PDF Help

At1g12260 SYNGENTA 105605

Genomic Sequence (from TAIR)

acggtatataattgggtttcactgattttactttcttgaaaattcagttatttaccatgagtccatgactttaaactagtgagtttaattaattatctcg
aacctacataactaaccatgtgaatagtcttcacatatttctttagatgtaagcatgtaacacaactaattcttgtaattaataaatgtctgacgataat
tcctttcgattttgaattcaacctcttatatattcagcatagtacgtctaatcatatgtctgtcgaaataatcaactaattcacaatcacactatgtaag
atatgtaactacctagctatatataaccttcttatgttcataatttcatgactttgttttcgatttgtttggtgattttcttataggcagattattaacc
gatcaagaagacaaacATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTTGTAGACTACTACCTGAGGAAAAAA
GTCGCATCGAAGAGAATAGAAATTGATTTCATAAAGGACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGgtttgcccaatcccaccatctcta
tccttcattactttgtctctatttcctaaggaaagattttaaaagtctttttttattcgtttgtggaaatagAGTTGTGCAAAATTGGGCATGAAGAGCA
GAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACTCGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGA
GATAAGGCTATCTATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCCCCAAATGGACAAAAGTCTGATTGGATCA
TGCACGAATACCGCTTAGAAACCGATGAAAACGGAACTCCTCAGgtattaatataacaaccctaaaacattacttctctataaaagttagttgcatgttt
atactaaacaatctcattatatgatagttgcatatatgatctcctaaaatcatttgaggtaatctcattaaatgatatttgggttgtagGAAGAAGGATG
GGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGCAGTTAGACGAATGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAACTTTCTTTT
ATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATCATCAGCAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTCA
ATGCATCTGCTTACGCTCTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTACACTACAACCACCTG◄G►TACAACGAAATCATCTTCTTGAT
GAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAGAAAGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAACA
TCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATATCGCGCATGAGGAACAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACAT
GAACAGCGGCAACGAGCAAGTGATGGACCAAGTCACAGACTGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAAGCAACGAGGAGGCTGCCACAGCT
TCTGCATCTATACAGAATAATGCCAAGGACACAAGCAATGCTGAGTACCAAGTTGATGAAGAAAAAGATCCGAAAAGGGCTTCAGACATGGGAGAAGAAT
ATACTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAAGTGAgctgaaagagaagacatataaatgcatatatacatatatatatatacgtacac
acgaacactaatcaagtgtagatgatgatgatggtacagatttatatttgctttgattgattcttactacattattgaacttatgtcatatgcatatata
cattgcgtatctatgcatatttatacttgtactcaatatgattaaccatatataaactctaatctaaatgtaactccaatattttttaaatagacaattg
tctcttcttattttattttattttctaaataatcttctagtataaacaatttcacatacactaaaaaggaagctttttacttcaaatttatacgtctgat
cagattctcacttgctgtactatatccacacaagtcataggtatatagtatatatagagaaaattcagaaaatttttactaattaaaatgtggactggcg
ac

Border_1 (105605_LB1)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCCGCAATGTGTTATTAAGATGATT
CTTCAGGTGGTTGTAGTGTAGTTCTAGCTCTTGCTTGCATTGCAAGTTAGGGTTGTTGAGAGCGTAAGCAGATGCATTGAGGCCATATGGCATATGTTGT
TGGTGCTCGTGCTGCTGCTGCTGATGATGATTGGGGAGAATCCGTCGTTGACCGTTTGTCTCGAGCTCGGAGGCCATAAAAGAAAGTTGATCATCGTACC
AATGTGAAGGGGATGAGTCGTAATCTCCCATTCGTCTAACTGCAGCCAATCTCTTCTTGAAAACCCTACACACAACCCATCCTTCTTCCTACAACCCAAA
TATCATTTAATGAGATTACCTCAAATGATTTTAGGAGATCATATATGCAACTATCATATAATGAGATTGTTTAGTATAAACATGCAACTAACTTTTATAG
AGAAGTAATGTTTTAGGGTTGTTATATTAATACCTGAGGAGTTCCGTTTTCATCGGTTTCTAAGCGGTATTCGTGCATGATCCAATCAGACTTTTGTCCA
TTTGGGGCTCTTCCCTTGTAAAACACAAGTGTTTTCCTCATGCCAATTAGACTATGCCTCAAATAGATAGCCTTATCTCTTCCGGTGGCTTTCCAAAACC
CTGCTTTTGTTGCTCTATGT

Start of BLAST Alignment:	NT 958 / Exon 3 of 3
First 15 bp Perfect Match:	NT 958 / Exon 3 of 3

BLAST Details:
Query Sequence: 105605_LB1 
Length: (820 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g12260 68414.t01261 no apical meristem (NAM) family pr...  3075  2.1e-134  1
At1g62700 68414.t06486 no apical meristem (NAM) family pr...   788  3.0e-57   2
At2g18060 68415.t01990 no apical meristem (NAM) family pr...   514  3.0e-23   2
At4g36160 68417.t04730 no apical meristem (NAM) family pr...   588  7.9e-21   1


>At1g12260 68414.t01261 no apical meristem (NAM) family protein similar to NAC2
           (GI:6456751)  [Arabidopsis thaliana]; contains Pfam PF02365 : No
           apical meristem (NAM) protein
        Length = 1655

  Minus Strand HSPs:

 Score = 3075 (467.4 bits), Expect = 2.1e-134, P = 2.1e-134
 Identities = 615/615 (100%), Positives = 615/615 (100%), Strand = Minus / Plus

Query:   818 ATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATCTATTTGA 759
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   344 ATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATCTATTTGA 403

Query:   758 GGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCCCCAAATG 699
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   404 GGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCCCCAAATG 463

Query:   698 GACAAAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAACGGAACTC 639
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   464 GACAAAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAACGGAACTC 523

Query:   638 CTCAGGTATTAATATAACAACCCTAAAACATTACTTCTCTATAAAAGTTAGTTGCATGTT 579
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   524 CTCAGGTATTAATATAACAACCCTAAAACATTACTTCTCTATAAAAGTTAGTTGCATGTT 583

Query:   578 TATACTAAACAATCTCATTATATGATAGTTGCATATATGATCTCCTAAAATCATTTGAGG 519
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   584 TATACTAAACAATCTCATTATATGATAGTTGCATATATGATCTCCTAAAATCATTTGAGG 643

Query:   518 TAATCTCATTAAATGATATTTGGGTTGTAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTC 459
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   644 TAATCTCATTAAATGATATTTGGGTTGTAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTC 703

Query:   458 AAGAAGAGATTGGCTGCAGTTAGACGAATGGGAGATTACGACTCATCCCCTTCACATTGG 399
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   704 AAGAAGAGATTGGCTGCAGTTAGACGAATGGGAGATTACGACTCATCCCCTTCACATTGG 763

Query:   398 TACGATGATCAACTTTCTTTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATT 339
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   764 TACGATGATCAACTTTCTTTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATT 823

Query:   338 CTCCCCAATCATCATCAGCAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTC 279
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   824 CTCCCCAATCATCATCAGCAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTC 883

Query:   278 AATGCATCTGCTTACGCTCTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTA 219
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   884 AATGCATCTGCTTACGCTCTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTA 943

Query:   218 CACTACAACCACCTG 204
             |||||||||||||||
Sbjct:   944 CACTACAACCACCTG 958


>At1g62700 68414.t06486 no apical meristem (NAM) family protein similar to NAC2
           (GI:6456751)  [Arabidopsis thaliana]; contains Pfam PF02365 : No
           apical meristem (NAM) protein
        Length = 1699

  Minus Strand HSPs:

 Score = 788 (124.3 bits), Expect = 3.0e-57, Sum P(2) = 3.0e-57
 Identities = 252/343 (73%), Positives = 252/343 (73%), Strand = Minus / Plus

Border_2 (105605_LB2)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTAGTTATCATCTTAAGTTG
TCTAACGGCAGTTAATTTGTTATTAATTTGTCTACACTACAACGAAATCATCTTCTTGATGAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAGAAA
GCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAACATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATC
AAATATCGCGCATGAGGAACAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAACGAGCAAGTGATGGACCAAGTCACAGAC
TGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAAGCAACGAGGAGGCTGCCACAGCTTCTGCATCTATACAGAATAATGCCAAGGACACA

Start of BLAST Alignment:	NT 959 / Exon 3 of 3
First 15 bp Perfect Match:	NT 959 / Exon 3 of 3

BLAST Details:
Query Sequence: 105605_LB2 
Length: (593 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g12260 68414.t01261 no apical meristem (NAM) family pr...  1780  6.6e-76   1
At1g62700 68414.t06486 no apical meristem (NAM) family pr...   284  4.3e-05   1
At2g23470 68415.t02620 expressed protein contains Pfam do...   201  0.52      1
At4g13960 68417.t02046 F-box family protein contains F-bo...   199  0.56      1


>At1g12260 68414.t01261 no apical meristem (NAM) family protein similar to NAC2
           (GI:6456751)  [Arabidopsis thaliana]; contains Pfam PF02365 : No
           apical meristem (NAM) protein
        Length = 1655

  Plus Strand HSPs:

 Score = 1780 (273.1 bits), Expect = 6.6e-76, P = 6.6e-76
 Identities = 356/356 (100%), Positives = 356/356 (100%), Strand = Plus / Plus

Query:   238 TACAACGAAATCATCTTCTTGATGAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAG 297
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   960 TACAACGAAATCATCTTCTTGATGAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAG 1019

Query:   298 AAAGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCA 357
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1020 AAAGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCA 1079

Query:   358 ACATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATATCGCGCATGAGG 417
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1080 ACATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATATCGCGCATGAGG 1139

Query:   418 AACAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAACGAGC 477
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1140 AACAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAACGAGC 1199

Query:   478 AAGTGATGGACCAAGTCACAGACTGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAA 537
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1200 AAGTGATGGACCAAGTCACAGACTGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAA 1259

Query:   538 GCAACGAGGAGGCTGCCACAGCTTCTGCATCTATACAGAATAATGCCAAGGACACA 593
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1260 GCAACGAGGAGGCTGCCACAGCTTCTGCATCTATACAGAATAATGCCAAGGACACA 1315


>At1g62700 68414.t06486 no apical meristem (NAM) family protein similar to NAC2
           (GI:6456751)  [Arabidopsis thaliana]; contains Pfam PF02365 : No
           apical meristem (NAM) protein
        Length = 1699

  Plus Strand HSPs:

 Score = 284 (48.7 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 136/208 (65%), Positives = 136/208 (65%), Strand = Plus / Plus