At3g19980 SYNGENTA 106495
Genomic Sequence (from TAIR)
AGAACTGTATACAGCTGAGCTCAACCATTTCATGAACAACTTTGTCCTTTCTTGCTGCCACCATTCTTCATAGcgacttccacaagtgttgttgttgcta accatttttggggtccttttaactcttatacaagaaagagaaaaatagttactgattgatgattctttttggtttggattggtttatagattcaaattca ttattcctttgtaaattgttggatattgtacatttaggagaatgaagattcaagaaagtgacgtccttgtcctttgtagtggagatttggatcttatggt tgtcttttgttatttgttcaaagagggttgttaagaacccaatcataaagtttttggcaattctcataatttttagaagtatgagggatcacaatcgtat ttcttatgagacgctggttcgtcaacgattgcgttttgacaaacgcaaaagtttgatttgcgttggaagcggcagagatcgatctgggatctttttttct ttttgccgtatgtgtcattttgtgaaa◄ctcgaacctctcattctctctttcatctcc►tc►ctcttacgtaaccctaacgaagtcgaagattctctggt agatctatctcgattcgattcgattcctcttttttcccagaaaagtcgctattgaaatcgaacgaaagtgttgaagattttaccagtcagaggtatatat atatagagagagagttATGGATTTGGATCAATGGATTTCCAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACgta cgccttcttcttcttcttcttcttacttgatttcttctcttggtcgattaagcttcttgtgctcttctctgcttggtttgatctgtatttatatacctta gtggaacgtgacttcgatctggtctgtagtgattttaggatttttctttcttttcaactatggaggcatcaattttgtagtttagataccattttatggt ctcctttctcagcgattgatttatagatttgcgaagatgaatcatggtgttaaccagaagatgtttatcataatgttatacagGTGAAAGAGATTCTGAT TGAGGAGTCAAACGTACAGCCTGTAAACAGTCCAGTCACCGTATGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACCGGAGGT CATGTTCCCGACACCAATTACATTTTTATGgtaccgagttttcttttgtggtgtcttgtatgacatattgatatgaaattatgaatacaatcataatctg gtgtgggaaattcgcagGGGGACTTCGTGGATAGAGGTTACAACAGCCTTGAAGTCTTCACTATTCTTTTACTTCTTAAAGCTAGgtaaggtgctcataa atgttctggagattcctgttatcattgaatctttgcctttaagtttttttttgttcgtgcttaatacgaacttattgtttattaagcaattaatcttgat aattatttatctttctttggaagaaatagtcccagtaacgtattgcattcaaaattagtccaaacgagaatgatattgtttctttagcatctcatgtttc tctgttctttgtattctaatatgtagATATCCAGCCAATATTACACTTTTGCGCGGAAATCATGAAAGTAGGCAGCTAACGCAGgtatgtgttattctgt tccacttatatctattattctgcttttcacgctgttcctaggaggtaagcaatgttgattatcttctcgttgttacagcagggttttgaaagttctgatt ttgtactacatgtggcaatgtcatgtcagatgtagacatcgatgttagctaagatgcattttatgtgaatcaagtattggaaagctaatttcagaaggtg cttcatatagtaccagtctcctttttagcatgtgtgtaatccttagtgttctagttgatacataggtttttaaggaagaaagtgtggtgataattttgta tttgaatgcattcctggcaaacctttactaagacttagtctgcaatcatacctcttaaagtgcaattcaaatatgcatttcgtgaatctgctgactagat gatcaaaattatacatggattctcgacattgaactcctttataacacagaaccatttgatttacttttttagGTGTATGGTTTCTATGACGAATGCCAGA GGAAGTATGGTAACGCTAATGCGTGGCGATATTGCACAGATGTTTTTGACTATCTTACCCTGTCAGCTATTATAGATGGCACAgtaagtgatttcttagc aacttggcattgttgatgagaacacatatagctgtatgttatactaaaatagtttgctttgtctagGTTCTATGTGTTCACGGTGGCCTTTCCCCGGATG TCCGGACAATTGATCAGgttaaactctgcttttattgcttgtggctttcacccgtcaattatgcttctagcttggcatgttattaaggtcctccactcac atagatttgctgtgggctctagATAAGACTGATCGAGCGAAATTGCGAAATTCCTCATGAAGGGCCCTTTTGCGATCTTATGTGGAGTGATCCTGAAGAT ATTGAAACATGGGCGGTTAGTCCACGTGGAGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGAGgtatgtttactttctcaaaagcttgaattgatac tgtaactaagaaattaatttcacatctctgatctttggttctggcttcttgtgcagTTTAACCATATCAACAAGCTGGATCTAGTATGCCGCGCGCACCA ACTTGTACAAGAAGGTCTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTgtgagtgtcctgcttctaatgaattgatattttttattagtgggcgtt ttgaaactctgcttagtgattgttaattttgttttgtttgtgaagGTATGGTCTGCACCTAATTACTGTTACCGCTGTGGGAATGTCGCTTCTATATTGA GTTTCAATGACAACATGgtgagcctctcttagtctttcctaaatgaatactctaatcttctctgtcagcaagaagggattctattacttcagtgatttta atcatttcttttaagattctactctatcaaaatatgtacactcttgttgatttgctatgtgcctctttgaattaatggatctaggaagattatagaaagt aatttagagaatttaaatcaagtaagccatgtgcaatgaggtttgaatatctgtgtgagccatagattctgtttctgcatttgtagtggattttcattga ccatagattcaagctgtctgtgctactaggatcctccttcctgcatgggttagtgatgaaatcgattgaaatgtttgtattaccagGAAAGGGAAGTGAA GTTCTTCACAGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCCGTATTTCCTATGAagaatcacacttattatatttgctgtgatg atgaagccattgctgccattggcaatatgttcagttcaatgtggaaaaggttaatatatgattatatatattatctactgatgggtttcgcttactatca ttatttttgtcctttaggttacatttcccttgtgaaagttacaagtcaaacactttggtaatagtcttagtcattttgattctctgctctcttttctttc ccccaatctttcttctgtaatgttatttttttcattgttcacttgtactgtttcctctgtttttgttgttgttgttgtgaagatgacattaattctaaaa taatcaaacatcgttacaaatgggacagtatcgcaacaataaatgaatacctgtcggtctcgagctattcaatcatttcattcggcttttggtgtgttgc ctttcagatctatgatacagattgttgtctcaagtaatggagagaggggtagtccttacaataaaaaaaaaaagttattatatgcagtcatgaatgtggt aaaaagaattgcaatttttagtttgtaattttcagttaattaatcttcactatataactacactcctatgagttgctcagtgagttgcatgcttgtatga tttaaaattaatagtaactctttttattacaaaacagtgaaacactatgagaagtgggggagttcagttcttgttctgtttgccgatgaacatcaatgtt gct
Border_1 (106495_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACSTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTTCACAAAATGACAC
ATACGGCAAAAAGAAAAAAAGATCCCAGATCGATCTCTGCCGCTTCCAACGCAAATCAAACTTTTGCGTTTGTCAAAACGCAATCGTTGACGAACCAGCG
TCTCATAAGAAATACNGATTGTGATCCCTCATACTTCTAAAAATTATGAGAATTGCCAAAAACTTTATGATTGGGTTCTTAACAACCCTCTTTGAACAAA
TAACAAAAGACAACCATAAGATCCAAATCTCCACTACAAAGGACAAGGACGTCACTTTCTTGAATCTTCATTCTCCTAAATGTACAATATCCAACAATTT
ACAAAGGAATAATGAATTTGAATCTATAAACCAATCCAAACCAAAAAGAATCATCAATCAGTAACTATTTTTCTCTTTCTTGTATAAGAGTTAAAAGGAC
CCCAAAANTGGTTAGCAACAACAACACTTGTGGAAGTCCGCTATGAAGGAATGGTGGCAGCAAGNAAGGACAAAGTTGTTCATGAAATGGTTGAGCTCAG
CTGTATACAGTTCTGGGTTACTCCGGAAATGGTCTACATGAGGGTGAAGATATGAAGTTTGNAAGCACGGGCCTCANNGTNCTGCTTTCCTCTGCTCTAC
AATGAATGATTCAACTTTGTTCCACCCGGTATAACTCTGTCTGCAGAGC
| Start of BLAST Alignment: | NT < 186 / Upstream |
| First 15 bp Perfect Match: | NT < 186 / Upstream |
BLAST Details: Query Sequence: 106495_LB2D Border #1 Length: (849 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MZE19 60702 3070 1.5e-132 1 FCAALL 68169 239 0.053 1 F17F8 50724 218 0.41 1 F8L21 67105 216 0.48 1 MZE19 60702 Length = 32,093 Minus Strand HSPs: Score = 3070 (466.7 bits), Expect = 1.5e-132, P = 1.5e-132 Identities = 638/665 (95%), Positives = 638/665 (95%), Strand = Minus / Plus Query: 849 GCTCTGCAGACAGAGTTATACCGGGTGGAACAAAGTTGAATCATTCATTGTAGAGCAGAG 790 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 13174 GCTCTGCAGACAGAGTTATACCGG-TGGAACAA-GTTGAATCATTCATTGTAGAGCAGAG 13231 Query: 789 GAAAGCAGNACNNTGAGGCCCGTGCTTNCAAACTTCATATCTTCACCCTCATGTAGACCA 730 |||||||| || ||||| |||||||| ||| ||||||||||||||| |||||||||||| Sbjct: 13232 GAAAGCAGGACA-TGAGGTCCGTGCTTGCAA-CTTCATATCTTCACC-TCATGTAGACCA 13288 Query: 729 TTTCCGGAGTAACCCAGAACTGTATACAGCTGAGCTCAACCATTTCATGAACAACTTTGT 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13289 TTTCCGGAGTAACCCAGAACTGTATACAGCTGAGCTCAACCATTTCATGAACAACTTTGT 13348 Query: 669 CCTTNCTTGCTGCCACCATTCCTTCATAGCGGACTTCCACAAGTGTTGTTGTTGCTAACC 610 |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 13349 CCTTTCTTGCTGCCACCATTC-TTCATAGCG-ACTTCCACAAGTGTTGTTGTTGCTAACC 13406 Query: 609 ANTTTTGGGGTCCTTTTAACTCTTATACAAGAAAGAGAAAAATAGTTACTGATTGATGAT 550 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13407 ATTTTTGGGGTCCTTTTAACTCTTATACAAGAAAGAGAAAAATAGTTACTGATTGATGAT 13466 Query: 549 TCTTTTTGGTTTGGATTGGTTTATAGATTCAAATTCATTATTCCTTTGTAAATTGTTGGA 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13467 TCTTTTTGGTTTGGATTGGTTTATAGATTCAAATTCATTATTCCTTTGTAAATTGTTGGA 13526 Query: 489 TATTGTACATTTAGGAGAATGAAGATTCAAGAAAGTGACGTCCTTGTCCTTTGTAGTGGA 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13527 TATTGTACATTTAGGAGAATGAAGATTCAAGAAAGTGACGTCCTTGTCCTTTGTAGTGGA 13586 Query: 429 GATTTGGATCTTATGGTTGTCTTTTGTTATTTGTTCAAAGAGGGTTGTTAAGAACCCAAT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13587 GATTTGGATCTTATGGTTGTCTTTTGTTATTTGTTCAAAGAGGGTTGTTAAGAACCCAAT 13646 Query: 369 CATAAAGTTTTTGGCAATTCTCATAATTTTTAGAAGTATGAGGGATCACAATCNGTATTT 310 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13647 CATAAAGTTTTTGGCAATTCTCATAATTTTTAGAAGTATGAGGGATCACAATC-GTATTT 13705 Query: 309 CTTATGAGACGCTGGTTCGTCAACGATTGCGTTTTGACAAACGCAAAAGTTTGATTTGCG 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13706 CTTATGAGACGCTGGTTCGTCAACGATTGCGTTTTGACAAACGCAAAAGTTTGATTTGCG 13765 Query: 249 TTGGAAGCGGCAGAGATCGATCTGGGATCNNNNNNNNNNNNNGCCGTATGTGTCATTTTG 190 ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 13766 TTGGAAGCGGCAGAGATCGATCTGGGATCTTTTTTTCTTTTTGCCGTATGTGTCATTTTG 13825 Query: 189 TGAAA 185 ||||| Sbjct: 13826 TGAAA 13830 FCAALL 68169 Length = 1,874,423 Minus Strand HSPs: Score = 239 (41.9 bits), Expect = 0.054, P = 0.053 Identities = 187/320 (58%), Positives = 187/320 (58%), Strand = Minus / Plus
Border_2 (106495_LB1U)
CCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATACA
TTGCGGATTGTCGTAGTTCTCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTCGATTCGATTCGATTCCTCTTTTTTCCCAGAAAA
GTCGCCTATTGAAATCGAACGAAAGTGTTGAAGATTTTACCAGTCAGAGGTATATATATATAGAGAGAGAGTTATGGATTTGGATCAATGGATTTCCAAG
GTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGTACGCCTTCTTCTTCTTCTTCTTCTTACTTGATTTCTTCTCTTGG
TCGATTAAGCTTCTTGTGCTCTTCTCTGTCCCCRYYTGATCTGTATTTATATACCTTAGNGGAACGTGACTTNGATCTGGTCTGTAGAGATTATAGGGAT
TTTTCTTTNTTNTTCAACTATGGAGGCNTCAATTTTGTGGNTNAGATACCATTNTATGGGACTCCTTTCTCAGNGANTGATTTATAGATCNGCGAAGACG
GAGTCATGGGGGCNAACCAGAAGATGGTCATCATAATGTTATACAGGGNGAGAAGAGATTNTGATTGAGGAAGNNAANCCGNCAGNCNGGAAACNAGT
| Start of BLAST Alignment: | NT < 156 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 154 / 5’ UTR |
BLAST Details: Query Sequence: 106495_LB1U Length: (698 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g19980 68416.t02257 serine/threonine protein phosphata... 2136 2.8e-92 1 At1g50370 68414.t05168 serine/threonine protein phosphata... 493 1.6e-16 1 At2g32235 68415.t03651 expressed protein 182 0.998 1 >At3g19980 68416.t02257 serine/threonine protein phosphatase (STPP) identical to serine/threonine protein phosphatase [Arabidopsis thaliana] GI:14582206; very similar to serine/threonine protein phosphatase GB:Z47076 GI:1143510 [Malus domestica]; contains Pfam profile PF00149: Ser/Thr protein phosphatase Length = 3284 Plus Strand HSPs: Score = 2136 (326.5 bits), Expect = 2.8e-92, P = 2.8e-92 Identities = 477/555 (85%), Positives = 480/555 (86%), Strand = Plus / Plus Query: 117 TTCTCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTCGATTCGATT 176 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28 TCCTCTTACGTAACCCTAACGAAGTCGAAGATTCTCTGGTAGATCTATCTCGATTCGATT 87 Query: 177 CGATTCCTCTTTTTTCCCAGAAAAGTCGCCTATTGAAATCGAACGAAAGTGTTGAAGATT 236 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 88 CGATTCCTCTTTTTTCCCAGAAAAGTCGC-TATTGAAATCGAACGAAAGTGTTGAAGATT 146 Query: 237 TTACCAGTCAGAGGTATATATATATAGAGAGAGAGTTATGGATTTGGATCAATGGATTTC 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 TTACCAGTCAGAGGTATATATATATAGAGAGAGAGTTATGGATTTGGATCAATGGATTTC 206 Query: 297 CAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGT 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 CAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAGCTTCAGCTTCTCTGCGAATACGT 266 Query: 357 ACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGATTAAGCTTCTTG 416 |||| |||||||||||||||||| Sbjct: 267 ACGCCTTCTTCTTCTTCTTCTTCTTACTTGATTTCTTCTCTTGGTCGATTAAGCTTCTTG 326 Query: 417 TGCTCTTCTCTGTCCCCRYYTGATCTGTATTTATATACCTTAGNGGAACGTGACTTNGAT 476 |||||||||||| | +++||||||||||||||||||||||| |||||||||||| ||| Sbjct: 327 TGCTCTTCTCTG-CTTGGTTTGATCTGTATTTATATACCTTAGTGGAACGTGACTTCGAT 385 Query: 477 CTGGTCTGTAGAGATTATAGGGATTTTTCTTTNTTNTTCAACTATGGAGGCNTCAATTTT 536 ||||||||||| |||| |||| |||||||||| || ||||||||||||||| |||||||| Sbjct: 386 CTGGTCTGTAGTGATTTTAGG-ATTTTTCTTTCTT-TTCAACTATGGAGGCATCAATTTT 443 Query: 537 GTGGNTNAGATACCATTNTATGGGACTCCTTTCTCAGNGANTGATTTATAGATCNGCGAA 596 || | | |||||||||| ||||| |||||||||||| || |||||||||||| ||||| Sbjct: 444 GTAGTTTAGATACCATTTTATGGT-CTCCTTTCTCAGCGATTGATTTATAGATTTGCGAA 502 Query: 597 GACGGAGTCATGGGGGCNAACCAGAAGATGGTCATCATAATGTTATACAGGGNGAGAAGA 656 || | | |||||| | |||||||||||| | |||||||||||||||||| || |||| Sbjct: 503 GATGAA-TCATGGTGT-TAACCAGAAGATGTTTATCATAATGTTATACAGG-TGA-AAGA 558 Query: 657 GATTNTGATTGAGGA 671 |||| |||||||||| Sbjct: 559 GATTCTGATTGAGGA 573 >At1g50370 68414.t05168 serine/threonine protein phosphatase, putative nearly identical to serine/threonine protein phosphatase [Arabidopsis thaliana] GI:14582206 Length = 3259 Plus Strand HSPs: Score = 493 (80.0 bits), Expect = 1.6e-16, P = 1.6e-16 Identities = 183/257 (71%), Positives = 183/257 (71%), Strand = Plus / Plus