At5g02250 SYNGENTA 11129
Genomic Sequence (from TAIR)
tggcaccttaagacactggaatctatttattttcggaaaaaaactcttctttctctatataactgttaatattcttggtactgattcagttggtactgat tcagttggtgttgcttctatattattataaagaaggaatgcaaaacatgacttgaaatagtgtttgtctctagtatccatgtatacgtatatctctttca aatgatctcttaggaacatttgggaggtaatgtatcaagccttttaaaataaaatctccggggtcaatttgaaaggagcccataacattaagtagggcgt tcatttcattaattgggtttgaatgttaaacataaagcatggggaacatttagtgatttagtaaaaataaggggccaaagatagaatttctcgtttttat cacccgcttcatttgcctttctatcgccacaagaacacagagagagaacgattagcccagttccgatatcgttcggtggcttcttcatctgaagctacgA TGATGTCGGTGAGAGCAATCAATGGTTGCTCCATCATTCGCACCGCCACTTCCGCCGGCGGTCCTCCCGTCTCTCTATTCCGCCACCGTATTCAGCGCCT CAGAGCTTCTCATCTCCGTGAATTCTCGAAATTACGTTTAAATTTTCCACTAATCCGCGCGGATAGGCGGTTTCTCGGAAATAGTGATGCTCCGAGCTGT TCGACTTGCATACATAGTCTGGTCGAAAGTGTTTCCGAAGAGCTCGAATCCATCAGCAGACGCAAGGGAAGCCGAATGAGAGTTCGCGCCAGTGTAAAgt acgtcgcagtatccttctcttactgattattagcaaaattaagtgaatcattgtgtaattaggtgaatttgtagGGTGAAATTAACAAGCTACGGAGAGG TTCTAGAGGATAAGCTAGTAAACCAGGAGCTAGAGGCTGGTTTGCTTCTGGAGTTTAAGAAGGACGCAGACAGAGTGTTGTTGGCAGTTCTTCATAGACG TGATGGCAAGAAGAATTGGATGGTGTTTGATCAGgtttcaatcaaaacttactactcatttacttgctctagcgtcggtggagtgtttgcagattgttag acttatagaaagtttaatgttgcagAATGGTGTTAGTTGTTCCATCAAACCACAGCAAATTACATACATCGTCCCGAATGTTTATAATTTTGATCATACA GGACTTACTGATTTTCTCCAAAGGGCTCAAGATAACTTGgtacgtaatgacattttaaaaggtttacaagtcttttttttctgtgagttgtagtctaaga tgaggttgtcatgttgttacccatgaatgagcttattgttattgtttcgatgcagGATCCCCAACTGCTTGAGTTTGCTTGGATGGAGTTACTTGAGAAG AACAAACCTGTGACCCCAGAAGAGTTAGCAGAGgtactatatatttgagttaatgtaccggttgaacccgtgggttgttaatgcttttaatttgcagATG ATATATGGTCGCGCAGATCCTCTTGAAAGCTATTGTGCTCATTTTTTGCTATCACAAGACGAGATATACTTTTCTATCTTGGAGTCAAAAGGTTCTCGAT CAATATATAGCCCTCGGCCTACTGAACAGgtatttcttgtgcattttttcctgagttatcttttggattaggtcatctatgtcactagaatggttttttt ctgtagcttttttcctttcttggtagtgtaaatcctataatattaggattttttccatctatctagtacagctgagctgcatttgctccataagtttgtg aaatcaagaaagaattctatgttgataaaatttctaacgatacttgctgtgatgtaacttggcttgttaggtgatgatacgtgattaatgctaagagatc tagattgtgaaagtttggactcttctattgctttacatgatttgtcctgaagaccttctttctctgatgatctcacttccgttttttttgtagGTGGAAG AGCTTTTACGAAGGCAACGCGTGAAGGAGGCAGAAGATAAAGAGTTTCAGGAGTTTATTCAATTGCTGAAGTCTGCCAAGAAGGCACCTAGTCACGCCAA GCCCCCTAAATCTTCATGGCTAGCTGATGATAAAGTCCAAGATAGGATTGGCTCACTTGAAGCTTATGCCATTGATGCATGGGCAAGCACTGACCAGCAG AAATTGGCTGGAACGgtaagtcaaccttatatttcttctgtggtaatatctcttcagttttttctatgtgattgcgaagcgacatctctgaaagaatatt ctcttcgaatgtcttgtgatcgttttttcactgtttggttattgaagcaaactgtcaattgtaatcatgtgtatttttgtggttgcttccttacagATAT TAAAATCCATGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTCCTGTACATGTCAATCTTGAACTGCTTAAGCT GAATCTTCCAACCCACCACTCAGAAGCTATCACTGAAGCTGCTGAAGCTCTTCTTTCAGAATCGTCTGATATTGATGCGgtgagcactttaccctgcctt ggatatttgtgttatatgaaaatatttattctcgtgtttgtggcgctttaggaaagtcttgccgcaatctttccctgtggttcaaaattcttactttctc agactttgtttagGTTAGGAGGATTGATCTCACACACTTGAAGGTTTATGCAATTGATGTTGATGAGGCTGATGAGgtaaattcgtacaagtctcctata attattctgcaatgtctagggttcaaaaatcaattcttattgctatctcatctaactgtcagcattcttttcggttttgtggaatttctgcagCTTGATG ATGCCCTCAGTGCAACGAGATTGCAGGATGGACGGATAAAGATCTGGATACATGTTGCTGATCCTGCTAGATATGTTACACCTGGGAGTAAAGTGGACAG gtatgttcgacgcatgtctctgatcactataagagctaactttttggaccctctaatttattaatatgtgcttcagAGAGGCAAGGAGAAGGGGAACTTC TGTCTTTCTGCCAACGGCTACTTATCCAATGTTTCCAGAGAAACTTGCCATGGAAGGAATGAGCTTAAGACAAGGAGAAAACTGTAATGCTGTCTCTGTG TCTGTTGTCCTGCGTTCTGATGGCTGgtaactcaataatcatagctcttttctggagttctaatctaccaaatgctgagaactaaaaaagtaccttcaac ttcttgtaacagTATTACAGAATATTCAGTAGATAATTCAATCATCAGACCGACCTATATGTTGACGTATGAAAGTGCTTCTGAGCTGCTTCACTTGAAC CTAGAAGAAGAAGCTGAACTGAAATTGCTGTCTGAGGCAGCATTCATTCGCTCTCAGTGGCGCCGTGAACAGgttggcttgagttttgtgttgtctgtta tcaaaatcttatcatagaaacatagttttgctaatggttttatcttgtctaaaattttcaacgtgaaaggttcattagtcttctttgggcattaggttct tgctggatgcttttttcatatgtcttttatttaatttgaaacacctgtttttcctgggcttacgcagGGTGCAGTGGACACAACTACACTAGAAACTCGT ATCAAAGTGGTGAATCCTGAGGATCCAGAACCTTTGATAAATCTCTATGTAGAAAATCAGGCAGATCTAGCGATGAGACTTGTCTTTGAAATGATGATTC TTTGTGGGGAGGTTGTAGCAACGTTTGGGTCTCAGCATAATATTCCATTGCCATATAGAGGACAGCCACAGTCAAATATTGATGTATCTGCATTTGCGCA TCTTCCAGAAGGACCAGTACGTTCCTCATCCATTGTCAAAGTAATGCGTGCTGCAGAAATGAATTTCAGATGTCCTGTTCGACATGGAGTGCTTGGAATT CCTGGTTACGTTCAGTTCACGTCTCCCATTCGTCGATACATGGATCTTACTGCACACTATCAGgtaaacatttttcaccatcttgcgatttagatttgac tctttttgttattgtcttaattgattgatctatttggatatcgatggggtacatacttgtgctttctgccttatccttcatttgaacattcaccatatca ataagttggcaaagcgtgttgtttgaattacagATTAAAGCTTTTCTTCGAGGAGGTGACAATTTTCCATTCTCTGCTGGTGAGTTAGAAGGTATAGCAG CATCCGTAAACATGCAGAGCAAAGTGGTGAGAAAACTCTCAAACACCGGTCTCCGCTATTGGGTAATAGAGTTTCTCAGAAGACAGGAAAAGGGTAAAAA GTACACCGCATTGGTCTTGAGATTTGTCAAAGACCGGATCGCATCCCTTTTGTTGGTTGAGgtaagtgtttaattccacatgaatcttttctcataataa gcggtttagatcatgttcaatcacttgtaaaatgtttccagGTGGGTTTTCAAGCAACGGCGTGGGTGTCAGAAGGAAAACAAGTGGGAGATGAAATCGA AGTTCGAGTAGAAGAAGCTCAT◄CCCCGCGACGATCTTATTCTCTTCAAAGAGGTTATC►TAGag►ctttaaaaacacacagttcaggaaaattcattaa agtcggtttctctaaacatggagatgcctgaaactgatagaaagcttgtgtttacaaaagaggtaactaatttccactaatgttttaactaagcctgata tatatcaatgaattgaatacaatattttgctcttttggtgttaaagaaacttgctgatggacgcagccattggtggcttgagctatgatctgctataaaa gttgaacacatggtaatatggtacgcacttaatagggttcatacaattttacatcatcttgttattctaagtatttatggaaacttgcgtttgttctgta gagcaaaggatgaaaaaggaatgtatatatatactatttcaatgttgaattttattgatctaaagtcttgaacagagctcgaaggccttagaaaaatatc aacttgatataattaagctcttaagattctttgtttcttcaaattctgtggcttggagtttaagttaggtcagatataaatcatatggacttcacattat tgagcccttagctctaggcttaaggtatctatggattatgtaatatcttacctcctgaaatgtaatccttaataattagaggttaagcttgttgtcgatt agtttttggtttcgatttttgtcttttcttatttaaaatggtctttgttattataaataagattgatcgtcgattttttttttttaaaaagacagattaa gtgcccgtaaaccccataacaccacatggctgtccaaatctaaaatcatttgacatttttaccaataacaaattgcgttaaattacttattgataaatca gaa
Border_1 (11129_2nd_border_U)
AAACATTTTTCACCATCTTGCGATTTAGATTTGACTCTTTTTGTTATTGTCTTAATTGATTGATCTATTTGGATATCGATGGGGTACATACTTGTGCTTT
CTGCCTTATCCTTCATTTGAACATTCACCATATCAATAAGTTGGCAAAGCGTGTTGTTTGAATTACAGATTAAAGCTTTTCTTCGAGGAGGTGACAATTT
TCCATTCTCTGCTGGTGAGTTAGAAGGTATAGCAGCATCCGTAAACATGCAGAGCAAAGTGGTGAGAAAACTCTCAAACACCGGTCTCCGCTATTGGGTA
ATAGAGTTTCTCAGAAGACAGGAAAAGGGTAAAAAGTACACCGCATTGGTCTTGAGATTTGTCAAAGACCGGATCGCATCCCTTTTGTTGGTTGAGGTAA
GTGTTTAATTCCACATGAATCTTTTCTCATAATAAGCGGTTTAGATCATGTTCAATCACTTGTAAAATGTTTCCAGGTGGGTTTTCAAGCAACGGCGTGG
GTGTCATAAGGAAAACAAGTGGGAGATGAAATCGAAGTTCGAGTAGAAGAAGCTCAT
| Start of BLAST Alignment: | NT 4123 / Exon 14 of 14 |
| First 15 bp Perfect Match: | NT 4123 / Exon 14 of 14 |
| Reverse Complement |
BLAST Details: Query Sequence: 11129_2nd_border_U Length: (557 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g02250 68418.t00137 ribonuclease II family protein con... 2776 2.4e-121 1 >At5g02250 68418.t00137 ribonuclease II family protein contains Pfam profile PF00773: RNB-like protein Length = 4743 Plus Strand HSPs: Score = 2776 (422.6 bits), Expect = 2.4e-121, P = 2.4e-121 Identities = 556/557 (99%), Positives = 556/557 (99%), Strand = Plus / Plus Query: 1 AAACATTTTTCACCATCTTGCGATTTAGATTTGACTCTTTTTGTTATTGTCTTAATTGAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3684 AAACATTTTTCACCATCTTGCGATTTAGATTTGACTCTTTTTGTTATTGTCTTAATTGAT 3743 Query: 61 TGATCTATTTGGATATCGATGGGGTACATACTTGTGCTTTCTGCCTTATCCTTCATTTGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3744 TGATCTATTTGGATATCGATGGGGTACATACTTGTGCTTTCTGCCTTATCCTTCATTTGA 3803 Query: 121 ACATTCACCATATCAATAAGTTGGCAAAGCGTGTTGTTTGAATTACAGATTAAAGCTTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3804 ACATTCACCATATCAATAAGTTGGCAAAGCGTGTTGTTTGAATTACAGATTAAAGCTTTT 3863 Query: 181 CTTCGAGGAGGTGACAATTTTCCATTCTCTGCTGGTGAGTTAGAAGGTATAGCAGCATCC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3864 CTTCGAGGAGGTGACAATTTTCCATTCTCTGCTGGTGAGTTAGAAGGTATAGCAGCATCC 3923 Query: 241 GTAAACATGCAGAGCAAAGTGGTGAGAAAACTCTCAAACACCGGTCTCCGCTATTGGGTA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3924 GTAAACATGCAGAGCAAAGTGGTGAGAAAACTCTCAAACACCGGTCTCCGCTATTGGGTA 3983 Query: 301 ATAGAGTTTCTCAGAAGACAGGAAAAGGGTAAAAAGTACACCGCATTGGTCTTGAGATTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3984 ATAGAGTTTCTCAGAAGACAGGAAAAGGGTAAAAAGTACACCGCATTGGTCTTGAGATTT 4043 Query: 361 GTCAAAGACCGGATCGCATCCCTTTTGTTGGTTGAGGTAAGTGTTTAATTCCACATGAAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4044 GTCAAAGACCGGATCGCATCCCTTTTGTTGGTTGAGGTAAGTGTTTAATTCCACATGAAT 4103 Query: 421 CTTTTCTCATAATAAGCGGTTTAGATCATGTTCAATCACTTGTAAAATGTTTCCAGGTGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4104 CTTTTCTCATAATAAGCGGTTTAGATCATGTTCAATCACTTGTAAAATGTTTCCAGGTGG 4163 Query: 481 GTTTTCAAGCAACGGCGTGGGTGTCATAAGGAAAACAAGTGGGAGATGAAATCGAAGTTC 540 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 4164 GTTTTCAAGCAACGGCGTGGGTGTCAGAAGGAAAACAAGTGGGAGATGAAATCGAAGTTC 4223 Query: 541 GAGTAGAAGAAGCTCAT 557 ||||||||||||||||| Sbjct: 4224 GAGTAGAAGAAGCTCAT 4240
Border_2 (11129_LBD)
CTCAGCAGGACCTGCAGGCATGCAAGCTTATCGATATCTAGATCTCGAGCTCGAGATCTAGATATCGATCGTGAAGTTTCTCATCTAAGCCCCCATTTGG
ACGTGAATGTAGACACGTCGAAATAAAGATTTCCGAATTAGAATAATTTGTTTATTGCTTTCGCCTATAAATACGACGGATCGTAATTTGTCGTTTTATC
AAAATGTACTTTCATTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTCCTCCATATTGACCATCA
TACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAACTTTAAAAACACACAGTTCAGGAAAATTCATTAAAGTCGGTTTCTC
TAAACATGGAGATGCCTGAAACTGATAGAAAGCTTGTGTTTACAAAAGAGGTAACTAATTTCCACTAATGTTTTAACTAAGCCTGATATATATCAATGAA
TTGAATACAATATTTTGCTCTTTTGGTGTTAAAGAAACTTGCTGATGGACGCAGCCATTGGTGGCTTGAGCTATGATCTGCTATAAAAGTTGAACACATG
GTAATATGGTACGCACTTAATAGGGTTCATACAATTTTACATCATCTTGTTATTCTAAGTATTTATGGAAACTTGCGTTTGTTCTGTAGAGCAAAGGATG
AAAAAGGAATGTATATATATACTATTTCAATGTTGAATTTTATTGATCTAAAGTCTTGAACAGAGCTCGAAGGCCTTAGAAAAATATCAACTTGATATAA
TTAAGCTCTTAAGATTCTTTGTTTCTTCAAATTCTGTGGCTTGGAGTTTAAGTTAGGTCAGATATAAATCATATGGACTTCACATTATTGAGCCCTTAGC
TCTAGGCTTAAGGTATCTATGGATTATGTAATATCTTACCTCCTGAAATGTAATCCTTAATAATTAGAGGTTAAGCTTGTTGTCGATTAGTTTTTGGTTT
| Start of BLAST Alignment: | NT > 2 / 3’ UTR |
| First 15 bp Perfect Match: | NT > 2 / 3’ UTR |
BLAST Details: Query Sequence: 11129_LBD Length: (1362 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g02250 68418.t00137 ribonuclease II family protein con... 2317 1.4e-99 1 At4g16990 68417.t02413 disease resistance protein (TIR-NB... 256 0.0092 1 At5g33290 68418.t03637 exostosin family protein contains ... 199 0.046 2 At2g22330 68415.t02490 cytochrome P450, putative similar ... 233 0.093 1 >At5g02250 68418.t00137 ribonuclease II family protein contains Pfam profile PF00773: RNB-like protein Length = 4743 Plus Strand HSPs: Score = 2317 (353.7 bits), Expect = 1.4e-99, P = 1.4e-99 Identities = 465/467 (99%), Positives = 465/467 (99%), Strand = Plus / Plus Query: 350 TTGAACTTTAAAAACACACAGTTCAGGAAAATTCATTAAAGTCGGTTTCTCTAAACATGG 409 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4277 TAGAGCTTTAAAAACACACAGTTCAGGAAAATTCATTAAAGTCGGTTTCTCTAAACATGG 4336 Query: 410 AGATGCCTGAAACTGATAGAAAGCTTGTGTTTACAAAAGAGGTAACTAATTTCCACTAAT 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4337 AGATGCCTGAAACTGATAGAAAGCTTGTGTTTACAAAAGAGGTAACTAATTTCCACTAAT 4396 Query: 470 GTTTTAACTAAGCCTGATATATATCAATGAATTGAATACAATATTTTGCTCTTTTGGTGT 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4397 GTTTTAACTAAGCCTGATATATATCAATGAATTGAATACAATATTTTGCTCTTTTGGTGT 4456 Query: 530 TAAAGAAACTTGCTGATGGACGCAGCCATTGGTGGCTTGAGCTATGATCTGCTATAAAAG 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4457 TAAAGAAACTTGCTGATGGACGCAGCCATTGGTGGCTTGAGCTATGATCTGCTATAAAAG 4516 Query: 590 TTGAACACATGGTAATATGGTACGCACTTAATAGGGTTCATACAATTTTACATCATCTTG 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4517 TTGAACACATGGTAATATGGTACGCACTTAATAGGGTTCATACAATTTTACATCATCTTG 4576 Query: 650 TTATTCTAAGTATTTATGGAAACTTGCGTTTGTTCTGTAGAGCAAAGGATGAAAAAGGAA 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4577 TTATTCTAAGTATTTATGGAAACTTGCGTTTGTTCTGTAGAGCAAAGGATGAAAAAGGAA 4636 Query: 710 TGTATATATATACTATTTCAATGTTGAATTTTATTGATCTAAAGTCTTGAACAGAGCTCG 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4637 TGTATATATATACTATTTCAATGTTGAATTTTATTGATCTAAAGTCTTGAACAGAGCTCG 4696 Query: 770 AAGGCCTTAGAAAAATATCAACTTGATATAATTAAGCTCTTAAGATT 816 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4697 AAGGCCTTAGAAAAATATCAACTTGATATAATTAAGCTCTTAAGATT 4743 >At4g16990 68417.t02413 disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein. Length = 5320 Plus Strand HSPs: Score = 256 (44.5 bits), Expect = 0.0092, P = 0.0092 Identities = 318/587 (54%), Positives = 318/587 (54%), Strand = Plus / Plus