Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: VCL 1
Gene Information
Gene Symbol
VCL 1
Chromosome Locus
At2g38020
Alleles in Database
1
Identity Confidence
Confirmed
Alias Symbol
MAN
(S. Gillmor) Alternate Name
Gene Class
Embryo Defective
Predicted Function
Vacuolar Protein Sorting (Vps16)
Function Details
Required for vacuole biogenesis and protein trafficking to the vacuole
Gene Evidence
Molecular Complementation
C. Somerville (1 allele)
Border Recovery
C. Somerville (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
4803 nucleotides
mRNA:
2875 nucleotides
Protein:
858 amino acids
cDNA Status
FLcDNA Available:
AY048248
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Rice (Oryza sativa) (55%)
Model Genomes:
Danio rerio (35%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
266096_at
Mutant Information
Allele Symbol
vcl 1
Mutant Class
Embryo Defective
Source of Mutant
Somerville / Feldmann
Mutant Line Number
Ecotype
WS/COL
Genetic Background
ABRC Stock
CS3941
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 4
Terminal Phenotype
Preglobular
Details
Nomarski Phenotype
Preglobular
Images
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
White
Embryo Color
White
Percent Mutant Seeds
20.1 %
Chi - Square
13.6
Seeds Counted
1082
Percent Top Half
49.5 %
Chi - Square
<0.1
Average Seed Length
390 ± 50 µm
Average Embryo Length
15 ± 0 µm