release
December, 2010
Predicted Sequences
Gene:
3921 nucleotides
mRNA:
2755 nucleotides
Protein:
850 amino acids
cDNA Status
EST Identified
Top BLAST Hits
Arabidopsis
:
AT5G08620.1 (88%)
Plant ESTs:
Vitis vinifera (79%)
Model Genomes:
Neurospora crassa (36%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
250529_at
Mutant Information
Allele Symbol
pde 340
Mutant Class
Seed Pigment
Source of Mutant
Myouga / Riken
Mutant Line Number
RATM15-2572-1
Ecotype
Nossen
Genetic Background
ABRC Stock
Mutagen Treatment
Transposon
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
December, 2010
Seed Color
Embryo Color
Percent Mutant Seeds
22.4 %
Chi - Square
2.0
Seeds Counted
519
Percent Top Half
Chi - Square
Average Seed Length
Average Embryo Length