OSU  Syngenta  VBI
PDF  Help   

At4g10180 SYNGENTA 100654

Genomic Sequence (from TAIR)
aaaaccgatccgaatccgacactatccgaaccgaaaccaaaccgaatagtcataaaacccgaccggataataaactttcccatctgaatccgaaaatccg
aaccgaatccgatccaaaatccgatccaaaatgtgaatgtccatacttaagctccgactaagcaaagcaatacaacaagagaaattgtacaaagaggaag
tagtaccgataagtgccaatgacccaattttgcaactattgggccattttcaaacaccaatatcaggcccattaacagattgagagaaaccaacctccca
aaagagaaaaatcaacagaaccaaaacaaagccacagtatctctctctctctctctctcactcacatcgtctcctccattttcaccactaaaaccagacc
aaaaaccttcctttattcgtgcccttctgggccaacaaATGTTCACAAGCGGTAACGTCACCGCTCGGGTCTTCGAACGTCAGATTCGAACTCCTCCTCC
CGGCGCTTCCgtcagtccccaaatctctctctctgtctcaatctctcaatctcaatctctcttttgcttatctctttaccttcaatgatagGTAAATCGT
GCAAGACACTTCTACGAAAACCTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTCACAGAAGACGGACTCTTCC
TCATTAGTTTCAGCCGTAACCATCAAGAACTCATAGTCTATCGTCCTTCTTGGCTCACTTACTCCACAACCGATGATTCCACAACCACCCTACCTCCTCT
ACCTCGCCGTGCTTCGAAATTCGACAGCTTTTTCACTCAACTCTACTCAGTCAATCTCGCTTCTTCTAACGAACTCATCTGCAAAGACTTCTTCCTCTAT
CACCAAACTCGTCGTTTCGGTCTTTTCGCTACTTCAACAGCTCAGATCCATGATTCATCATCTCCTTCTAATGACGCTGTTCCTGGTGTTCCTTCCATTG
ATAAGATTACTTTCGTACTTCTTCGATTAGATGATGGTGTTGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTTAATCTGGCTCATAATATGGGTGT
GTTTCTTTATGATGATCTTTTAGCGATTTTGTCGTTGCGTTATCAGAGGATTCATCTTCTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCT
ATTGGTTACTTTTGTCGTGAAGATGATGAGCTTTTCCTCAATTCTAGCTCTCAGgtaagcaaagtttttacagtatctttctctggagtagataaagttt
tgagctttgtgaggtttttgattgttagGCAATGATGAGTCAAGATAAGAGTAAACAGCAGAGTTTATCTGGGAGTAAGGAAGATGATACTGGAGAGAAT
GGGTTGCGTCATAGTCTAAGTCAGCCAAGTGGTTCGAATTCGTTTCTTAGTGGTGTTAAGCAACGGTTACTTTCTTTTATCTTCAGGGAGATTTGGAATG
AAGAATCAGATAACGTAATGgttcgttgttcttcaacttctcttatcactttatgaaattgctctgagtttcacaatcttgtacattaaatgggttatgt
ttgtgtactgcttggcttcctctgttagatgttgagtaggataacagaagtttaaggtttaggattgatgcagttgacagtgacttcttagttgatgcag
cttatcatatacatgctctttgcattttcgacctttcgttgtagtttgcaatgtgtgtcgtattgaaacactacatcttggatacgaactaatcgaaagg
cactatttgatttgacagAGAGTTCAAAGTCTTAAGAAGAAGTTTTATTTCCATTTCCAGGATTATGTCGACTTGATTATATGGAAGgtaatcaattatg
tgtttctgcttttggaatctgtgtcaagtgtttggatttgatggtgaaaaaaactaatcttttgtgtattcttgatgtccagGTTCAGTTTTTGGATCGA
CAACACCTGCTAATCAAATTTGGAAGTGTAGACGGTGGGgtaagctctctataatacaaattcatggttacattgaactgatactgtcattttcagaaat
tacaatttgattgattagacttatgattgttgatgggttactcagGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGA
CTACTGACATTGTAGCATTCTATCAGgtaaaatggatgtcattttggccagttattttgtggaatttgcatctacttataacttgacttagtacattact
atatgcagAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGAACTTTGTAACATC
GCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGAACAAATCAAACAGTTTTTCTCAGgtaagtacatctctgtatttcgatatgttg
gtttttatgagagagttgaatctaatcaatttttctatacagTTTGTGAAGAAGATGTTACTCTCTTTGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCC
CATATTTCGACCAGTCTCTCTTCCGGTTCGATGAAAAGgtaaccattctataaacccttattctcttcaacttcaggattgagttaagttaatttcggat
atggttacagTTAATATCCGCAGCAGATAGGCATAGGCAATCCTCAGACAACCCAATCAAGTTCATATCTCGAAGGCAACCGCAAACCCTGAAATTCA
AGATAAAACCAGgttggttgttttagttgtttagatattaagatgacgaaaacccaaaccgcacggaacatgatttaacgttaggattgtctaatggtg
aacagGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACA
CTTTTCATGCCACCTTCTGTCGTCAATATCCATTTTAGGCGATGActctttttggtttctatcagtctagtagtcttcctacatgttgtaatctattgtt
tgtaacaaaagttcagtaaaacctctataaattccgagttgggccgatgtaaaaattaacaaacttcgataaaataataatataataatcttttggaaag
ctttatataaaaatatggttttaatgtcttttaagtattgaatcttgttagagtttgtctctaacttttattctatcaaacaattgttttgtctctaagt
ctgattgaattatgttggggttttcaattgtcaaattatagaatcgtttataactttgtaaaaaaattagccataatgttttgtaagtttctaatttctt
agtatgcatcattttcaattatagtttttgtgatttattgtcaaatgagctttttaaatattaaattttcaattatattactataaaatttataacatct
catagtttctaaaatttgaaaaattaaaacaaatatctctataaattaataatttaaatttaaattaatatattaattatagataaattattaatcacta
taa

Border_1 (100654_LB2U)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
TGTAACCATATCCGAAATTAACTTAACTCAATCCTGAAGTTGAAGAGAATAAGGGTTTATAGAATGGTTACCTTTTCATCGAACCGGAAGAGAGACTGGT
CGAAATATGGGGAGGGACTTTGTGACTGACAACTGAAAGGCAAAGAGAGTAACATCTTCTTCACAAACTGTATAGAAAAATTGATTAGATTCAACTCTCT
CATAAAAACCAACATATCGAAATACAGAGATGTACTTACCTGAGAAAAACTGTTTGATTTGTTCTTCGTGTATTTTAGTTGTTCAAGGGCATAGACGTTG
TTAGAATGCGATGTTACAAAGTTCATGAACGGTGTACTACTTGATACTGTAAAGTGATCACTGAACTGCTCAAATAATTGGTAAAGATCTTCTGCTGAGT
TCTGCATATAGTAATGTACTAAGTCAAGTTATAAGTAGATGCAAATTCCACAAAATAACTGGCCAAAATGACATCCATTTTACCTGATAGAATGCTACAA
TGTCAGTAGTCTCCATATTATACACCGCGAAGAAAGCTGGATGATGATCAGCACTTCTTGTTACCTGAGTAACCCATCAACAATCATAAGTCTAATCAAT
CAAATTGTAATTTCTGAAATGACAGTATCAGTTCAATGTACCATGAATTTGTATTATAGAGAGCTTACCCCACCGTCTAC

Start of BLAST Alignment:NT 2405 / Intron 9 of 9
First 15 bp Perfect Match:NT 2271 / Intron 8 of 9
BLAST Details:
Query Sequence: 100654_LB2U 
Length: (880 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g10180 68417.t01586 light-mediated development protein...  3392  6.0e-149  1
At3g50780 68416.t05173 expressed protein                       225  0.11      1
At3g15080 68416.t01689 exonuclease family protein contain...   204  0.67      1
At2g06095 68415.t00607 expressed protein                       193  0.91      1


>At4g10180 68417.t01586 light-mediated development protein 1 / deetiolated1
           (DET1) identical to Light-mediated development protein DET1
           (Deetiolated1) (Swiss-Prot:P48732) [Arabidopsis thaliana]
        Length = 2814

  Minus Strand HSPs:

 Score = 3392 (515.0 bits), Expect = 6.0e-149, P = 6.0e-149
 Identities = 762/826 (92%), Positives = 762/826 (92%), Strand = Minus / Plus

Query:   880 GTAGACGGTGGGGTAAGCTCTCTATAATACAAATTCATGGT-ACATTGAACTGATACTGT 822
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct:  1670 GTAGACGGTGGGGTAAGCTCTCTATAATACAAATTCATGGTTACATTGAACTGATACTGT 1729

Query:   821 CATTT-CAGAAATTACAATTTGATTGATTAGACTTATGATTGTTGATGGGTTACTCAGGT 763
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1730 CATTTTCAGAAATTACAATTTGATTGATTAGACTTATGATTGTTGATGGGTTACTCAGGT 1789

Query:   762 AACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTACTGA 703
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1790 AACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTACTGA 1849

Query:   702 CATTGTAGCATTCTATCAGGTAAAATGGATGTCATTTTGGCCAGTTATTTTGTGGAATTT 643
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1850 CATTGTAGCATTCTATCAGGTAAAATGGATGTCATTTTGGCCAGTTATTTTGTGGAATTT 1909

Query:   642 GCATCTACTTATAACTTGACTTAGTACATTACTATATGCAGAACTCAGCAGAAGATCTTT 583
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1910 GCATCTACTTATAACTTGACTTAGTACATTACTATATGCAGAACTCAGCAGAAGATCTTT 1969

Query:   582 ACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGA 523
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1970 ACCAATTATTTGAGCAGTTCAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGA 2029

Query:   522 ACTTTGTAACATCGCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGA 463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2030 ACTTTGTAACATCGCATTCTAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGA 2089

Query:   462 ACAAATCAAACAGTTTTTCTCAGGTAAGTACATCTCTGTATTTCGATATGTTGGTTTTTA 403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2090 ACAAATCAAACAGTTTTTCTCAGGTAAGTACATCTCTGTATTTCGATATGTTGGTTTTTA 2149

Query:   402 TGAGAGAGTTGAATCTAATCAATTTTTCTATACAGTTTGTGAAGAAGATGTTACTCTCTT 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2150 TGAGAGAGTTGAATCTAATCAATTTTTCTATACAGTTTGTGAAGAAGATGTTACTCTCTT 2209

Query:   342 TGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCCCATATTTCGACCAGTCTCTCTTCCGGT 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2210 TGCCTTTCAGTTGTCAGTCACAAAGTCCCTCCCCATATTTCGACCAGTCTCTCTTCCGGT 2269

Query:   282 TCGATGAAAAGGTAACCATTCTATAAACCCTTATTCTCTTCAACTTCAGGATTGAGTTAA 223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2270 TCGATGAAAAGGTAACCATTCTATAAACCCTTATTCTCTTCAACTTCAGGATTGAGTTAA 2329

Query:   222 GTTAATTTCGGATATGGTTACAATATATTGTGGTGTAAACAAATTGACGCTTAGACAA-C 164
             |||||||||||||||||||||| | || | |   | |  || || |  || ||| ||| |
Sbjct:  2330 GTTAATTTCGGATATGGTTACAGT-TAATATCC-GCAG-CAGATAG--GCATAGGCAATC 2384

Query:   163 TT-A-ATAACACATTGCGGA-CGTTTTT--AATGTA-CTGAATTAACGCCGAA-TTGAAT 111
              | | | ||| || |   |  | | | |  || | | | | |  ||| | ||| || || 
Sbjct:  2385 CTCAGACAACCCAATCAAGTTCATATCTCGAAGGCAACCGCA--AACCCTGAAATTCAAG 2442

Query:   110 -T----CGAT-TTGGT-GTATCGAGATTGGTTATGAAATTCAGATG 72
              |    | |  ||||| || |  || ||| ||| || ||| |||||
Sbjct:  2443 ATAAAACCAGGTTGGTTGTTTT-AG-TTGTTTA-GATATTAAGATG 2485


>At3g50780 68416.t05173 expressed protein
        Length = 2126

  Plus Strand HSPs:

 Score = 225 (39.8 bits), Expect = 0.11, P = 0.11
 Identities = 139/228 (60%), Positives = 139/228 (60%), Strand = Plus / Plus


Border_2 (100654_LB1D)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGACCGCAAACCCTGAAATTCAAGATAAAACCAGGTTGGTTGTTTTAGTTGTTTAGATATTAAGATGACGAAAACCCAAACCGCACGGAACATGATTT
AACGTTAGGATTGTCTAATGGTGAACAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTCCATCCTCATTTACCAC
TTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTCGTCAATAT

Start of BLAST Alignment:NT 2340 / Exon 9 of 10
First 15 bp Perfect Match:NT 2340 / Exon 9 of 10
BLAST Details:
Query Sequence: 100654_LB1D 
Length: (452 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g10180 68417.t01586 light-mediated development protein...  1240  9.5e-51   1
At3g61260 68416.t06335 DNA-binding family protein / remor...   182  0.93      1


>At4g10180 68417.t01586 light-mediated development protein 1 / deetiolated1
           (DET1) identical to Light-mediated development protein DET1
           (Deetiolated1) (Swiss-Prot:P48732) [Arabidopsis thaliana]
        Length = 2814

  Plus Strand HSPs:

 Score = 1240 (192.1 bits), Expect = 9.5e-51, P = 9.5e-51
 Identities = 248/248 (100%), Positives = 248/248 (100%), Strand = Plus / Plus

Query:   205 ACCGCAAACCCTGAAATTCAAGATAAAACCAGGTTGGTTGTTTTAGTTGTTTAGATATTA 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2421 ACCGCAAACCCTGAAATTCAAGATAAAACCAGGTTGGTTGTTTTAGTTGTTTAGATATTA 2480

Query:   265 AGATGACGAAAACCCAAACCGCACGGAACATGATTTAACGTTAGGATTGTCTAATGGTGA 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2481 AGATGACGAAAACCCAAACCGCACGGAACATGATTTAACGTTAGGATTGTCTAATGGTGA 2540

Query:   325 ACAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTC 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2541 ACAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGATATGTTCATTCTTGTTC 2600

Query:   385 CATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTC 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2601 CATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTTCATGCCACCTTCTGTC 2660

Query:   445 GTCAATAT 452
             ||||||||
Sbjct:  2661 GTCAATAT 2668


>At3g61260 68416.t06335 DNA-binding family protein / remorin family protein
           similar to DNA-binding protein gi|601843 [Arabidopsis thaliana],
           remorin [Solanum tuberosum] GI:1881585; contains Pfam profiles
           PF03763: Remorin C-terminal region, PF03766: Remorin N-terminal
           region
        Length = 1538

  Minus Strand HSPs:

 Score = 182 (33.4 bits), Expect = 2.7, P = 0.93
 Identities = 168/304 (55%), Positives = 168/304 (55%), Strand = Minus / Plus