At1g43170 SYNGENTA 10708
Genomic Sequence (from TAIR)
gtccaccagtttccaatctttgaaatacgaaacaaaaaataaataaaagtataaaacctttatctaatttgtaaaaacatttgttgggctttaggcccaa aacaaaagtcggcccatatttgagtgttcacaaaacctagatactcttactataaattcaaactagggttttaaagctcatttctctcttgcagtcctca tcgttggagcttagaagccgtcggcacaaggttcgtctttctctcatccctttcctcttcctttgcgtgaattcaccagaaaatgtatatctaccttagc gagtctgtctagtttagcgaatctaggataatctccggaagacacttttgaatcatcactgtttttgatctctgtttctttctctaattgtgttgttgta ttactgttgatgtagaagaagaagaagaagaATGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAAC CGTCACAGAGGAAAGGgtgagtctttttatcaaatgtagattccttgttagtgaaatgattactagggttttcataaagcttctctctttttgctcactc acaaatattgaattcttaagtagtgaatgaaatggttgatttgattcaaaaggttgttcttttattgtttgttttgcttatacgttgttgttggtttatc agTGAAGGCGTTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAG AAACCTGGATCCAgtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttg tgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGA GGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCA CTGGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGC TCACACTCAGgtaagtttgcttattgaatggaagtgtatatcataaactcttctgcactacgttcttactgacaattctatgtgacctctaattacagAT CAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTG►GTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTTT CTTTGAGAAGCAGATCCCAATTGAAGCTGTCTTCCAGAAG◄GATGAAATGATT◄GATATCATTGGTGTGACCAAGGGT►AAGGGTTATGAAGGTGTTGTT ACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTG TTGCTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGAC TGAATATGACAGgtcagtagaaatttctctgtttcgtttcttttctcctgtctggtcatgattacttctgtggtttatctgagtctgatgataatgtttt gtgtatgatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGCTG TGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACC GCCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAgagttgttttatcacaattcttctt agaaagtttcatgtttggttatctgttgctacttatctcagagatgttatcctttaaacaatgttatggagttttcttttgcttttagtttgttactttt ttggaagttaaaacgatttgcttctcaagttttgagactttgatgtgttctttatcatttatgaaaaaccaacctggagcataaaaaacaacaaagaatc tgtctttggtggtgatattgaaactgcctttaatgcatttcgaattatcatttgaaaattgatacaaaaccacaattgttacattggtgcttccaagctt atcaatcttccctatgatgaaacaagcatgcccacttccacaacttaaatcacatctgctgacaccaataggcagtatcatatcataaatctatatgtca ttca
Border_1 (10708_RBD)
CATGGTGGAGCACGACACTCTCGTCTACTCCAAGAATATCAAAGATACAGTCTCAGAAGACCAGAGGGCTATTGAGACTTTTCAACAAAGGGTAATATCG
GGAAACCTCCTCGGATTCCATTGCCCAGCTATCTGTCACTTCATCGAAAGGACAGTAGAAAAGGAAGATGGCTTCTACAAATGCCATCATTGCGATAAAG
GAAAGGCTATCGTTCAAGATGCCTCTACCGACAGTGGTSCCAAAGATGGACCCCCACCCACGAGGAACATCGTGGAAAAAGAAGACGTTCCAACCACGTC
TTCAAAGCAAGTGGATTGATGTGATATCTAGATCCGAAACAATTGATCTGCTTCCATATTGACCTTCATACTCATTGCTGATACTTCTGGAAGACAGCTT
CAATTGGGATCTGCTTCTCAAAGAAACTGTAGGCAAAGTCAACCTTCTGGGCAATGGTACCACCATTGATCTGGATCTCCATCATGTGAGCCTTCTTCTG
CTTCAATCCCTTCATCTTCCTGATCTGTAATTAGAGGTCACATAGAATTGTCAGTAAGAACGTAGTGCAGAAGAGTTTATGATATACACTTCCATTCAAT
AAGCAAACTTACCTGAGTGTGAGCCAAAACACGGATGACAGTAGCGTACTTCTTCATCTTCTCAAGCTGAGCCTGAATACCCTTCTTGCCATCCTCACTG
TCATACTGCTTAGCGTACCCAGTGAAAGCCTTCTTCTTAGACTTAGCCCAGTTCTTGTAGAACCTTCTCCTGACCTCCTCACTCAAATGCTGTGCCCAGA
CAGTGTTCAAAGACCTCAAACCTCTAGGAGTCTTCACATAGGCAACAACTCCAACAACCACCATAGCAGGTGTCTCAATGATGGTAACAGCCTCACATGT
CTCCTTCTTGTGAAGCTCTACACAACAATAAAAACACAAAGTTGACGACTTTAAATCGCAAAAACCTCCACAAAACAAATCAGAATGAAAAAAACACAAG
TTCACTTACTGGATCCAGGTTTCTCCACTTCTCTGACAATGTGAGTCATACCAGCTTTGTAACCCATGAAAGCTGTGAACTTGCAAGGCTTGGTTTGGTC
ATCCTTAGGGAACGCCTTCACTGATAAACCAACAACAACGTATAAGCAAAACAAACAATAAAAGAACAACCTTTTGAATCAAATCAACCATTTCATTCAC
TACTTAAGAATTCAATATTTGTGAGTGAGCAAAAAGAGAGAAGCTTTATGAAAACCCTAGTAATCATTTCACTAACAAGGAATCTACATTTGATAAAAAG
ACTCACCCTTTCCTCTGTGACGGTTAGCTCTCTTCCTTGGAAGGAAACCAAGAGAACCATGTCTTGGGTGCTCAAACTTCCTGTGAGACATTCTTCTTCT
TCTTCTTCTACATCAACAGTAATACAACAACACAATTAGAGAAAGAAACAGAGATCAAAAACAGTGATGATTCAAAAGTGTCTTCCGGAGATTATCCTAG
ATTCGCTAAACTAGACAGACTCGCTAAGGTAGATATACATTTTCTGGTGAATTCACGCAAAGGAAGAGGAAAGGGATGAGAGAAAGACGAACCTTGTGCC
GACGGCTTCTAAGCTCCAACGATGAGGACTGCAAGAGAGAAATGAGCTTTAAAACCCTAGTTTGAATTTATAGTAAGAGTATCTAGGTTTTGTGAACACT
CAAATATGGGCCGACTTTTGTTTTGGGCCTAAAGCCCAACAAATGTTTTTACAAATTAGATAAAGGTTTTATACTTTTATTTATTTTTTGTTTCGTATTT
CAAAGATTGGAAACTGGTGGACAGCTAAAAAAAGACATTTCAGATTGAGTATAAATAATATTAACACAGTAATTAATTGTATTAGATCAATGATGTTCCA
ATTTATAGTAAGAGTATCTAGGTTTTGTGAATTCTCAAATATGGGCCGAATTTTGTTATTGGGCCTAAATAAAGCCCAGAGGTTTGTACAAATTTGATAA
AGGTTTTATTTATTTTTTGTTTCGTATAAAAAGAAAAGACAACAGCTAAATCCGATAACACACTCACATGTTCACAGTTCACTTGAAGCAAAAATTTCAT
TATGTTTACTTATAATGATATGGTTACTCCGTGGGTGGTTTTGTCAAATGATCGATATGGTTATTGATAAAAATTTATCGATGTTTGTAGTATAATGGTG
TGTGTTACTGCTGCCACCGTATTGTATGTAAGCTTCAAAGTTGGAAGTGTGTGTGAATTGTAGACGGCAAAAGTTTTGTCGTGAAAGAAAGTTAAAATTT
GTTGGTTACTAAAGGGAATAAATATAACTTAAGGTAACACATGGATGTTTTTTTGTATCTTGTTACTATATGATTTTATAGTAGTTCCTATCATTTTGAA
ATTTAGATTTAAGCTAAATTTTATATATTTAAACTTAATCTAGATTTAATATTTCTCATTTAGAGGCTTGAGAATCATGTATTAGATTATACATTCAAAA
TTTTTCTTTGTGTCATTTTTAACACTATTTGCTAATTCTAAATCGCTAAACTAATCTTTAGTCTAGTACAACACCTCTTACTCCGCTCATGTATGAAACC
CCATGTTTTATTGTGTTATCATCATTATGTGCACTCATAAGCAAAAACTACATAATATATGGACTACTATAGCTTTCTTTTTGTTAGGATGAATTGTAGT
TTACTAATTGATTTCATGCGATAAGACTGAACCTTTGTGGTTGAGAGGTTATAAGGGACCGAGCGGTCCAACCTTCACCCATCTAAGTGCCAAATTCACA
AAGAGCGGGTTTTAATCGTCGAGCACCAGATTTCTAGAAGGGATGGGATTGATTGATCCCAAAGAGTGGATCGATTAACTAAGTGTCACGACGTCGAAGA
TTGTTTTTCAAACACCTTGGGGTCAAGCGGTCCACCTACTAGATCTATCAGTCCAGTTCTTGATGCTACGATTAGATTTTTTTTATCCAGTTTCATAACT
TATTTTATTTAACTGGGTATAAAACCCATAGAGACCTAATTTTTATTTTTACGTTTTTTTTTTTTGCAACTTTTTTGAGAGCTCTTTGTAAGCCACTATT
CTCTATTCTGAAGATTACAGTTCATTTATCTTGACAATTTGGAAAAGATTTCTAAAGCCTTTTACTTATTAACTAATTCAATTTGGAGTATATATTAACA
ACAACAAAATAACAAAATTAGTTTAATAGTTTGTTAACAAATTTCATTTTCTTATTTCCGATACAATAAAGAATTTTAACTTCTTTTTTTTAATATATTA
AGAACAACAAAATTAATAGAAAGAGGTTAATAGTTTAATATATTAATAAAAAGAGTTTGAATATATAAACAAAATAATTTCTTATTTATTGTATATACTT
CTTTTTTTAAGAAATTTTCTGATTCTATCTTTAAATATATTAACAAAATTATATTTGGTTAGTGACGACATCTTATGTTATACTCATGTGTTGCGATCAC
GTGAGTTAGTAATTTTGAAAACCCAATTTTTCTAATGAAAAAGATGTAGAATCACACGCTAATTACAAGACTTTGATCACAAATTTTATATACACCCATG
TATAGTCATAACATTCGAAGACATATCTAAGAAGGCAATAATCAGACTGAAGTTGTATTGGGAGAGAAAAAATTGGTAGATCGAATAAGTAGAAATACAA
AGCGTTGACAATATGTTAGTTAACCAAAAGAGGAGTAATTGTATTGATCATATTCGGTCCATGGATCAGCAATGAGTATGATGGTCAATATGGAGGAAAA
GAAAGAGTAATTACCAA
| Start of BLAST Alignment: | NT 1020 / Exon 5 of 6 |
| First 15 bp Perfect Match: | NT 1008 / Exon 5 of 6 |
BLAST Details: Query Sequence: 10708_RBD Length: (3817 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) i... 6215 2.5e-276 1 At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) i... 1078 1.6e-51 2 At1g43160 68414.t04537 AP2 domain-containing protein RAP2... 1001 4.8e-39 1 At2g27070 68415.t03034 two-component responsive regulator... 370 2.1e-07 1 Warning: Descriptions of 39 database sequences were not reported due to the limiting value of parameter V = 100. >At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI:166858 from [Arabidopsis thaliana] Length = 2138 Minus Strand HSPs: Score = 6215 (938.5 bits), Expect = 2.5e-276, P = 2.5e-276 Identities = 1257/1281 (98%), Positives = 1257/1281 (98%), Strand = Minus / Plus Query: 1650 AAAGCTCATTTCTCTCTTGCAGTCCTCATCGTTGGAGCTTAGAAGCCGTCGGCACAAGGT 1591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 AAAGCTCATTTCTCTCTTGCAGTCCTCATCGTTGGAGCTTAGAAGCCGTCGGCACAAGGT 60 Query: 1590 TCGTCTTTCTCTCATCCCTTTCCTCTTCCTTTGCGTGAATTCACCAGAAAATGTATATCT 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 TCGTCTTTCTCTCATCCCTTTCCTCTTCCTTTGCGTGAATTCACCAGAAAATGTATATCT 120 Query: 1530 ACCTTAGCGAGTCTGTCTAGTTTAGCGAATCTAGGATAATCTCCGGAAGACACTTTTGAA 1471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ACCTTAGCGAGTCTGTCTAGTTTAGCGAATCTAGGATAATCTCCGGAAGACACTTTTGAA 180 Query: 1470 TCATCACTGTTTTTGATCTCTGTTTCTTTCTCTAATTGTGTTGTTGTATTACTGTTGATG 1411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 TCATCACTGTTTTTGATCTCTGTTTCTTTCTCTAATTGTGTTGTTGTATTACTGTTGATG 240 Query: 1410 TNNNNNNNNNNNNNNNNNNNTGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCT 1351 | |||||||||||||||||||||||||||||||||||||||| Sbjct: 241 TAGAAGAAGAAGAAGAAGAATGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCT 300 Query: 1350 TGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGGTGAGTCTTTTTATCA 1291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 TGGTTTCCTTCCAAGGAAGAGAGCTAACCGTCACAGAGGAAAGGGTGAGTCTTTTTATCA 360 Query: 1290 AATGTAGATTCCTTGTTAGTGAAATGATTACTAGGGTTTTCATAAAGCTTCTCTCTTTTT 1231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 AATGTAGATTCCTTGTTAGTGAAATGATTACTAGGGTTTTCATAAAGCTTCTCTCTTTTT 420 Query: 1230 GCTCACTCACAAATATTGAATTCTTAAGTAGTGAATGAAATGGTTGATTTGATTCAAAAG 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 GCTCACTCACAAATATTGAATTCTTAAGTAGTGAATGAAATGGTTGATTTGATTCAAAAG 480 Query: 1170 GTTGTTCTTTTATTGTTTGTTTTGCTTATACGTTGTTGTTGGTTTATCAGTGAAGGCGTT 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 GTTGTTCTTTTATTGTTTGTTTTGCTTATACGTTGTTGTTGGTTTATCAGTGAAGGCGTT 540 Query: 1110 CCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGG 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 CCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGG 600 Query: 1050 TATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAGTAAGTGAACTTGTGTTTT 991 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 TATGACTCACATTGTCAGAGAAGTGGAGAAACCTGGATCCAGTAAGTGAACTTGTGTTTT 660 Query: 990 TTTCATTCTGATTTGTTTTGTGGAGGTTTTTGCGATTTAAAGTCGTCAACTTTGTGTTTT 931 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 TTTCATTCTGATTTGTTTTGTGGAGGTTTTTGCGATTTAAAGTCGTCAACTTTGTGTTTT 720 Query: 930 TATTGTTGTGTAGAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACA 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 TATTGTTGTGTAGAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACA 780 Query: 870 CCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTTGAGGTCT 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 CCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGAGGTTTGAGGTCT 840 Query: 810 TTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAGGTTCTACAAGAAC 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 TTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAGGTTCTACAAGAAC 900 Query: 750 TGGGCTAAGTCTAAGAAGAAGGCTTTCACTGGGTACGCTAAGCAGTATGACAGTGAGGAT 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 TGGGCTAAGTCTAAGAAGAAGGCTTTCACTGGGTACGCTAAGCAGTATGACAGTGAGGAT 960 Query: 690 GGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGT 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 GGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGT 1020 Query: 630 GTTTTGGCTCACACTCAGGTAAGTTTGCTTATTGAATGGAAGTGTATATCATAAACTCTT 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 GTTTTGGCTCACACTCAGGTAAGTTTGCTTATTGAATGGAAGTGTATATCATAAACTCTT 1080 Query: 570 CTGCACTACGTTCTTACTGACAATTCTATGTGACCTCTAATTACAGATCAGGAAGATGAA 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 CTGCACTACGTTCTTACTGACAATTCTATGTGACCTCTAATTACAGATCAGGAAGATGAA 1140 Query: 510 GGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGC 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 GGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGC 1200 Query: 450 CCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTCTT 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 CCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGCTGTCTT 1260 Query: 390 CCAGAAGTATCAGCAATGAGT 370 ||||||| || | ||||| | Sbjct: 1261 CCAGAAGGATGA--AATGATT 1279 >At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) identical to ribosomal protein GI:806279 from [Arabidopsis thaliana] Length = 2450 Minus Strand HSPs: Score = 1078 (167.8 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51 Identities = 526/812 (64%), Positives = 526/812 (64%), Strand = Minus / Plus
Border_2 (10708_LBU)
AAGAACCAATTGGTAATTACTCTTTCTTTTCCTCCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTGCAATTG
ATCTGTTTCTGGAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAGGTTGCTTGTATTG
GTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGG
TAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATTACTT
CTGTGGTTTATCTGAGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
GAAGGATGACTACTTGATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCC
TTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCA
CGAAGTAAGAGTTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATCTGTTGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTAT
GGAGTTTTCTTTTGCTTTTAGTTTGTTACTTTTTTGGAAGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTTGATGTGTTCTTTATCATTTATGAAAA
ACCAACCTGGAGCATAAAAAACAACAAAGAATCTGTCTTTGGTGGTGATATTGAAACTGCCTTTAATGCATTTCGAATTATCATTTGAAAATTGATACAA
AACCACAATTGTTACATTGGTGCTTCCAAGCTTATCAATCTTCCCTATGATGAAACAAGCATGCCCACTTCCACAACTTAAATCACATCTGCTGACACCA
ATAGGCAGTATCATATCATAAATCTATATGTCATTCACTCTAGGGCCTTATGAGTGAACTTCCAATAGAATTGTGGTTGGATCC
| Start of BLAST Alignment: | NT 931 / Exon 5 of 6 |
| First 15 bp Perfect Match: | NT 1044 / Exon 5 of 6 |
BLAST Details: Query Sequence: 10708_LBU Length: (1184 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) i... 4188 8.8e-185 1 At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) i... 1494 3.7e-63 1 At5g42445 68418.t04811 60S ribosomal protein L3 (RPL3C), ... 778 5.8e-30 1 At1g54520 68414.t05701 expressed protein 192 0.998 1 >At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI:166858 from [Arabidopsis thaliana] Length = 2138 Plus Strand HSPs: Score = 4188 (634.4 bits), Expect = 8.8e-185, P = 8.8e-185 Identities = 894/951 (94%), Positives = 894/951 (94%), Strand = Plus / Plus Query: 3 GAACCAATTGGTAATTACTCTTTCTTTTCCTCCATATTGACCATCATACTCAT-TGCTGA 61 | |||| ||| | | | |||| ||| || || | | | | || | | | Sbjct: 1191 GTACCA-TTGCCCAGAAGGTTGACTTTGCCTACAGTTT--CTTTGAGAAGCAGATCCCAA 1247 Query: 62 TCCATGTAGATTTCCCGGAC-ATGAAGCCATTTGCA--ATTGATCTGTTTCTGG--AAGG 116 | | | | |||| | | ||||| ||| | |||| | || || |||| Sbjct: 1248 TTGAAGCTGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGG 1307 Query: 117 GTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAG 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1308 GTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAG 1367 Query: 177 GTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTG 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1368 GTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTG 1427 Query: 237 CTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1428 CTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGT 1487 Query: 297 TGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGGTCAGTAGAAA 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 TGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGGTCAGTAGAAA 1547 Query: 357 TTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATTACTTCTGTGGTTTATCTGAG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1548 TTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATTACTTCTGTGGTTTATCTGAG 1607 Query: 417 TCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAGAAGGATGTGACTCCAATGGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1608 TCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAGAAGGATGTGACTCCAATGGG 1667 Query: 477 AGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGCTGTGT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1668 AGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGCTGTGT 1727 Query: 537 TGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCT 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1728 TGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCT 1787 Query: 597 TGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACATGGTCG 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1788 TGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCCTCCATTTTTGGACATGGTCG 1847 Query: 657 CTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAGTTGTT 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1848 CTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAGTTGTT 1907 Query: 717 TTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATCTGTTGCTACTTATCTCAGAG 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1908 TTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATCTGTTGCTACTTATCTCAGAG 1967 Query: 777 ATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGCTTTTAGTTTGTTACTTTTTTG 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1968 ATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGCTTTTAGTTTGTTACTTTTTTG 2027 Query: 837 GAAGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTTGATGTGTTCTTTATCATTTATG 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2028 GAAGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTTGATGTGTTCTTTATCATTTATG 2087 Query: 897 AAAAACCAACCTGGAGCATAAAAAACAACAAAGAATCTGTCTTTGGTGGTG 947 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2088 AAAAACCAACCTGGAGCATAAAAAACAACAAAGAATCTGTCTTTGGTGGTG 2138 >At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) identical to ribosomal protein GI:806279 from [Arabidopsis thaliana] Length = 2450 Plus Strand HSPs: Score = 1494 (230.2 bits), Expect = 3.7e-63, P = 3.7e-63 Identities = 488/684 (71%), Positives = 488/684 (71%), Strand = Plus / Plus