At3g54170 SYNGENTA 104176
Genomic Sequence (from TAIR)
aattataaattataaaatataaatatttcaaaaaataatataatttgtaaacttttatccataataaatagccattaaaatttaaaaattactattttta gaaaacaaattacgaattagaataagaaattacagaacatgatatattttggaacagaataatatggcgaacgattttgaataaatatttttaaaatttt aaataatattaatatgccattttaatactagttaaatcttcaatttactatttacgattgtctcctgaacacctgttataccattagtaaaaaaacggat ccatgaccgattgaccacgttctcgtcttcccccaaatctaaaaccctaaattctcaattgctcgtcacacttcgtcactccaccagcgacaatcgccgc agaaacctctacgaaacttgctacaATGGAGTTTTCATCACAAGACGACGATTTTGGAGGAGACGATTCCGCTGCTAATGCCACCAGGGCTTCAGgtccc gacattaatggatttctcttaattcatggtttttgtttaaggttggattggacattaatttctcatctgtatcattcagGTAATAGAAGAAGCTTCGGTG ATCTTGAAGACGATGAAGATGATATTTTCGGATCAACAACGGTAGCGCCTGGTGTTAGAACTGGGATGATTTTGTCTCTCCGAGGAAGgttattatccaa tcctttcttcatgtatgagaaaaatctttgatgtataattctaactttcttttgctttttctctttggcagTCTTAAGAATTGTAAAGATGATCTTGCTT CATGTCAAgtaagcattgttactgttcatccctaatctgtttgaattctataccattgctgtttatggttgcttcgcttttgcatctaactatatcgttt tggttagAATGAGCTCGAGTCAGCAAAAACAGAGATTCAGAAGTGGAAGTCAGCGTTTCAGAATGAGTCCTTTGTTCCCGCTGGAAAATCTCCTGgttaa cctctctttctcaattttgttttgtacatttgtatatgcgatgttaattcttgagcattcaatatgattctgtttggtacttttttttttccagAACCAA GATTTTTGATTGATTATATTCAAAACCTAAAATCTTCTGAGAAATCTTTGAAAGAACAGgtttgtacttgagtaataacttgtgtgtatatatcaatatg aaggtcttgattttcaaataaggtttggttgttgtttctctcttttcagTTAGAAATCGCAAAGAGAAAAGAAGCGTCATGCATTGTACAATATGCGAAA CGGGAACAAGAAATGGCAGAATTGAAGgtaattctcgagaaactcattgcctaccactttgattcctgactgatgctatcacatgttttcttgaccatta catagaatagatgtcgctaaacacagtcttgtattttgtatttctagTCAGCTGTTCGCGATTTGAAATCTCAACTCAAGCCAGCGTCAATGCAGgtata tagttctcccaatgttttgattctggaataatttatacaattgtgccaacaatacaaatcgtgaaaaaagttagctgttgaagtaacttggacttttcta ggcatagtccgctttttatgccgtagtgtaccttttatgacggtcatcctcgaccttgatgcatgtagagggaaaccttttccttgccttttagatttca gtctgaatacgatgataagcgcatgtttcttgtaaacctttacctggcatctgaattattaacaagtctgaatagaagaaatggctataaattttgaatt gcaatggtcatttagcagcttgtcatgatcagatagcagtgtagattatttattctttgtttacctttgtagGCGAGGAGGTTGTTACTGGATCCAGCAA TTCATGAAGAATTTTCACGTCTGAAGgtctgcacctactcgtttctatttacccttagactactttttcataaggatgtatttgtcgtaatatatcctta gataatccaaactgtatctacggaacaaaattccgctttcgttatgaatggcctgaaagaataattccttaataactgatagctgacactgt◄cgtagta gatacagttgaggacgaacattcccaac►tttttgttaatgtacatttgttgcagttaagtaaagagtagatgaagtttgattccatgtttctattatgc agAATCTAGTAGAGGAAAAAGACAAGAAGATCAAGGAACTCCAGGACAACATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGAAAGATGCTTAT GGCAAAGTGCAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAGCTGCCGAAGGAAAGgtatagtttgttctactctcagtcttcaatctggaa ttatatgaattatatagtaaagcagtagtcttcttcaacctttgtaaaacatgattccctgaaaagggtaaagaaattgatgcttgcctatgttcatgtg gaatggcagATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTCAAAACGCGGAACTTAGAAGTCAATTTGAAGgtaagtcatatgttgatatta agttatagcaaagatttttgtagagtttgcaatttggatttgaggatttttgtggaatgcagGACTGTACAAACACATGGAGGAATTAACTAATGATGTT GAGAGATCAAATGAAACGgtgttgatccttttctcttatctcttaattcctcaagatttttcttaaaacggaagaatgattatggttttgttggaaatat gtgactttgataaatctcagGTGATAATATTGCAAGAGAAACTGGAAGAGAAAGAGAAGGAGATAGAGAGAGTAAAGAAAGGACTGGAAATTGTGTCTGA GCTAGTAGGTGACAAGAAAGATGAAGTTGATGAAATTGATGAAGATGCAAAAGAAGAAATTGCTGGTGGAGAATAGgaatttgtagctttcaaaaaatgt tttgtacattttgaagttcaaaatcacatttcttcattcgttatctgtttcatgaaacagaaagttctaatcttcatcttctattaatatgttttaattc gcaccattggtgtttcgatatcgatatgtggcttcccgatataactcgtgaagaatttgaactcgtcaactcacgcaaatcatctgagtagatatcagat tagaccaaaataagtgagtccaattagttttccccaaaaacattcacagaggtcacgactttaggttaatctgttgcagttgtcacgaacgaattcaaaa tccaaaggagcgggaaaaacgaagtgacgtggaagtatcttagcgaaagcatctctctctctctctctcacaatccatcatcttcattaatctgatcaaa taatagggttaatcaaaagtccagaaaccaacacagttcaattttacgaaacctctcagaaATGGAGAAGTACGAGAAGCTAGAGAAGGTCGGAGAAGGA AC
Border_1 (104176_LBD)
CAGTGTAGATTATCNATTCNTTGTTGACCTTTGTAGGCGAGGAGGTTGTTACTGGATCCAGCNATTCATGAAGAATTTTCACGTCTGAAGGTCTGCACCT
ACTCGTTTCTATTTACCCTTAGACTTCTTTTTCATAAGGATGTATTTGTCGTAATATATCCTTAGATAATCCAAACTGTATCTACGGANCAAAATTCCGC
TTTCGTTATGAATGGCCNGAAAGAATAATTCCTTAATAACTGATAGCTGACACTGT
| Start of BLAST Alignment: | NT 1667 / Intron 8 of 11 |
| First 15 bp Perfect Match: | NT 1667 / Intron 8 of 11 |
| Reverse Complement |
BLAST Details: Query Sequence: 104176_LBD Length: (256 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54170 68416.t05553 FKBP12 interacting protein (FIP37)... 1218 9.4e-50 1 >At3g54170 68416.t05553 FKBP12 interacting protein (FIP37) identical to FKBP12 interacting protein (FIP37) GI:3859944 from [Arabidopsis thaliana] Length = 2769 Plus Strand HSPs: Score = 1218 (188.8 bits), Expect = 9.4e-50, P = 9.4e-50 Identities = 248/256 (96%), Positives = 248/256 (96%), Strand = Plus / Plus Query: 1 CAGTGTAGATTATCNATTCNTTGTTGACCTTTGTAGGCGAGGAGGTTGTTACTGGATCCA 60 ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| Sbjct: 1509 CAGTGTAGATTATTTATTCTTTGTTTACCTTTGTAGGCGAGGAGGTTGTTACTGGATCCA 1568 Query: 61 GCNATTCATGAAGAATTTTCACGTCTGAAGGTCTGCACCTACTCGTTTCTATTTACCCTT 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1569 GCAATTCATGAAGAATTTTCACGTCTGAAGGTCTGCACCTACTCGTTTCTATTTACCCTT 1628 Query: 121 AGACTTCTTTTTCATAAGGATGTATTTGTCGTAATATATCCTTAGATAATCCAAACTGTA 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1629 AGACTACTTTTTCATAAGGATGTATTTGTCGTAATATATCCTTAGATAATCCAAACTGTA 1688 Query: 181 TCTACGGANCAAAATTCCGCTTTCGTTATGAATGGCCNGAAAGAATAATTCCTTAATAAC 240 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1689 TCTACGGAACAAAATTCCGCTTTCGTTATGAATGGCCTGAAAGAATAATTCCTTAATAAC 1748 Query: 241 TGATAGCTGACACTGT 256 |||||||||||||||| Sbjct: 1749 TGATAGCTGACACTGT 1764
Border_2 (104176_RBU)
TTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATGCTAGCATATGCCATGGA
AACTATCACTGAGCTGGCACGCCGCGCCGCAGGCAAGGCAGAAGCCAGATGGTTGTTCAAGACGATCTACGAACGCAGTGGCAGCGCCGGAGAGTTCAAA
CAAGAATATACAAGACTATCAGTGTCTAAGTGTAGATATATTTTTGTTAATGTACATTTGTTGCAGTTAAGTAAAGAGTAGATGAAGTTTGATTCCATGT
TTCTATTATGCAGAATCTAGTAGAGGAAAAAGACAAGAAGATCAAGGAACTCCAGGACAACATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGA
AAGATGCTTATGGCAAAGTGCAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAGCTGCCGAAGGAAAGGTATAGTTTGTTCTACTCTCAGTCT
TCAATCTGGAATTATATGAATTATATAGTAAAGCAGTAGTCTTCTTCAACCTTTGTAAAACATGATTCCCTGAAAAGGGTAAAGAAATTGATGCTTGCCT
ATGTTCATGTGGAATGGCAGATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTCAAAACGCGGAACTTAG
| Start of BLAST Alignment: | NT 1702 / Intron 8 of 11 |
| First 15 bp Perfect Match: | NT 1702 / Intron 8 of 11 |
BLAST Details: Query Sequence: 104176_RBU Length: (676 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54170 68416.t05553 FKBP12 interacting protein (FIP37)... 2180 3.4e-94 1 At1g51690 68414.t05339 serine/threonine protein phosphata... 211 0.29 1 At5g07790 68418.t00813 expressed protein 193 0.91 1 At5g24870 68418.t02668 zinc finger (C3HC4-type RING finge... 191 0.95 1 >At3g54170 68416.t05553 FKBP12 interacting protein (FIP37) identical to FKBP12 interacting protein (FIP37) GI:3859944 from [Arabidopsis thaliana] Length = 2769 Plus Strand HSPs: Score = 2180 (333.1 bits), Expect = 3.4e-94, P = 3.4e-94 Identities = 436/436 (100%), Positives = 436/436 (100%), Strand = Plus / Plus Query: 241 TTTTTGTTAATGTACATTTGTTGCAGTTAAGTAAAGAGTAGATGAAGTTTGATTCCATGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 TTTTTGTTAATGTACATTTGTTGCAGTTAAGTAAAGAGTAGATGAAGTTTGATTCCATGT 1859 Query: 301 TTCTATTATGCAGAATCTAGTAGAGGAAAAAGACAAGAAGATCAAGGAACTCCAGGACAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1860 TTCTATTATGCAGAATCTAGTAGAGGAAAAAGACAAGAAGATCAAGGAACTCCAGGACAA 1919 Query: 361 CATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGAAAGATGCTTATGGCAAAGTG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1920 CATTGCAGCAGTTACTTTTACTCCTCAAAGCAAGAATGGAAAGATGCTTATGGCAAAGTG 1979 Query: 421 CAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAGCTGCCGAAGGAAAGGTATA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1980 CAGAACCCTGCAAGAGGAAAATGAGGAGATTGGGCACCAAGCTGCCGAAGGAAAGGTATA 2039 Query: 481 GTTTGTTCTACTCTCAGTCTTCAATCTGGAATTATATGAATTATATAGTAAAGCAGTAGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2040 GTTTGTTCTACTCTCAGTCTTCAATCTGGAATTATATGAATTATATAGTAAAGCAGTAGT 2099 Query: 541 CTTCTTCAACCTTTGTAAAACATGATTCCCTGAAAAGGGTAAAGAAATTGATGCTTGCCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2100 CTTCTTCAACCTTTGTAAAACATGATTCCCTGAAAAGGGTAAAGAAATTGATGCTTGCCT 2159 Query: 601 ATGTTCATGTGGAATGGCAGATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2160 ATGTTCATGTGGAATGGCAGATTCATGAACTAGCAATAAAGCTTGCAATGCAGAAGTCTC 2219 Query: 661 AAAACGCGGAACTTAG 676 |||||||||||||||| Sbjct: 2220 AAAACGCGGAACTTAG 2235 >At1g51690 68414.t05339 serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to 55 kDa B regulatory subunit of phosphatase 2A (GI:710330) [Arabidopsis thaliana]; similar to type 2A protein serine/threonine phosphatase 55 kDa B regulatory GI:1408460 [Arabidopsis thaliana]; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak) Length = 4472 Plus Strand HSPs: Score = 211 (37.7 bits), Expect = 0.34, P = 0.29 Identities = 111/179 (62%), Positives = 111/179 (62%), Strand = Plus / Plus