At5g06240 SYNGENTA 105153
Genomic Sequence (from TAIR)
atcatgttctaaagaatttgaatctgatcatataagtagagaataatttttaacaaaatttccattttgatcgattggaactttttgggttacttatttc gatgttacgatctctagtgttccaaacttctgtggtttgtaaaagaatttgaaccggccaatctgttggtttactttgtaattaatttgctggctgatgt ttcctaaaaaagattgtttgacgtaaatttggtaaattgtcggttttgtggagaaaaatataaggtttgctcaagtacacatcgactaaaccggagaaca agagcttttttagttacaatcggataaaccgagcaattaaataattatcactgtgaaccaaatcctaaaccgaaccttataagacgtctcgaatagatta aacctgcgacggtaagctcaagagaggctgagtacactgagctgcgatcggcgactgtctcttgtccgggatagtgaaagATGAAGCTGAAGGTTGTGTA TCGTAAGGTCTCCGATTACATCTGTTACGATCTGAAAGAAATCGTCTTACCTTCATCACTTCCCGATCCTCCTCACGTCGTTAAACGCCGCAAATTGACT TGGCACGAGCGATTCCTCgtgagctttccttcactctctcttcctcttttttatttgaattttccggtagttttctattgagaggatctggggaatcaaa attttctttcaaggacaaacaaagttcgcattttttcgtgctctgattttcttgtgctctatt►tagtttttttgtccaatttagagtgaatgtgttctc gattaggtctttaatcagcagatgtttgagatgatacagaatctggaagtgtgtgattt◄catttatgtata◄ttgtggaatatctgaaacacaaatgtg acaattctctagtttgagcaaaaaggttcgtcctttc►tagaagaagtctgtaattccacgtctcactattttcagagtaattggtgttttcttctctac ttgatagtaaatttagtgctaatcactgggtgaaatattcatggttgtgattagGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAG ATATAGGTCCTGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAGGCAGAGAACGAGCCCTCTGTTTTGGA AGATCTTGgtaagaagctattgcctactttatatgtatctgacttatattctcctttggtgtcaccaaacgtttgctattgatattgacaagtgcttttc ccagctaatattcactgcagcatgcattagtttattgacttcatcatgtatgatctatgtctatccttttattcataatcgcttgtttttcattctttgt tctgttactcttctatacagCGGTAGCTGCAAGAGGTGGCATGGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACACGAGCTTCTAATTATAAA GATGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCTGCAGCAAGTTATGCAGAATAAAGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGT CCAAAAAGACTACCTGAccttttagttagctccaaaagcaggatttattttgtgaatgcgagtatgtacgtagctagatcttgggttctttgatggtgta ccacaacaatctaaagatttctatcaactacgtagtctttcatgctcaatgtaccctatttgtgaagtaacttctagtaaacaaaaaaatttagcttgac acttgtgcttcatagatttcagttccaattttcgcagcttcttccctgtgaaactgctgcagggaggacttgttacaaaaactgatgtgataaacttaat gatatattgtgatgggtttgattccctttacagcttattcagatttcattctccaggaattttctgagcacaagctggcacattgcacggataccttgta ttggtgaaggactcaggtgaatgtttggacatgctgaaacaatagtgtaagcaactgtttgaaatagatgtttagttttttcagaggaaagactttcagt tttcttcccatgttaaaagcattgttagtggaattttaatccatgctatctgtaacagtcttccataatgctgttgcagaaaaagttggccggcccctag aagt
Border_1 (105153_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATAAAT
CACACACTTCCAGATTCTGTATCATCTCAAACATCTGCTGATTAAAGACCTAATCGAGAACACATTCACTCTAAATTGGACAAAAAAACTAAATAGAGCA
CAAGAAAATCAGAGCACGAAAAAATGCGAACTTTGTTTGTCCTTGAAAGAAAATTTTGATTCCCCAGATCCTCTCAATAGAAAACTACCGGAAAATTCAA
ATAAAAAAGAGGAAGAGAGAGTGAAGGAAAGCTCACGAGGAATCGCTCGTGCCAAGTCAATTTGCGGCGTTTAACGACGTGAGGAGGATCGGGAAGTGAT
GAAGGTAAGACGATTTCTTTCAGATCGTAACAGATGTAATCGGAGACCTTACGATACACAACCTTCAGCTTCATCTTTCACTATCCCGGACAAGAGACAG
TCGCGT
| Start of BLAST Alignment: | NT 390 / Intron 1 of 2 |
| First 15 bp Perfect Match: | NT 378 / Intron 1 of 2 |
BLAST Details: Query Sequence: 105153_LB2D Length: (606 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g06240 68418.t00637 expressed protein 2049 5.6e-88 1 At5g52450 68418.t06043 MATE efflux protein-related strong... 228 0.037 1 At1g32200 68414.t03558 glycerol-3-phosphate acyltransfera... 211 0.23 1 At2g20580 68415.t02281 26S proteasome regulatory subunit ... 204 0.45 1 >At5g06240 68418.t00637 expressed protein Length = 1384 Minus Strand HSPs: Score = 2049 (313.5 bits), Expect = 5.6e-88, P = 5.6e-88 Identities = 415/420 (98%), Positives = 415/420 (98%), Strand = Minus / Plus Query: 604 GCGACTGTCTCTTGTCCGGGATAGTGAAAGATGAAGCTGAAGGTTGTGTATCGTAAGGTC 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38 GCGACTGTCTCTTGTCCGGGATAGTGAAAGATGAAGCTGAAGGTTGTGTATCGTAAGGTC 97 Query: 544 TCCGATTACATCTGTTACGATCTGAAAGAAATCGTCTTACCTTCATCACTTCCCGATCCT 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98 TCCGATTACATCTGTTACGATCTGAAAGAAATCGTCTTACCTTCATCACTTCCCGATCCT 157 Query: 484 CCTCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATTCCTCGTGAGCTTTCCT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 CCTCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATTCCTCGTGAGCTTTCCT 217 Query: 424 TCACTCTCTCTTCCTCTTTTTTATTTGAATTTTCCGGTAGTTTTCTATTGAGAGGATCTG 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 TCACTCTCTCTTCCTCTTTTTTATTTGAATTTTCCGGTAGTTTTCTATTGAGAGGATCTG 277 Query: 364 GGGAATCAAAATTTTCTTTCAAGGACAAACAAAGTTCGCATTTTTTCGTGCTCTGATTTT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 GGGAATCAAAATTTTCTTTCAAGGACAAACAAAGTTCGCATTTTTTCGTGCTCTGATTTT 337 Query: 304 CTTGTGCTCTATTTAGTTTTTTTGTCCAATTTAGAGTGAATGTGTTCTCGATTAGGTCTT 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 CTTGTGCTCTATTTAGTTTTTTTGTCCAATTTAGAGTGAATGTGTTCTCGATTAGGTCTT 397 Query: 244 TAATCAGCAGATGTTTGAGATGATACAGAATCTGGAAGTGTGTGATTT-ATTGTGGTGTA 186 |||||||||||||||||||||||||||||||||||||||||||||||| ||| || || Sbjct: 398 TAATCAGCAGATGTTTGAGATGATACAGAATCTGGAAGTGTGTGATTTCATTTATGTATA 457 >At5g52450 68418.t06043 MATE efflux protein-related strong similarity to unknown protein (pir||T02324); contains Pfam profile PF01554 Uncharacterized membrane protein family Length = 2964 Minus Strand HSPs: Score = 228 (40.3 bits), Expect = 0.038, P = 0.037 Identities = 236/411 (57%), Positives = 236/411 (57%), Strand = Minus / Plus
Border_2 (105153_LB1U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTAAACGAATTCAATG
TGTTAGAAGAAGTCTGTAATTCCACGTCTCACTATTTTCAGAGTAATTGGTGTTTTCTTCTCTACTTGATAGTAAATTTAGTGCTAATCACTGGGTGAAA
TATTCATGGTTGTGATTAGGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCCTGAACTTCGTCCAAATGATTACAAG
AAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAGGCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGGTAAGAAGCTATTGCCTACTTTATATG
TATCTGACTTATATTCTCCTTTGGTGTCACCAAACGTTTGCTATTGATATTGACAAGTGCTTTTCCCAGCTAATATTCACTGCAGCATGCATTAGTTTAT
TGACTTCATCATGTATGATCTATGTCTATCCTTTTATTCATAATCGCTTGTTTTTCATTCTTTGTTCTGTTACTCTTCTATACAGCGGTAGCTGCAAGAG
GTGGCATGGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACACGAGCCTTCTAATTATAAAGATGCTCTTACAAGCTTTATTAAAGGTTACCATG
AGGGTCTGCAGCAAGTTATGCAGAATAAAGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTCCAAAAAGACTACCTG
| Start of BLAST Alignment: | NT 283 / Intron 1 of 2 |
| First 15 bp Perfect Match: | NT 454 / Intron 1 of 2 |
BLAST Details: Query Sequence: 105153_LB1U Length: (881 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g06240 68418.t00637 expressed protein 3390 1.5e-148 1 At5g42220 68418.t04783 ubiquitin family protein contains ... 218 0.24 1 At4g07650 68417.t01138 pseudogene, hypothetical protein 208 0.48 1 At3g27770 68416.t03142 expressed protein 196 0.94 1 >At5g06240 68418.t00637 expressed protein Length = 1384 Plus Strand HSPs: Score = 3390 (514.7 bits), Expect = 1.5e-148, P = 1.5e-148 Identities = 766/855 (89%), Positives = 766/855 (89%), Strand = Plus / Plus Query: 35 TATTATATCTTCCCAAATTACCAATACAT-TACACTAGCATCTGAATTTCATAACCA-AT 92 || | | | | |||| ||| | | || | || | | | ||| || | || || Sbjct: 351 TAGTTTTTTTGTCCAATTTAG-AGTGAATGTGTTCTCGATTAGGTCTTTAATCAGCAGAT 409 Query: 93 CTCGATACACCAAATCGAATTCATTCG-GCGTTAATTCAGTACATTAAAAACGTCCGCA- 150 | | | | | |||| | | || | |||| | || | | || | | Sbjct: 410 GTTTG-AGATGATACAGAATCTGGAAGTGTGTGATTTCATTT-ATGTATATTGTG-GAAT 466 Query: 151 ATGTGTTATT-AAGT-TGTCTAAGCGTCAA-TTTGTTTAAACGAATTCAATGTGT-TAGA 206 || || | || | || | | | || | |||| ||| ||| | | |||| Sbjct: 467 ATCTGAAACACAAATGTGACAATTC-TCTAGTTTGAGCAAAAAGGTTCGTCCTTTCTAGA 525 Query: 207 AGAAGTCTGTAATTCCACGTCTCACTATTTTCAGAGTAATTGGTGTTTTCTTCTCTACTT 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 AGAAGTCTGTAATTCCACGTCTCACTATTTTCAGAGTAATTGGTGTTTTCTTCTCTACTT 585 Query: 267 GATAGTAAATTTAGTGCTAATCACTGGGTGAAATATTCATGGTTGTGATTAGGTGTTGAA 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 GATAGTAAATTTAGTGCTAATCACTGGGTGAAATATTCATGGTTGTGATTAGGTGTTGAA 645 Query: 327 GGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCCTGAACTTCGTCC 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 GGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCCTGAACTTCGTCC 705 Query: 387 AAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAGGCAGAGAA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 AAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAAAGAGGCAGAGAA 765 Query: 447 CGAGCCCTCTGTTTTGGAAGATCTTGGTAAGAAGCTATTGCCTACTTTATATGTATCTGA 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 766 CGAGCCCTCTGTTTTGGAAGATCTTGGTAAGAAGCTATTGCCTACTTTATATGTATCTGA 825 Query: 507 CTTATATTCTCCTTTGGTGTCACCAAACGTTTGCTATTGATATTGACAAGTGCTTTTCCC 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 CTTATATTCTCCTTTGGTGTCACCAAACGTTTGCTATTGATATTGACAAGTGCTTTTCCC 885 Query: 567 AGCTAATATTCACTGCAGCATGCATTAGTTTATTGACTTCATCATGTATGATCTATGTCT 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 AGCTAATATTCACTGCAGCATGCATTAGTTTATTGACTTCATCATGTATGATCTATGTCT 945 Query: 627 ATCCTTTTATTCATAATCGCTTGTTTTTCATTCTTTGTTCTGTTACTCTTCTATACAGCG 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 ATCCTTTTATTCATAATCGCTTGTTTTTCATTCTTTGTTCTGTTACTCTTCTATACAGCG 1005 Query: 687 GTAGCTGCAAGAGGTGGCATGGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACA 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 GTAGCTGCAAGAGGTGGCATGGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACA 1065 Query: 747 CGAGCCTTCTAATTATAAAGATGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCT 806 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 CGAGC-TTCTAATTATAAAGATGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCT 1124 Query: 807 GCAGCAAGTTATGCAGAATAAAGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTC 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 GCAGCAAGTTATGCAGAATAAAGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTC 1184 Query: 867 CAAAAAGACTACCTG 881 ||||||||||||||| Sbjct: 1185 CAAAAAGACTACCTG 1199 >At5g42220 68418.t04783 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain Length = 5313 Plus Strand HSPs: Score = 218 (38.8 bits), Expect = 0.27, P = 0.24 Identities = 234/406 (57%), Positives = 234/406 (57%), Strand = Plus / Plus