Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: PDS 1
Gene Information
Gene Symbol
PDS 1
Chromosome Locus
At1g06570
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
p-Hydroxyphenylpyruvate Dioxygenase
Function Details
First committed step in synthesis of plastoquinone and tocopherols
Gene Evidence
Sequenced Mutant Allele
D. DellaPenna (1 allele)
Molecular Complementation
D. DellaPenna (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
1661 nucleotides
mRNA:
1554 nucleotides
Protein:
473 amino acids
cDNA Status
FLcDNA Available:
AF000228
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (87%)
Model Genomes:
Neurospora crassa (36%)
Subcellular Localization
TargetP
Targeted to Mitochondria
SUBA
mRNA Expression Data
NASCArray Spot History for
262635_at
Mutant Information
Allele Symbol
pds 1
Mutant Class
Seed Pigment
Source of Mutant
D. DellaPenna
Mutant Line Number
Ecotype
Wassilewskija
Genetic Background
ABRC Stock
Mutagen Treatment
T-DNA
Insertion Mutant
No
Flanking Sequence
Location of Mutation
Exon 2
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
White
Embryo Color
White
Percent Mutant Seeds
28.5 %
Chi - Square
6.6
Seeds Counted
992
Percent Top Half
50.9 %
Chi - Square
0.1
Average Seed Length
Average Embryo Length