At4g10180 SYNGENTA 100654
Genomic Sequence (from TAIR)
aaaaccgatccgaatccgacactatccgaaccgaaaccaaaccgaatagtcataaaacccgaccggataataaactttcccatctgaatccgaaaatccg aaccgaatccgatccaaaatccgatccaaaatgtgaatgtccatacttaagctccgactaagcaaagcaatacaacaagagaaattgtacaaagaggaag tagtaccgataagtgccaatgacccaattttgcaactattgggccattttcaaacaccaatatcaggcccattaacagattgagagaaaccaacctccca aaagagaaaaatcaacagaaccaaaacaaagccacagtatctctctctctctctctctcactcacatcgtctcctccattttcaccactaaaaccagacc aaaaaccttcctttattcgtgcccttctgggccaacaaATGTTCACAAGCGGTAACGTCACCGCTCGGGTCTTCGAACGTCAGATTCGAACTCCTCCTCC CGGCGCTTCCgtcagtccccaaatctctctctctgtctcaatctctcaatctcaatctctcttttgcttatctctttaccttcaatgatagGTAAATCGT GCAAGACACTTCTACGAAAACCTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTCACAGAAGACGGACTCTTCC TCATTAGTTTCAGCCGTAACCATCAAGAACTCATAGTCTATCGTCCTTCTTGGCTCACTTACTCCACAACCGATGATTCCACAACCACCCTACCTCCTCT ACCTCGCCGTGCTTCGAAATTCGACAGCTTTTTCACTCAACTCTACTCAGTCAATCTCGCTTCTTCTAACGAACTCATCTGCAAAGACTTCTTCCTCTAT CACCAAACTCGTCGTTTCGGTCTTTTCGCTACTTCAACAGCTCAGATCCATGATTCATCATCTCCTTCTAATGACGCTGTTCCTGGTGTTCCTTCCATTG ATAAGATTACTTTCGTACTTCTTCGATTAGATGATGGTGTTGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTTAATCTGGCTCATAATATGGGTGT GTTTCTTTATGATGATCTTTTAGCGATTTTGTCGTTGCGTTATCAGAGGATTCATCTTCTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCT ATTGGTTACTTTTGTCGTGAAGATGATGAGCTTTTCCTCAATTCTAGCTCTCAGgtaagcaaagtttttacagtatctttctctggagtagataaagttt tgagctttgtgaggtttttgattgttagGCAATGATGAGTCAAGATAAGAGTAAACAGCAGAGTTTATCTGGGAGTAAGGAAGATGATACTGGAGAGAAT GGGTTGCGTCATAGTCTAAGTCAGCCAAGTGGTTCGAATTCGTTTCTTAGTGGTGTTAAGCAACGGTTACTTTCTTTTATCTTCAGGGAGATTTGGAATG AAGAATCAGATAACGTAATGgttcgttgttcttcaacttctcttatcactttatgaaattgctctgagtttcacaatcttgtacattaaatgggttatgt ttgtgtactgcttggcttcctctgttagatgttgagtaggataacagaagtttaaggtttaggattgatgcagttgacagtgacttcttagttgatgcag cttatcatatacatgctctttgcattttcgacctttcgttgtagtttgcaatgtgtgtcgtattgaaacactacatcttggatacgaactaatcgaaagg cactatttgatttgacagAGAGTTCAAAGTCTTAAGAAGAAGTTTTATTTCCATTTCCAGGATTATGTCGACTTGATTATATGGAAGgtaatcaattatg tgtttctgcttttggaatctgtgtcaagtgtttggatttgatggtgaaaaaaactaatcttttgtgtattcttgatgtccagGTTCAGTTTTTGGATCGA CAACACCTGCTAATCAAATTTGGAAGTGTAGACGGTGGGgtaagctctctataatacaaattcatggttacattgaactgatactgtcattttcagaaat tacaatttgattgattagacttatgattgttgatgggttactcagGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGA CTACTGACATTGTAGCATTCTATCAGgtaaaatggatgtcattttggccagttattttgtggaatttgcatctacttataacttgacttagtacattact atatgcagAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGAACTTTGTAACATC GCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGAACAAATCAAACAGTTTTTCTCAGgtaagtacatctctgtatttcgatatgttg gtttttatgagagagttgaatctaatcaatttttctatacagTTTGTGAAGAAGATGTTACTCTCTTTGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCC CATATTTCGACCAGTCTCTCTTCCGGTTCGATGAAAAGgtaaccattctataaacccttattctcttcaacttcaggattgagttaagttaatttcggat atggttaca◄gTTAATATCCGCAGCAGATAGGCATAGGCAATCCTCAGACAACCCAATCAAGTTCATATCTCGAAGGCA►ACCGCAAACCCTGAAATTCA AGATAAAACCAGgttggttgttttagttgtttagatattaagatg◄acgaaaacccaaaccgcacggaacatgatttaacgttaggattgtctaatggtg aacagGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACA CTTTTCATGCCACCTTCTGTCGTCAATATCCATTTTAGGCGATGActctttttggtttctatcagtctagtagtcttcctacatgttgtaatctattgtt tgtaacaaaagttcagtaaaacctctataaattccgagttgggccgatgtaaaaattaacaaacttcgataaaataataatataataatcttttggaaag ctttatataaaaatatggttttaatgtcttttaagtattgaatcttgttagagtttgtctctaacttttattctatcaaacaattgttttgtctctaagt ctgattgaattatgttggggttttcaattgtcaaattatagaatcgtttataactttgtaaaaaaattagccataatgttttgtaagtttctaatttctt agtatgcatcattttcaattatagtttttgtgatttattgtcaaatgagctttttaaatattaaattttcaattatattactataaaatttataacatct catagtttctaaaatttgaaaaattaaaacaaatatctctataaattaataatttaaatttaaattaatatattaattatagataaattattaatcacta taa
Border_1 (100654_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
TGTAACCATATCCGAAATTAACTTAACTCAATCCTGAAGTTGAAGAGAATAAGGGTTTATAGAATGGTTACCTTTTCATCGAACCGGAAGAGAGACTGGT
CGAAATATGGGGAGGGACTTTGTGACTGACAACTGAAAGGCAAAGAGAGTAACATCTTCTTCACAAACTGTATAGAAAAATTGATTAGATTCAACTCTCT
CATAAAAACCAACATATCGAAATACAGAGATGTACTTACCTGAGAAAAACTGTTTGATTTGTTCTTCGTGTATTTTAGTTGTTCAAGGGCATAGACGTTG
TTAGAATGCGATGTTACAAAGTTCATGAACGGTGTACTACTTGATACTGTAAAGTGATCACTGAACTGCTCAAATAATTGGTAAAGATCTTCTGCTGAGT
TCTGCATATAGTAATGTACTAAGTCAAGTTATAAGTAGATGCAAATTCCACAAAATAACTGGCCAAAATGACATCCATTTTACCTGATAGAATGCTACAA
TGTCAGTAGTCTCCATATTATACACCGCGAAGAAAGCTGGATGATGATCAGCACTTCTTGTTACCTGAGTAACCCATCAACAATCATAAGTCTAATCAAT
CAAATTGTAATTTCTGAAATGACAGTATCAGTTCAATGTACCATGAATTTGTATTATAGAGAGCTTACCCCACCGTCTAC
| Start of BLAST Alignment: | NT 2405 / Intron 9 of 9 |
| First 15 bp Perfect Match: | NT 2271 / Intron 8 of 9 |
BLAST Details: Query Sequence: 100654_LB2U Length: (880 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g10180 68417.t01586 light-mediated development protein... 3392 6.0e-149 1 At3g50780 68416.t05173 expressed protein 225 0.11 1 At3g15080 68416.t01689 exonuclease family protein contain... 204 0.67 1 At2g06095 68415.t00607 expressed protein 193 0.91 1 >At4g10180 68417.t01586 light-mediated development protein 1 / deetiolated1 (DET1) identical to Light-mediated development protein DET1 (Deetiolated1) (Swiss-Prot:P48732) [Arabidopsis thaliana] Length = 2814 Minus Strand HSPs: Score = 3392 (515.0 bits), Expect = 6.0e-149, P = 6.0e-149 Identities = 762/826 (92%), Positives = 762/826 (92%), Strand = Minus / Plus Query: 880 GTAGACGGTGGGGTAAGCTCTCTATAATACAAATTCATGGT-ACATTGAACTGATACTGT 822 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1670 GTAGACGGTGGGGTAAGCTCTCTATAATACAAATTCATGGTTACATTGAACTGATACTGT 1729 Query: 821 CATTT-CAGAAATTACAATTTGATTGATTAGACTTATGATTGTTGATGGGTTACTCAGGT 763 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1730 CATTTTCAGAAATTACAATTTGATTGATTAGACTTATGATTGTTGATGGGTTACTCAGGT 1789 Query: 762 AACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTACTGA 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1790 AACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTACTGA 1849 Query: 702 CATTGTAGCATTCTATCAGGTAAAATGGATGTCATTTTGGCCAGTTATTTTGTGGAATTT 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 CATTGTAGCATTCTATCAGGTAAAATGGATGTCATTTTGGCCAGTTATTTTGTGGAATTT 1909 Query: 642 GCATCTACTTATAACTTGACTTAGTACATTACTATATGCAGAACTCAGCAGAAGATCTTT 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 GCATCTACTTATAACTTGACTTAGTACATTACTATATGCAGAACTCAGCAGAAGATCTTT 1969 Query: 582 ACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGA 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 ACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGA 2029 Query: 522 ACTTTGTAACATCGCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGA 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 ACTTTGTAACATCGCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGA 2089 Query: 462 ACAAATCAAACAGTTTTTCTCAGGTAAGTACATCTCTGTATTTCGATATGTTGGTTTTTA 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 ACAAATCAAACAGTTTTTCTCAGGTAAGTACATCTCTGTATTTCGATATGTTGGTTTTTA 2149 Query: 402 TGAGAGAGTTGAATCTAATCAATTTTTCTATACAGTTTGTGAAGAAGATGTTACTCTCTT 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 TGAGAGAGTTGAATCTAATCAATTTTTCTATACAGTTTGTGAAGAAGATGTTACTCTCTT 2209 Query: 342 TGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCCCATATTTCGACCAGTCTCTCTTCCGGT 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2210 TGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCCCATATTTCGACCAGTCTCTCTTCCGGT 2269 Query: 282 TCGATGAAAAGGTAACCATTCTATAAACCCTTATTCTCTTCAACTTCAGGATTGAGTTAA 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2270 TCGATGAAAAGGTAACCATTCTATAAACCCTTATTCTCTTCAACTTCAGGATTGAGTTAA 2329 Query: 222 GTTAATTTCGGATATGGTTACAATATATTGTGGTGTAAACAAATTGACGCTTAGACAA-C 164 |||||||||||||||||||||| | || | | | | || || | || ||| ||| | Sbjct: 2330 GTTAATTTCGGATATGGTTACAGT-TAATATCC-GCAG-CAGATAG--GCATAGGCAATC 2384 Query: 163 TT-A-ATAACACATTGCGGA-CGTTTTT--AATGTA-CTGAATTAACGCCGAA-TTGAAT 111 | | | ||| || | | | | | | || | | | | | ||| | ||| || || Sbjct: 2385 CTCAGACAACCCAATCAAGTTCATATCTCGAAGGCAACCGCA--AACCCTGAAATTCAAG 2442 Query: 110 -T----CGAT-TTGGT-GTATCGAGATTGGTTATGAAATTCAGATG 72 | | | ||||| || | || ||| ||| || ||| ||||| Sbjct: 2443 ATAAAACCAGGTTGGTTGTTTT-AG-TTGTTTA-GATATTAAGATG 2485 >At3g50780 68416.t05173 expressed protein Length = 2126 Plus Strand HSPs: Score = 225 (39.8 bits), Expect = 0.11, P = 0.11 Identities = 139/228 (60%), Positives = 139/228 (60%), Strand = Plus / Plus
Border_2 (100654_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGACCGCAAACCCTGAAATTCAAGATAAAACCAGGTTGGTTGTTTTAGTTGTTTAGATATTAAGATGACGAAAACCCAAACCGCACGGAACATGATTT
AACGTTAGGATTGTCTAATGGTGAACAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTCCATCCTCATTTACCAC
TTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTCGTCAATAT
| Start of BLAST Alignment: | NT 2340 / Exon 9 of 10 |
| First 15 bp Perfect Match: | NT 2340 / Exon 9 of 10 |
BLAST Details: Query Sequence: 100654_LB1D Length: (452 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g10180 68417.t01586 light-mediated development protein... 1240 9.5e-51 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 182 0.93 1 >At4g10180 68417.t01586 light-mediated development protein 1 / deetiolated1 (DET1) identical to Light-mediated development protein DET1 (Deetiolated1) (Swiss-Prot:P48732) [Arabidopsis thaliana] Length = 2814 Plus Strand HSPs: Score = 1240 (192.1 bits), Expect = 9.5e-51, P = 9.5e-51 Identities = 248/248 (100%), Positives = 248/248 (100%), Strand = Plus / Plus Query: 205 ACCGCAAACCCTGAAATTCAAGATAAAACCAGGTTGGTTGTTTTAGTTGTTTAGATATTA 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2421 ACCGCAAACCCTGAAATTCAAGATAAAACCAGGTTGGTTGTTTTAGTTGTTTAGATATTA 2480 Query: 265 AGATGACGAAAACCCAAACCGCACGGAACATGATTTAACGTTAGGATTGTCTAATGGTGA 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2481 AGATGACGAAAACCCAAACCGCACGGAACATGATTTAACGTTAGGATTGTCTAATGGTGA 2540 Query: 325 ACAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTC 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2541 ACAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTC 2600 Query: 385 CATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTC 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2601 CATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTC 2660 Query: 445 GTCAATAT 452 |||||||| Sbjct: 2661 GTCAATAT 2668 >At3g61260 68416.t06335 DNA-binding family protein / remorin family protein similar to DNA-binding protein gi|601843 [Arabidopsis thaliana], remorin [Solanum tuberosum] GI:1881585; contains Pfam profiles PF03763: Remorin C-terminal region, PF03766: Remorin N-terminal region Length = 1538 Minus Strand HSPs: Score = 182 (33.4 bits), Expect = 2.7, P = 0.93 Identities = 168/304 (55%), Positives = 168/304 (55%), Strand = Minus / Plus