At1g49400 SYNGENTA 10844
Genomic Sequence (from TAIR)
aacaaaaaagattcgtattatttttaatgttatttagtttagttttactgtaatattgtttttaccgcccgtttaatgtttttttgcacactgcttttat tttaattgatggtttacggggttgaatataagtttgtgaaggtcttataagcgagggctaaaaaaataaaagaaaataaaaaaataaaaaaataagcgag cgcgttaagtaacaattagttaagttgggctttgtgtgagattcttaaaaagcccatctttacaaaacatgaaaccctagaacgaaacatttcactcttc ttct◄cttccaccatctcagattccccggcgaagattt►tgttcacagtttccggtgatcttctcctgtccgcccaaatttcagtatatctttgaagtaa aactttgttaatcagcaaaaaaaatATGAAGCCAGTGATAGGCACAGTGGTATCGAACAAGATGCAAAAATCTGTAGTGGTCGCCGTCGATAGACTCTTC CACAACAAAATCTACAATCGCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAgtaaattctctcg catttccttcttccctttcactctaatttcgtttgattccgtcttttaaatctgagccacttgaattaggctttgtgattgaacctctgaggctaagaaa tttgaaaatctggttgatgtgtagGTGAAGTTAGATCCATCAAGGCCTTTGAGCAAGAATAAGCATTGGATTGTTGCAGAAATCATCAAAAAAGCTCGAA TTTATTCTCCTAAAGCTGCTGCTGCTGCTGTTTCTGCTTCTGCTTCTGCTTCCTCAGCCTCCACTACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATC ATCTACTTCTTAAggtgattgattactttagtcctttacgtacatagatatctagtttcagctgatttttggaacttgatgagaattatcctattttatg gattttagtgagtcttaaagtattgatgtgtgacattatgcatattgttattagatacttgaacgttatggaatcgatagacttatcgtcctttttcttc ttactgcagttgttttaagagaaacgttgcatagcgaagcgagaaagttgctaggagttgttactatgagcatattgcatcgaagcttttggatcatgtc tgtgatatttgatttcctgagatgataatgagttatatgatggtactagattatctggtgaaagtagatgaataacacatgttaagatactctgtcttct tatgttattttggcaaatcatcagtgcattgccttttaagcagaagtgtgagatagtgatgagttgttattacattcgttattttgggtatggaacaatg agtgaaaatgtatctttggctctacaagttgtgacaccagtatgacaaactaaagatcagtaccaacaccaacatcagtgccttggtctttaacgcctga aattatgaatcttttctttagttagttagatatctataaagttacaaggttttgagtttttggagataattttttgtttgctacctatctatttatgttt tg
Border_1 (10844_LB1U)
AGAAGAAGAGTGAAATGTTTCGTTCTAGGGTTTCATGTTTTGTAAAGATGGGCTTTTTAAGAATCTCACACAAAGCCCAACTTAACTAATTGTTACTTAA
CGCGCTCGCTTATTTTTTTATTTTTTTATTTTCTTTTATTTTTTTAGCCCTCGCTTATAAGACCTTCACAAACTTATATTCAACCCCGTAAACCATCAAT
TAAAATAAAAGCAGTGTGCAAAAAAACATTAAACGGGCGGTAAAAACAATATTACAGTAAAACTAAACTAAATAACATTAAAAATAATACGAATCTTTTT
TGTTTTGTATCTTCTTTGTATTTATAGTTGTTGTGATTTTGAGTTTTGTTATTTCTATAACCTAGAATTGAAAGAGAGAATTCTTTTCTTAACATTATTC
ATTAGTAGAGCATAAAAACATACATCACTCATTTCTCTTATCCWMGTTTATAACAAAAACACAACACAAAAGCATAACATAGCTCTATGACACCTACAAG
TCATTTTTCTTACATGCTATAGGACAACACTTTTATAAACCTATTCACTCTAGATTCTYCAGGATTTAAGCAAAAGCAAAAAGCACTTAATTCACTACTC
CTTTAGATKGTAATTAACTTCCGATTCTTCTGCTTARKTTCTTGAATCTCTTTACCGKAGCTTTARTAACAAAACATACATTACTCAACAATAGTCCATA
TTAATCGAGTAGAAGTCACATAGCTCCACATGACAATTGCGGTAACCGCTATTTTCGTCATTTTCTCTGTGTTACAAGCTATCATTAACATGCCTTTGAT
AGAGTAGAAGTCACATAGCTCCACATGACAATTGCNGTAACCTTTATAACCTTTCATCCCAAAATCCATTCCACCGACAACAACGGGTTTGCTTTTATTT
TTAAACAATTAATCATTATTACTCCATGGGGNCCTAATAAGTAATAGTGAAATGCCTTTTTCACTATTGGTAATTTTTTAAATTTTGANAAATAATATAT
CAAATCGAAAGCCTCGAGAAGAGGAATTTCTCTATAGCTTTAAAATTTTAAAAATCAAATGGGTGGGA
| Start of BLAST Alignment: | < 119 / Upstream |
| First 15 bp Perfect Match: | < 119 / Upstream |
BLAST Details: Query Sequence: 10844_LB1U Length: (1068 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F13F21 51473 4578 1.3e-200 1 T20D16 9935 414 5.0e-10 1 F2K15 67266 399 2.1e-09 1 F10O5 60745 383 7.6e-09 2 Warning: Descriptions of 110 database sequences were not reported due to the limiting value of parameter V = 100. F13F21 51473 Length = 125,021 Plus Strand HSPs: Score = 4578 (692.9 bits), Expect = 1.3e-200, P = 1.3e-200 Identities = 958/1068 (89%), Positives = 966/1068 (90%), Strand = Plus / Plus Query: 1 AGAAGAAGAGTGAAATGTTTCGTTCTAGGGTTTCATGTTTTGTAAAGATGGGCTTTTTAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60873 AGAAGAAGAGTGAAATGTTTCGTTCTAGGGTTTCATGTTTTGTAAAGATGGGCTTTTTAA 60932 Query: 61 GAATCTCACACAAAGCCCAACTTAACTAATTGTTACTTAACGCGCTCGCTTANNNNNNNN 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60933 GAATCTCACACAAAGCCCAACTTAACTAATTGTTACTTAACGCGCTCGCTTATTTTTTTA 60992 Query: 121 NNNNNNNNNNNNNNNNNNNNNNNNNAGCCCTCGCTTATAAGACCTTCACAAACTTATATT 180 ||||||||||||||||||||||||||||||||||| Sbjct: 60993 TTTTTTTATTTTCTTTTATTTTTTTAGCCCTCGCTTATAAGACCTTCACAAACTTATATT 61052 Query: 181 CAACCCCGTAAACCATCAATTAAAATAAAAGCAGTGTGCAAAAAAACATTAAACGGGCGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61053 CAACCCCGTAAACCATCAATTAAAATAAAAGCAGTGTGCAAAAAAACATTAAACGGGCGG 61112 Query: 241 TAAAAACAATATTACAGTAAAACTAAACTAAATAACATTAAAAATAATACGANNNNNNNN 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61113 TAAAAACAATATTACAGTAAAACTAAACTAAATAACATTAAAAATAATACGAATCTTTTT 61172 Query: 301 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCTATAA 360 |||||||||| Sbjct: 61173 TGTTTTGTATCTTCTTTGTATTTATAGTTGTTGTGATTTTGAGTTTTGTTATTTCTATAA 61232 Query: 361 CCTAGAATTGAAAGAGAGAATTCTTTTCTTAACATTATTCATTAGTAGAGCATAAAAACA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61233 CCTAGAATTGAAAGAGAGAATTCTTTTCTTAACATTATTCATTAGTAGAGCATAAAAACA 61292 Query: 421 TACATCACTCATTTCTCTTATCCWMGTTTATAACAAAAACACAACACAAAAGCATAACAT 480 |||||||||||||||||||||||++||||||||||||||||||||||||||||||||||| Sbjct: 61293 TACATCACTCATTTCTCTTATCCACGTTTATAACAAAAACACAACACAAAAGCATAACAT 61352 Query: 481 AGCTCTATGACACCTACAAGTCATTTTTCTTACATGCTATAGGACAACACTTTTATAAAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61353 AGCTCTATGACACCTACAAGTCATTTTTCTTACATGCTATAGGACAACACTTTTATAAAC 61412 Query: 541 CTATTCACTCTAGATTCTYCAGGATTTAAGCAAAAGCAAAAAGCACTTAATTCACTACTC 600 ||||||||||||||||||+||||||||||||||||||||||||||||||||||||||||| Sbjct: 61413 CTATTCACTCTAGATTCTCCAGGATTTAAGCAAAAGCAAAAAGCACTTAATTCACTACTC 61472 Query: 601 CTTTAGATKGTAATTAACTTCCGATTCTTCTGCTTARKTTCTTGAATCTCTTTACCGKAG 660 ||||||||+|||||||||||||||||||||||||||++|||||||||||||||||||+|| Sbjct: 61473 CTTTAGATTGTAATTAACTTCCGATTCTTCTGCTTAGTTTCTTGAATCTCTTTACCGTAG 61532 Query: 661 CTTTARTAACAAAACATACATTACTCAACAATAGTCCATATTAATCGAGTAGAAGTCACA 720 |||||+|||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61533 CTTTAGTAACAAAACATACATTACTCAACAATAGTCCATATTAATCGAGTAGAAGTCACA 61592 Query: 721 TAGCTCCACATGACAATTGCGGTAACCGCTATTTTCGTCATTTTCTCTGTGTTACAAGCT 780 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 61593 TAGCTCCACATGACAATTGCGGTAACCGCTATTTTCGTCATTTTCTCTGTTTTACAAGCT 61652 Query: 781 ATCATTAACATGCCTTTGATAGAGTAGAAGTCACATAGCTCCACATGACAATTGCNGTAA 840 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 61653 ATCATTAACATGCCTTTGATAGAGTAGAAGTCACATAGCTCCACATGACAATTGCAGTAA 61712 Query: 841 CCTTTATAACCTTTCATCCCAAAATCCATTCCACCGACAACAACGGGTTTGCTTTTATTT 900 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 61713 CCTTTATAACCTTTCATCCCAAAATCCATTCCACCGACAACAACGGTTTTGCTTTTATTT 61772 Query: 901 TTAAACAATTAATCATTATTACTCCATGGGGNCCTAATAAGTAATAGTGAAATGCCTTTT 960 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 61773 TTAAACAATTAATCATTATTACTCCATGTAGTCCTAATAAGTAATAGTGAAATGCCTTTT 61832 Query: 961 TCACTATTGGTAATTTTTTAAATTTTGANAAATAATATATCAAATCGAAAGCCTCGAGAA 1020 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 61833 TCACTATTGTTAATTTTTTAAATTTTGATAAATAATATATCAAATCGAAAGCCTCGAGAA 61892 Query: 1021 GAGGAATTTCTCTATAGCTTTAAAATTTTAAAAATCAAATGGGTGGGA 1068 ||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 61893 GAGGAATTTCTCTATAGCTTTAAAATTTTAAAAATCAAATGTATGTGA 61940 >T20D16 9935 Length = 108,881 Plus Strand HSPs: Score = 214 (38.2 bits), Expect = 1.0, P = 0.64 Identities = 106/165 (64%), Positives = 106/165 (64%), Strand = Plus / Plus
Border_2 (10844_LB2D)
TTAAAACAACTGCAGTAAGAAGAAAAAGGACGATAAGTCTATCGATTCCATAACGTTCAAGTATCTAATAACAATATGCATAATGTCACACATCAATACT
TTAAGACTCACTAAAATCCATAAAATAGGATAATTCTCATCAAGTTCCAAAAATCAGCTGAAACTAGATATCTATGTACGTAAAGGACTAAAGTAATCAA
TCCCCTTAAGAAGTAGATGATGGAGGAATCTGAGACTGAGCAGAAGAGTCAGTAGTGGAGGCTGAGGAAGCAGAAGCAGAAGCAGAACCAGCAGCAGCAG
CAGCTTTAGGAGAATAAATTCGAGCTTTTTTGATGATTTCTGCACCAATCCAATGCTTATTCTTGCTCAAAGGCCTTGATGGATCTAACTTCACCTACAC
ATCAACCAGATTTTCAAATTTCTTAGCCTCAGAGGTTCAATCACAAAGCCTAATTCAAGTGGCTCAGATTTAAAAGACGGAATCAAACGAAATTAGAGTG
AAAGGGAAGAAGGAAATGCGAGAGAATTTACTCGATCGCCGATGTTGCAGGCGTCTTTGTCGTCGTGAGCCATGAATTTGGAAGTTCGTTTGACGTAGCG
ATTGTAGATTTTGTTGTGGAAGAGTCTATCGACGGCGACCACTACAGATTTTTGCATCTTGTTCGATACCACTGTGCCTATCACTGGCTTCATATTTTTT
TTGCTGATTAACAAAGTTTTACTTCAAAGATATACTGAAATTTGGGCGGACAGGAGAAGATCACCGGAAACTGTGAACA
| Start of BLAST Alignment: | < 86 / 5’ UTR |
| First 15 bp Perfect Match: | < 86 / 5’ UTR |
| Reverse Complement |
BLAST Details: Query Sequence: 10844_LB2D Length: (779 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g49400 68414.t05066 ribosomal protein S17 family prote... 3569 1.5e-156 1 At3g18880 68416.t02137 ribosomal protein S17 family prote... 639 2.6e-41 2 At1g06750 68414.t00641 hypothetical protein 196 0.85 1 At1g55000 68414.t05755 peptidoglycan-binding LysM domain-... 194 0.90 1 >At1g49400 68414.t05066 ribosomal protein S17 family protein similar to 40S ribosomal protein S17 GI:1620985 from [Nicotiana plumbaginifolia] Length = 1163 Minus Strand HSPs: Score = 3569 (541.5 bits), Expect = 1.5e-156, P = 1.5e-156 Identities = 733/779 (94%), Positives = 733/779 (94%), Strand = Minus / Plus Query: 779 TGTTCACAGTTTCCGGTGATCTTCTCCTGTCCGCCCAAATTTCAGTATATCTTTGAAGTA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 TGTTCACAGTTTCCGGTGATCTTCTCCTGTCCGCCCAAATTTCAGTATATCTTTGAAGTA 90 Query: 719 AAACTTTGTTAATCAGCNNNNNNNNTATGAAGCCAGTGATAGGCACAGTGGTATCGAACA 660 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 91 AAACTTTGTTAATCAGCAAAAAAAATATGAAGCCAGTGATAGGCACAGTGGTATCGAACA 150 Query: 659 AGATGCAAAAATCTGTAGTGGTCGCCGTCGATAGACTCTTCCACAACAAAATCTACAATC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 AGATGCAAAAATCTGTAGTGGTCGCCGTCGATAGACTCTTCCACAACAAAATCTACAATC 210 Query: 599 GCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 GCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCG 270 Query: 539 GCGATCGAGTAAATTCTCTCGCATTTCCTTCTTCCCTTTCACTCTAATTTCGTTTGATTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 GCGATCGAGTAAATTCTCTCGCATTTCCTTCTTCCCTTTCACTCTAATTTCGTTTGATTC 330 Query: 479 CGTCTTTTAAATCTGAGCCACTTGAATTAGGCTTTGTGATTGAACCTCTGAGGCTAAGAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 CGTCTTTTAAATCTGAGCCACTTGAATTAGGCTTTGTGATTGAACCTCTGAGGCTAAGAA 390 Query: 419 ATTTGAAAATCTGGTTGATGTGTAGGTGAAGTTAGATCCATCAAGGCCTTTGAGCAAGAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 ATTTGAAAATCTGGTTGATGTGTAGGTGAAGTTAGATCCATCAAGGCCTTTGAGCAAGAA 450 Query: 359 TAAGCATTGGATTGGTGCAGAAATCATCAAAAAAGCTCGAATTTATTCTCCTAAANNNNN 300 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 451 TAAGCATTGGATTGTTGCAGAAATCATCAAAAAAGCTCGAATTTATTCTCCTAAAGCTGC 510 Query: 299 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCAGCCTCCACTACTGACTCTTCTGC 240 ||||||||||||||||||||||||||||| Sbjct: 511 TGCTGCTGCTGTTTCTGCTTCTGCTTCTGCTTCCTCAGCCTCCACTACTGACTCTTCTGC 570 Query: 239 TCAGTCTCAGATTCCTCCATCATCTACTTCTTAAGGGGATTGATTACTTTAGTCCTTTAC 180 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 571 TCAGTCTCAGATTCCTCCATCATCTACTTCTTAAGGTGATTGATTACTTTAGTCCTTTAC 630 Query: 179 GTACATAGATATCTAGTTTCAGCTGATTTTTGGAACTTGATGAGAATTATCCTATTTTAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 GTACATAGATATCTAGTTTCAGCTGATTTTTGGAACTTGATGAGAATTATCCTATTTTAT 690 Query: 119 GGATTTTAGTGAGTCTTAAAGTATTGATGTGTGACATTATGCATATTGTTATTAGATACT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 GGATTTTAGTGAGTCTTAAAGTATTGATGTGTGACATTATGCATATTGTTATTAGATACT 750 Query: 59 TGAACGTTATGGAATCGATAGACTTATCGTCCTTTTTCTTCTTACTGCAGTTGTTTTAA 1 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 TGAACGTTATGGAATCGATAGACTTATCGTCCTTTTTCTTCTTACTGCAGTTGTTTTAA 809 >At3g18880 68416.t02137 ribosomal protein S17 family protein similar to 40S ribosomal protein S17 GB:Y08858 from [Nicotiana plumbaginifolia] Length = 1048 Minus Strand HSPs: Score = 639 (101.9 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41 Identities = 151/180 (83%), Positives = 151/180 (83%), Strand = Minus / Plus