At1g08840 SYNGENTA 110058
Genomic Sequence (from TAIR)
cgtcgccattgctttctacttcgccgtgcctggttagttttcggaatctgattttcatttccatttcgttccttctgaattctcaactttgtctgcgatt ttcagaggtagcgaagttcgtttatggaagcttctgctgagtctaggtttgtggaagctccattaattttggaatttactggaatttccggggattcttc gtcaactactttcaggacttgttgttgattctcacagcgtgatcctgagaaaggtattttacttttatgctttgttcttttgaatttcagattaagatat ataagaatccgttatacaaaattacaatgaagattatatgaagtttcgaagtttcaaggcaaagttaatatgcacgaagtttatcagctccatcaaaatt tcagggtgccaagtattagccattggaaATGCCACCAAGAAAGAAGCCCAAGTCTTCAGCTTTGAAATCAAACAAACAATCTTCAGCTAATCATTCGTCA CAACCTTCCACCTTTGGCATCCAGCAGTTGTTCCTTCGACATATTCAGAACTCCCAATCAACTTCCAACTCTCATACCTCCACTGCTGACCCAGTTGATC AACAGAATGTGAATGGTCTTGCCTCTGACACTGCAGTTTTAACGCCTCAAAACCCTCTAGGCACATCGAATGAGAAACCTGATGAGTCCAAAGATATGGA CCAGCAACTCACGGAGGCATCTCCTAAGATCTCCAAAAACCTGAAGCGCTTCTCTCCTGGAATGgtagtttcttttcttatattcccttatattctaatt taatagtttgaatgggtatgtttttctccttaattgctggttgatgtaattgcaattaccctataatatctgctcacatgattgagtcccttgtggtcgt ataattcttacatgcttcttttatgttcatagCTGATAAAGCAAAGTCAAGATGACTGTGGTGGTGAGATAACTTGGAAAATCTCTCCAGTAAATGAAAG ACTTCGGGCAGCTGCTAAGAACATTCCTAAGATGATGGACTTAACAGAAAATTCACTAGGGgttaaatcttctaccattcgcccttgctctctgaataag gcatgtttacggctttaaattttcttttaaaactaattcttggttcggtagctgtttcatttcccttcttcacatcgaaactgacagcagctagtgcagA AGCAATGTCCTACATCAGGTATAACTTCCAAGGTTGAGCAATGGTTATCTTCACCCTCAAAAAAAGCTTCCAAAAGACCAGCTTTTGCAACAAATAGGGT CATGGAAAGGGTAAATCCTTCCCCAGATGCAGAGTTTGAAATTGTTAACACTTCAAGTAGTGGAAACAGTCCTTTCCAGACCCCACCGTCTCTTTCATGC CCTCACAACAAGgtaaattactttcctgataaacagatttatgagcacattttatctacttcttaactttgctctgtttatgttcagCTTCCTTGTACTG TAACGTGCAGCGGAGCTTGTGGATCTATGGGGGCTGGACAACATAAAAAGgtatgatttgagacttgatgcagtcttttagatgcttatgaaaggcgtat ttagagtattatgtaaaatgttttgtcacttccacctgtggttgatcaagactacatgcattatttcctctagaacttgttttctacagcgtttcaaatt attatttcagcatattgcctctttttgtagGCCTTGCTTGAACTATTAGATCAAGTGGAGGATGTCATCGCAGTTGATGACAAAACAACTGATGATGTGG GGATTGTGATGCCTCAAGCTCGAGTTAAAGATGATATCATCTCTTCTGTTGTTGATTGCGCTGTAGATGAAGGGCCAGTTTCTCTACCAAAAATGCAGAA TTCCATAAATCCAGATAGCTATTTCCTTGTATTGGAGgtaaagttggccttaatcgaacttggggggtagcaatgtggttttcatgtaaaagttactcat tgtccagagttgtaactacagGTATCGGAGAAACGTGGCTCGGGTAGCTCATCTAAGGGTCAATGTCCTTATAAGgttcgtcatttactcatagattttc tcttgtacatgctcatatttgctgactaaatttctctcagGTTCTTCGCTTGCTAGATGAGCACACAGGAGTGGAATGCGCTTTGTATCTCTGGGATGAA TGgtactttattttgtatgaaatttagggtgatctctgcttttcagatcaaattttttcaaaaatagcaagtggtcgttacttttccattctatttttga tgaagctattacaccttgttctttaatgtcttggtcttgaatgtttttgccattattagtttccaaatgtcggctgattgcatactacacattttcttgt tgtttatctttctattctcttagcatatgggacatttatatatcatccattcatttcccagttggttgaaacttgatttcggaacactgaaggcttattg ttaccagGTTTTACAGCACTGTATCACCAGGAGATTCAATCAATGTTATTGGAGAGTTTGATGGGGATGGCAAGTGTGACGTGGACCGTCAAAACAATTT CTTAATTGTTCATCCTGATACCCTTGTTGCCGGAACTAGGgtattattttcgtcttccctttaaggactctgtctacaactaccaatcttctttgcactt aatttagttgttgttgtgaataactgttctacctttcagGTTGCTGCAAGTTTTGGTTGCCCAAGGCGAACCGTGCTAGATGAGAGGCTCAGATCCAATG AACACGCTACAGTAGCCTTACTTGGAACCTTGCAACACCAAGTTTTTCAGgtttactacattatggaatctttttgatgagaattctattggaaaatgag tgtttttgtttgatttttttgcaatgtactgatctgtgctatccatttcctttgttttccagGCTGGTCTCTCGCAAGAATCTCCATCTGTAGATGGTTT GCAAGAATATGCAAGCACAGTGATTGAGAAAAGTATTGAGAGCTTATATGC◄ATGC◄GGAGgttgattactac►attatgtgttcctattatttgaaggt tcatgcagttatcatatagctaggatacctcctattcatatcagaattttgagttaatatagctaggacacctcttattaatattagaattttaaattga aatagatatgatacctgtttgttctatgtgcttttaagattcacattacttcagaattttgttttgcttttaataccaaaatgctacgagttgacccaat gaaatacacttaatcattttcttatttgatcatatgttctctacagTGCATGAAGGAGACGTGAGATCAACTTTATTTAAAGCTATCCCGAAAATGTTGA ATTGGATTGAGCATTTCAGATATTCGAAGgtacacttgtattttcctatttatgattctttctttagttactaatggctgttatatcattgtttcccttg aacgtaattgttttggctactcttctggttggaatcgtcagatatttttgtagtgttgcacgtacatattagactgcattatgctctaatgtgtgttgga cttgttttctcgtgaatgtgcttgtttggtaatcacatactttcatattatctgttatgctgcctttcacctacagatatccaattacaaagtacattaa gatgcttgtattagcagtcactttatatttattttactgtgtcagtcccctttctagcaactctatgggcagaaacatcttaattcgtggcatgttgttt ataaacagGACTCAGAAGTATCAAAAGTTGATTTTGGTTCTACCATTGGGAAGAAAGCTGTTAAGGTATCAGAGgttagagctcttcctactctctccct tcttcttgggatttcatttgacatcattgcagaataatcgttgtttattaagcaatctcctccaatgagacttctattatgtatataaacaaattgctta cctcagGTAATTGATATTGAGGAGATGTCATGGGCCCCTAAATATGGTCTCAAAGGGATGATCGATGCTTCGGTCAGAGTGATAGTTGAATCTGACATGA ACACAGTGAATGAGAAGATAATGCCCCTTGAGTTTAAATCTGGAAAAGCTCCTAGTGGTCAGgtctgtgtggagatctatctagatatacagttgaaatt tgaaagttccaaaagcttataaaaactacgcgcttggtctttattgtgttatgcagTCATCAATAGAGCATTCTGCACAGGTGATCCTGTACACGCTCCT TATGTCTGAGAGgtgcttatgtgctgcctttctttttttctttttgctggaaaacggacagcagtttacactttcattcatatatctcattctccacttt gcagGTACCTGAAGCATATTGACAATGGCCTTCTGTACTATCTACAGTCAGATCAGACCCAGgtcagtcaagatttgtgttcctttcttcggtcttgaga tttggggagtgactaagctttctttgttcacttgtaaagGGAATTTCTGTTCAACGATCAGATTTGGTGGGTCTGATTATTCGTCGCAATGAACTTGCAA ATGACATTCTTGTGGCGTCAACAACCCAGCAACTGCCGCCGATGTTACGGgtatgctctgatgtccagtgatgacaatttctctagggaatattagataa ttaaattatttattattttgatgctagaacccaaacatatgccggaactgtcgccatctggatgtttgcacaatttatcataaggtattttctcgtttct atgattaataatgctcgaagtcaaatatttacattttagggtattaggttctacatgtttaagcatatggggttaacattttaatatgcatgttatgatc tgacttgatggatgtattccactcgctaaataagtaatcaaccgttgatttaaatcacattcttgatactagtcacctgaaactgaatttccattttgtt atttgttgcggtatattatagtaagctttttcttagtcatagttattttgcatgtaattcctgagagtacactacatttttcaagcatttttggggaggt gttgaacgtccatcttcatggtgttgaaccgtcatcttttgaagcttctaaaacatcttgtctgcttgccccagGCAGATGGTGGAAACACAGAGAGTAG CGGACTTGGTGATGTCTTTGACACACATGTTTCTCATCTATCAACTTTACATTTCAATTTCCTCCGACACTGGGACAGGCTAATTGACTTGGAAGGTAGA GAGATGCAGgtcagccttgaatacaaagttgattgtttactggggtacaaagttaaggatttttccttacttggcgatcttatgtctatgtttgttttca gCTTCTACGGAAAGATATTGCGCATCCACATGGTTCAAAGGGCAGCCACTCAGCTAGTTATCTTTCTTCAATGGTTCTTGACGTGACAAATGGGTTTCAG CATCATAACTCTCATAAAGAAACTAGATTCATCTATCGTTTTGTACGTCAAAAATCATCTGAATCTAGAGAAAGAGTAACCAGTGAAGATATGATTAGGA CTGGAAACCTTGCAACTGATGACCTGGATTGCAAACTTAGAACTGGAGATCGTGTGgtacaatatttcttgattgttcttatatcatggttaatttgaag ttttgaaccaataaatttagtttcaccattaagtttagttgcaccagcttttctttctggcgattttttatttcactcttagtttatgatgttccccttt tgttggtttaaattttcatttccagATTCTTCGCACAGAAGTCAGCCACCTGACCGTTGCAAATGGGATTATAGCAGATATTAGTCGCACACATATATCA gtaagcacatacatcctggattttcttttaacagtctgtagatttagctatgtttgtctggtacaatatatcttgatgttcttatgtctaaagagtttgg gattatccttttgctatgtcaatccttagGTTTCTTTATCCAAGCGATTACGTCTTCCTTGGAGCGAACCTTCTTCTGAGGTATCAAATCTCTCTCATGA GTTATGGAGAATTTACAAGGATGAATTCATGACATCATTTTCGGTTATGAGgtgattttgtaatttattgttttccatttattgatcctacctacatggg ctgtcatgatattgattcacgatcttcatattgttcaagGTTCAATCTCATGCAGCTTTTCGTACAAAATGGACATAACATCAGGAAAATGATTGTGGAT CTCGAGgtagattgtcttgttcatctgttttcagatttctcctagacgagatgatgcatttgtttcttatacccttcttcacatggttgttttctcttcg tttctttttccatgtctctgtagCCTCCTAGATTTGACAATGGATCTATACTGAGCCAGGATCCTGCAATATCATATATTTGGTCAGAAAAGAGTCTGAA TAATGATCAGCGCCAAGCTATACTTAAGgtcattgcatgattattttccatcaaatctcatgttgaacgtgctatacttagggcatgtctgaaggacact ctttgttctttgacagagctcataaaagacttgctttcttgctttattttcagATACTCACTGCAAAGGACTATGCTTTGATATTAGGAATGCCTGGAAC AGGAAAAACCTCCACAATGGTTCATGCTGTGAAAGCTTTGTTGATCAGAGGCTCATCTATTCTGCTTGCATCGTACACAAACTCTGCTGTTGATAATCTA CTTATCAAACTAAAAGCACAGgtccttatctcgtagccaaccttttttttttctgaattaaattttcattcagctctaaaaggataggaagaatttatcg gaaaatcaactgataaactgcatgtgttgttctttagaaaaagtgaagaaaaaaacatgtatttcttcaagtctctacttttagacatgtaggaacactt tcatacacatgacatactgttgaaaaacacttgtagGGAATTGAGTTTCTACGTATTGGTAGAGACGAGGCTGTACACGAAGAAGTTCGAGAAAGTTGCT TTTCAGgtttgctatatattcttcctactatcgttgcttctaagtgttctcagtgtatttgagacttatctttgtgacagCCATGAATATGTGCAGTGTC GAGGACATAAAGAAAAAGTTGGACCAGGTCAAAGTTGTGGCCTCTACATGTTTGGGAATCAATAGTCCTTTGCTTGTGAATAGGCGATTTGATGTATGCA TTATTGATGAAGCTGGCCAGATTGCCCTCCCTgtatgatctctcaattcttcccaatagtttgagtcaaaatgcagttcttacaatggctatggaattag ataacagattttttatcttgcgtaatacaaaaaatttacccagtggcccctatttgacaaaattatcttatgtacaaaaattgaaatttagagccgacaa agttgaatttgaagtgaataatattaataaatgcgcggtttcttggactgatcagGTTTCGATAGGGCCCTTGCTGTTTGCATCTACCTTTGTACTTGTT GGTGACCACTATCAACTACCGCCACTGGTGCAGgtaagcatttacaccttttttgacatacctctgtttttttcctgtagtttcagcatcattgttgtgt tgatgaaagcagAGTACAGAGGCTAGAGAGAATGGGATGGGAATAAGCTTGTTTCGCAGGTTATCAGAAGCCCATCCTCAGGCAATTTCAGTGTTACAAA ACCAGgttgccgtatctactaagatgaaactatgttagtacgtgttgttaataggtatgcctttctgctttgttgagacatcttctatgtgcagTACCGA ATGTGTCGAGGTATTATGGAACTATCAAATGCCTTGATATATGGAGACAGATTATGCTGCGGTTCTGCTGAAGTAGCTGATGCCACACTTGTGCTTTCTA CCTCCAGTTCTACTTCGCCATGGCTTAAAAAGgtcagtgtgttgttcttaaacatttataagtagaggcatctttaagcaactaagaacattttatcaca tctgtgtaaacctagatctgtgtatataatatgttccttctgcttaaaactctggatacctgggcatttgattatgcaactagccttggcctggacagcc tatgaaaatcttaacaccactttcagatattgatgcaatgctttatttaattagacaaagggacaaagcatttcagcttggctccagtcgcttgctttac aatatttgttatgttgcacattgactcggtgtaggcgttgtccactaataatctaattagcatcttaacttatatttgtttccatcagGTTCTGGAGCCA ACAAGAACAGTTGTATTTGTTAATACAGgtttttggctacttactagttgctttttttttcacatgagcgctttgccatatgggctggagttttcacgag actatatgatatgtttttgtagATATGCTGCGTGCTTTTGAAGCTAGGGATCAGAATGCGATCAACAATCCAGTTGAAGCTTCCATAATAGCTGAGgtac tgttaagtatgcaagatgcatttaaacttatgaaaaagtgggctaactgctttacttagATTGTAGAGGAGCTAGTTAACAATGGAGTGGATAGTAAAGA TATTGGAATCATTACTCCTTATAACTCACAAGCCAGCCTCATTCAACATGCCATTCCGACAACTCCTGTGGAGATACATACTATTGACAAATATCAGgtt tgcctctaggacctaccgttcttcttttcatgactatcttgatttggcaagtgctcgataaccaacgtttgatgagctcacattttgtagGGAAGAGATA AAGACTGCATATTGGTATCTTTTGTGAGATCGCGAGAGAAACCAAGGAGCTCTGCTTCTTCACTGCTCGGAGATTGGCATAGGATCAACGTTGCTTTGAC ACGAGCAAAGgtgagactgagagaacaactgatgtggtgttgagtaatgttgtttattccatcgatcattgattgaaatttgtttgggtttgacagAAAA AGCTGATAATGGTGGGATCACAAAGAACACTCTCAAGAGTTCCACTTCTGATGCTTCTTCTAAACAAGGTTAAGGAGCAGTCAGGTATCTTGAATCTGTT GCCGGGAGATTTAAAACCATAAcaactcatcaagaaacgtttcaaatatcacaattttaacttgtatctccatttttgtccaaaaggaatgataatgtat aatcgatttactttccgagtctgaatttgttgataagaaagaaatcaggagagcatgaatcacttgcataatgacatgtaacagaaaagcggagatattg taatgatggagaagtttcatttgaaggttagctcagttaacgttatgacagtagattttgaacgaacaaagaagtttgtgtttgtaaaaacattcgcata ttgaagtaccatatccaggactcttgttacctttaagaacttataacagtaaatcaactcttttttattcatgaaataataaaagtacggaattttctct gttttctgtctgaattaaaaatgctttgagccacactaagctcataggtttttagccacacaccagaagatacacacaactaccaaacccaggtctaagg ttg
Border_1 (110058_RB)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAAYYTMACWSMGGARAYRRMTATGACCATGA
TTACVCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATAAGCTCTCAATACTTTTCTCAATCACTGKGCTTGSATATTCTTGCAAACCATCTACAGATGGAGATTCTTGCGAGAGACCAGCCTGGAAAA
CAAAGGAAATGGATAGCACAGATCAGTACATTGCAAAAAAATCAAACAAAAACACTCATTTTCCAATAGAATTCTCATCAAAAAGATTCCATAATGTAGT
AAACCTGAAAAACTTGGTGTTGCAAGGTTCCAAGTAAGGSTACTGKAGCGTGTTCATTGGATCTGAGCCTYTYATYTAGCACGGTTCGCCTTGGGCAACC
AAAACTTGCAGCAACCTGAAAGGTAGAACAGTTATTCACAACAACAACTAAATTAAGTGCAAAGAAGATTGGTAGTTGTAGACAGAGTCCTTAAAGGGAA
GACGAAAATAATACCCTAGTTYCSGCAACAAGGGTATCAGGAWGAAMAAWTAAGAAATTGTTYTGAYGGTCCWYGCTCRCACTKGCCATCCYCATMAARM
TCTCMAATWMCAGKTKMTTGRRYCATCCYGRWGRTASAGTSCTKTAAWASCTSGTAMCAAYAAKYCTTSAGTGCTWSCGTCMMATCAAGWTKSAWCCMAM
TGGGAAATGRMYGGATCSRTATAKAARWGWCCCAKATKYTAAGAGAATAN
| Start of BLAST Alignment: | NT 2627 / Exon 10 of 33 |
| First 15 bp Perfect Match: | NT 2623 / Exon 10 of 33 |
BLAST Details: Query Sequence: 110058_RB Length: (850 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g08840 68414.t00875 DNA replication helicase, putative... 2722 2.2e-117 1 >At1g08840 68414.t00875 DNA replication helicase, putative similar to helicase [Xenopus laevis] gi|18845092|gb|AAL79550 Length = 8791 Minus Strand HSPs: Score = 2722 (414.5 bits), Expect = 2.2e-117, P = 2.2e-117 Identities = 554/650 (85%), Positives = 622/650 (95%), Strand = Minus / Plus Query: 849 TATTCTCTTARMATMTGGGWCWYTTMTATAYSGATCCRKYCATTTCCCAKTKGGWTSMAW 790 ||||||||||++||+||||+|++||+||||++ ||||+++|||||||||+|+||+|++|+ Sbjct: 1985 TATTCTCTTAGCATATGGGACATTTATATATC-ATCCATTCATTTCCCAGTTGGTTGAAA 2043 Query: 789 CTTGATKKGACGSWAGCACTSAAGRMTTRTTGKTACSAGSTWTTAMAGSACTSTAYCWYC 730 ||||||++ ||++| ||||+|||++||+|||+|||+||+|+|||+||+|||+||+|++| Sbjct: 2044 CTTGATTT--CGGAA-CACTGAAGGCTTATTGTTACCAGGTTTTACAGCACTGTATCACC 2100 Query: 729 RGGATGRYYCAAKMAMCTGKWATTKGAGAKYTTKATGRGGATGGCMAGTGYGAGCRWGGA 670 +||| |+++|||++|+ ||++|||+||||++||+|||+|||||||+||||+|| |++||| Sbjct: 2101 AGGA-GATTCAATCAA-TGTTATTGGAGAGTTTGATGGGGATGGCAAGTGTGA-CGTGGA 2157 Query: 669 CCRTCARAACAATTTCTTAWTTKTTCWTCCTGATACCCTTGTTGCSGRAACTAGGGTATT 610 ||+|||+||||||||||||+||+|||+||||||||||||||||||+|+|||||||||||| Sbjct: 2158 CCGTCAAAACAATTTCTTAATTGTTCATCCTGATACCCTTGTTGCCGGAACTAGGGTATT 2217 Query: 609 ATTTTCGTCTTCCCTTTAAGGACTCTGTCTACAACTACCAATCTTCTTTGCACTTAATTT 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2218 ATTTTCGTCTTCCCTTTAAGGACTCTGTCTACAACTACCAATCTTCTTTGCACTTAATTT 2277 Query: 549 AGTTGTTGTTGTGAATAACTGTTCTACCTTTCAGGTTGCTGCAAGTTTTGGTTGCCCAAG 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2278 AGTTGTTGTTGTGAATAACTGTTCTACCTTTCAGGTTGCTGCAAGTTTTGGTTGCCCAAG 2337 Query: 489 GCGAACCGTGCTARATRARAGGCTCAGATCCAATGAACACGCTMCAGTASCCTTACTTGG 430 |||||||||||||+||+|+||||||||||||||||||||||||+|||||+|||||||||| Sbjct: 2338 GCGAACCGTGCTAGATGAGAGGCTCAGATCCAATGAACACGCTACAGTAGCCTTACTTGG 2397 Query: 429 AACCTTGCAACACCAAGTTTTTCAGGTTTACTACATTATGGAATCTTTTTGATGAGAATT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2398 AACCTTGCAACACCAAGTTTTTCAGGTTTACTACATTATGGAATCTTTTTGATGAGAATT 2457 Query: 369 CTATTGGAAAATGAGTNNNNNNNNNNNNNNNNNNNGCAATGTACTGATCTGTGCTATCCA 310 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2458 CTATTGGAAAATGAGTGTTTTTGTTTGATTTTTTTGCAATGTACTGATCTGTGCTATCCA 2517 Query: 309 TTTCCTTTGTTTTCCAGGCTGGTCTCTCGCAAGAATCTCCATCTGTAGATGGTTTGCAAG 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2518 TTTCCTTTGTTTTCCAGGCTGGTCTCTCGCAAGAATCTCCATCTGTAGATGGTTTGCAAG 2577 Query: 249 AATATSCAAGCMCAGTGATTGAGAAAAGTATTGAGAGCTTATATGCTAGC 200 |||||+|||||+|||||||||||||||||||||||||||||||||| || Sbjct: 2578 AATATGCAAGCACAGTGATTGAGAAAAGTATTGAGAGCTTATATGCATGC 2627
Border_2 (110058_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACMCTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTATGTGTTCCTATTATTTGAAGGTTCATGCAGTTATCATA
TAGCTAGGATACCTCCTATTCATMTCASWMKWYKRAGTTAATATAGCTAGGACACCTCTTATTAATATTAGAATTTTAAATTGAAATAGATATGATACCT
GKTTGTTCTATGTGCTTTTAAGATTCACATTACTTCAGAATTTTGTTTTGCTTTTAATACCAAAATGCTACGAGTTGACCCAATGAAATACACTTAATCA
TTTTCTTATTTGATCATATGTTCTCTACAGTGCATGAAGGAGACGTGAGATCAACTTTATTTAAAGCTATCCCGAAAATGTTGAATTGGATTGAGCATTT
CAGATATTCGAAGGTACACTTGTATTTTCCTATTTATGATTCTTTCTTTAGTTACTAATGGCTGTTATATCATTGTTTCCCTTGAACGTAATTGTTTTGG
CTACTCTYSTGGAWRRAATACRCARAWATTTTTGNAGNGNTGCACGTACATATTAGACTGCATTATGCTCTAATGNGNGNNGGACTTGGNTTTCTCGNGA
ATGNGCTTGGNTNGGAATCACANACTTTCATATTATCTGGNATGCTGCCTTTCACCTACAGANATCCAANTACAAAGNACATTAAGATGCTNGGATTAGC
AGCACTTTATANTAATTTNACTGGGGCAGCCCCTTNCTAGCACTCTATGGGCNGAAACCATCNTAATTNGGGGNANGGTGNNNATAA
| Start of BLAST Alignment: | NT 2643 / Intron 10 of 32 |
| First 15 bp Perfect Match: | NT 2643 / Intron 10 of 32 |
BLAST Details: Query Sequence: 110058_LB Length: (887 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g08840 68414.t00875 DNA replication helicase, putative... 3197 6.1e-139 1 At4g02300 68417.t00283 pectinesterase family protein cont... 242 0.018 1 At4g09620 68417.t01508 expressed protein hypothetical pro... 207 0.53 1 At4g15790 68417.t02266 expressed protein 203 0.68 1 >At1g08840 68414.t00875 DNA replication helicase, putative similar to helicase [Xenopus laevis] gi|18845092|gb|AAL79550 Length = 8791 Plus Strand HSPs: Score = 3197 (485.7 bits), Expect = 6.1e-139, P = 6.1e-139 Identities = 668/732 (91%), Positives = 685/732 (93%), Strand = Plus / Plus Query: 159 ATTATGTGTTCCTATTATTTGAAGGTTCATGCAGTTATCATATAGCTAGGATACCTCCTA 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2644 ATTATGTGTTCCTATTATTTGAAGGTTCATGCAGTTATCATATAGCTAGGATACCTCCTA 2703 Query: 219 TTCATMTCASWMKWYKRAGTTAATATAGCTAGGACACCTCTTATTAATATTAGAATTTTA 278 |||||+|||++++++++||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2704 TTCATATCAGAATTTTGAGTTAATATAGCTAGGACACCTCTTATTAATATTAGAATTTTA 2763 Query: 279 AATTGAAATAGATATGATACCTGKTTGTTCTATGTGCTTTTAAGATTCACATTACTTCAG 338 |||||||||||||||||||||||+|||||||||||||||||||||||||||||||||||| Sbjct: 2764 AATTGAAATAGATATGATACCTGTTTGTTCTATGTGCTTTTAAGATTCACATTACTTCAG 2823 Query: 339 AATTTTGTTTTGCTTTTAATACCAAAATGCTACGAGTTGACCCAATGAAATACACTTAAT 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2824 AATTTTGTTTTGCTTTTAATACCAAAATGCTACGAGTTGACCCAATGAAATACACTTAAT 2883 Query: 399 CATTTTCTTATTTGATCATATGTTCTCTACAGTGCATGAAGGAGACGTGAGATCAACTTT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2884 CATTTTCTTATTTGATCATATGTTCTCTACAGTGCATGAAGGAGACGTGAGATCAACTTT 2943 Query: 459 ATTTAAAGCTATCCCGAAAATGTTGAATTGGATTGAGCATTTCAGATATTCGAAGGTACA 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2944 ATTTAAAGCTATCCCGAAAATGTTGAATTGGATTGAGCATTTCAGATATTCGAAGGTACA 3003 Query: 519 CTTGTATTTTCCTATTTATGATTCTTTCTTTAGTTACTAATGGCTGTTATATCATTGTTT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3004 CTTGTATTTTCCTATTTATGATTCTTTCTTTAGTTACTAATGGCTGTTATATCATTGTTT 3063 Query: 579 CCCTTGAACGTAATTGTTTTGGCTACTCTYSTGGAWRRAATACRCARAWATTTTTGNAGN 638 |||||||||||||||||||||||||||||++||| +++||| ||+|+||||||| || Sbjct: 3064 CCCTTGAACGTAATTGTTTTGGCTACTCTTCTGGTTGGAATCGTCAGATATTTTTGTAGT 3123 Query: 639 GNTGCACGTACATATTAGACTGCATTATGCTCTAATGNGNGNNGGACTTGGNTTTCTCGN 698 | ||||||||||||||||||||||||||||||||||| | | ||||||| ||||||| Sbjct: 3124 GTTGCACGTACATATTAGACTGCATTATGCTCTAATGTGTGTTGGACTTG-TTTTCTCGT 3182 Query: 699 GAATGNGCTTGGNTNGGAATCACANACTTTCATATTATCTGGNATGCTGCCTTTCACCTA 758 ||||| ||||| | | ||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 3183 GAATGTGCTTGTTTGGTAATCACATACTTTCATATTATCTGTTATGCTGCCTTTCACCTA 3242 Query: 759 CAGANATCCAANTACAAAGNACATTAAGATGCTNGGATTAGCAG-CACTTTATANTAATT 817 |||| |||||| ||||||| ||||||||||||| | |||||||| ||||||||| | ||| Sbjct: 3243 CAGATATCCAATTACAAAGTACATTAAGATGCTTGTATTAGCAGTCACTTTATATTTATT 3302 Query: 818 TNACTGGGGCAG-CCCCTTNCTAGCA-CTCTATGGGCNGAAACCATCNTAATTNGGGGNA 875 | |||| | ||| |||||| |||||| |||||||||| ||||| ||| ||||| | || | Sbjct: 3303 TTACTGTGTCAGTCCCCTTTCTAGCAACTCTATGGGCAGAAAC-ATCTTAATTCGTGGCA 3361 Query: 876 NGGTGNNNATAA 887 | || |||| Sbjct: 3362 TGTTGTTTATAA 3373 >At4g02300 68417.t00283 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase Length = 3669 Plus Strand HSPs: Score = 242 (42.4 bits), Expect = 0.019, P = 0.018 Identities = 228/413 (55%), Positives = 236/413 (57%), Strand = Plus / Plus