At2g41720 SYNGENTA 113422
Genomic Sequence (from TAIR)
agtcttttatgttgttagtatttatttactatactttaaaataaataaaagttatttttagaaaatcaagttagtttacaaattgaccataatgggccga aacatatcggatatggggcctaagatccgtagccgcgagagtaatgttatcctcttttatccaccgaagagccttccttactcgtttggctgtgaATGGC TACCGTTACCAATTTCAAGCTCGTCACTCCGCCGGAATCTTCCCGCGCCGATAAGCCAGGAGCTACGAAGGCCTCCGACGCATTCCAGGAGAAGAAATCT GTGTCTGTGAACTACGACCGTGGTGAGCATGAGGTCTCGGTCAACATCGGCGGGCTCAGGAAAGCTGATATTCCGAGACGTTACCGAATTCGGGTTGAGA ACGACCGGTTTCAGAAGGATTGGAGTGTATCGGAGGTTGTGGACCGGCTTATGGCTCTCAATCGTTGGGAAGAAGTTGATGGCGTTCTTAATTCCTGGGT CGGCCGGTTTGCTAGGAAGAATTTCCCGGTTCTTATCAGGgtatgtatgtctcgatttcgattggtattattcactgatgctcttttgaacttattggag ttttgaattttgtaactttgcagGAGCTTAGTAGAAGAGGGTGTATTGAGCTTTGTGTGAATGTTTTCAAGTGGATGAAGATTCAGAAGAACTACTGTGC AAGGAATGATATATACAATATGATGATTAGGCTTCATGCTAGGCATAATTGGGTTGATCAGGCTCGTGGTCTCTTCTTTGAAATGCAGAAATGGAGgtat gtgtgaagtttttatctgaaaatgttctatattgtaagtgcgattatcttggatattaatttattgagaaggtatatggtatggttgtagCTGCAAACCG GATGCTGAGACGTACGATGCTCTTATCAATGCCCATGGTCGAGCTGGTCAATGGCGCTGGGCTATGAATCTTATGGATGACATGTTACGTGCTGCTgtgt gtaactttgctttactcatgtaaagtttacatttttgttttgggtttccatgatgcccaactaacaattaagaataatctatttcacttctgatatggtt ttgacttttgactcttctctggttttgcagATTGCTCCTAGTCGTTCAACCTACAATAACCTGATCAATGCTTGTGGTTCTAGTGGAAACTGGAGAGAGG CTCTGGAAGTATGCAAGAAAATGACAGATAACGGAGTTGGACCGGATTTGGTCACTCATAACATTGTGTTGTCAGCATACAAGAGTGGTCGTCAGTATTC AAAGGCGCTATCTTATTTTGAGCTCATGAAGGGAGCTAAAGTTCGTCCCGATACTACAACTTTCAATATCATTATATATTGTCTGTCAAAGCTCGGTCAA AGTAGCCAAGCCCTTGATCTTTTCAATTCCATGAGGGAGAAGAGAGCTGAGTGCAGACCTGATGTTGTGACATTTACGAGCATCATGCATTTATACTCTG TCAAGGGAGAGATAGAAAACTGCAGAGCCGTGTTCGAAGCAATGGTTGCAGAAGGTCTAAAGCCTAATATTGTTTCCTATAATGCCTTAATGGGTGCCTA TGCTGTTCATGGAATGAGTGGAACTGCTCTCTCAGTGTTAGGAGATATCAAGCAGAATGGTATTATCCCAGATGTGGTCTCTTATACATGCTTGCTCAAT TCTTATGGAAGATCACGTCAACCTGGGAAGGCAAAGGAGGTATTCCTCATGATGAGGAAGGAAAGGAGAAAGCCAAATGTTGTTACTTACAATGCATTGA TTGATGCTTATGGGTCTAATGGGTTTCTAGCTGAAGCTGTGGAAATCTTTCGGCAGATGGAACAAGATGGCATTAAGCCAAATGTTGTTTCAGTATGCAC TCTTTTGGCTGCTTGTAGTAGGTCTAAAAAAAAGGTGAATGTTGATACTGTACTTTCCGCAGCACAGTCGAGAGGCATTAATCTCAATACGGCAGCCTAT AACTCAGCCATTGGAAGCTATATAAATGCTGCAGAACTTGAGAAGGCCATTGCATTGTATCAGAGTATGAGAAAAAAGAAAGTCAAAGCTGATTCTGTTA CTTTCACTATCCTTATAAGCGGTTCATGTAGGATGTCAAAATACCCTGAAGCAATTAGTTACTTGAAGGAGATGGAAGATCTCAGTATTCCATTGACAAA GGAGGTGTACTCTTCGGTTCTATGTGCTTACAGCAAACAGgcaagtgcttagagtttgagctcagaagaagacgtgtgtattcaatagaattctgatttt catatggtttgactgtcactttctttgtgataatttccagGGTCAAGTTACAGAAGCAGAATCCATATTCAACCAGATGAAAATGGCTGGGTGCGAACCT GATGTGATTGCATACACTTCAATGCTCCATGCTTACAATGCTTCAGgtaaataccatgagtgtaagactgttaaaaatggtaacaaaatgttttcagtgg atctgagttggcttggaatggttttgtgttgccagAAAAGTGGGGAAAGGCTTGTGAACTCTTCCTGGAAATGGAGGCAAATGGAATAGAGCCAGATTCG ATTGCTTGTTCAGCTTTGATGAGAGCTTTCAACAAGGGAGGTCAACCGTCAAATGTCTTTGTCCTGATGGATTTAATGCGGGAAAAAGAAATCCCCTTCA ◄CT◄GGTGC►GGTCTTCTTTGAGATATTTTCGGCTTGTAACACgtaagttcttgtatgtctatttaaaacattacagtaaaatacttgctcgaattacag aaagagcaatatatcacccttcttctttcaacattgcagCTTGCAGGAATGGAAAAGAGCAATAGACCTCATCCAAATGATGGATCCGTACCTGCCATCG CTTTCTATCGGGTTAACTAATCAGATGCTGCATCTTTTCGGGAAGAGTGGTAAAGTTGAAGCAATGATGAAGgtacaacgaacttttagttgatcagcta attagacttccacattatctttcttttctgccaacctgtttacaaaagaatgttaacgaaaccatgttgtaccactaaacacacgcagCTGTTCTATAAG ATTATTGCCTCTGGTGTTGGAATCAACCTCAAGACTTATGCAATACTGTTGGAACATCTTTTAGCTGTTGGAAACTGGAGAAAATACATTGAGgtaatac ttttttgtttgtctcttgccaaatgaatttcaattagcaatgaccaagcaagttttgcggttgagaaataaaatttgacttttgtgtgaatgatttgcag GTTTTAGAATGGATGAGTGGTGCTGGTATTCAACCCTCGAACCAAATGTATCGTGACATAATCTCCTTTGGTGAAAGAAGTGCAGGGATCGAGTTCGAGC CTCTAATACGCCAAAAATTGGgtgagatgagagaggaatgcaaaataaatgattctgtcacatgattttcgatctttttggtgtctcacatttcattttt tgttggttattccatagAATCACTGAGAAACAAAGGAGAAGGTCTGATTCCAACTTTTAGACACGAAGGCACATTGTTGTAAtttccactatatgcttgt atttttggcccagtgattatgcatatgatgtttgtaacttgtaatctcctctatcgataatatgataattcaattcagaaaacgaaatcattttagtatt gaaaataaacgtagattgttggctagagttacatattgaattgctataggatccagcttgtatgtgcagataatagataaactgatacaagacattcaat tca
Border_1 (113422_RB)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTRKGWMCATCS
MTWACTRCCAAGCKCGCAAWTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCA
TGCTAGCATATGGNTGGTCATTTGTATTAATGTATTTGTTTACAGTGTTACGTGTTACGTGTTACGTGTTACTTGTAATGTATTGAAGGGGATTTCTTTT
TCCCGCATTAAATCCATCAGGACAAAGACATTTGACGGTTGACCTCCCTTGTTGAAAGCTCTCATCAAAGCCTGAACAAGCAATCGAATCTGGCTCTATT
CCATTTGCCTCCATTTCCAGGAAGAGTTCACAAGCCTTTCCCCACTTTTCTGGCAACACC
| Start of BLAST Alignment: | NT 2507 / Exon 6 of 10 |
| First 15 bp Perfect Match: | NT 2505 / Exon 6 of 10 |
BLAST Details: Query Sequence: 113422_RB Length: (460 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g41720 68415.t04731 pentatricopeptide (PPR) repeat-con... 866 1.8e-33 1 >At2g41720 68415.t04731 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 3533 Minus Strand HSPs: Score = 866 (136.0 bits), Expect = 1.8e-33, P = 1.8e-33 Identities = 176/178 (98%), Positives = 176/178 (98%), Strand = Minus / Plus Query: 459 GTGTTGCCAGAAAAGTGGGGAAAGGCTTGTGAACTCTTCCTGGAAATGGAGGCAAATGGA 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2339 GTGTTGCCAGAAAAGTGGGGAAAGGCTTGTGAACTCTTCCTGGAAATGGAGGCAAATGGA 2398 Query: 399 ATAGAGCCAGATTCGATTGCTTGTTCAGGCTTTGATGAGAGCTTTCAACAAGGGAGGTCA 340 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2399 ATAGAGCCAGATTCGATTGCTTGTTCAG-CTTTGATGAGAGCTTTCAACAAGGGAGGTCA 2457 Query: 339 ACCGTCAAATGTCTTTGTCCTGATGGATTTAATGCGGGAAAAAGAAATCCCCTTCAAT 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2458 ACCGTCAAATGTCTTTGTCCTGATGGATTTAATGCGGGAAAAAGAAATCCCCTTCACT 2515
Border_2 (113422_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAGACAAAGACATTACAGTGTTACGTGTAATACATTAAGTTGTCTAAGCGTCAATTTGTTACAGTAATGCGGGATGGTCTTCTTTGAGATATTTTCG
GCTTGTAACACGTAAGTTCTTGTATGTCTATTTAAAACATTACAGTAAAATACTTGCTCGAATTACAGAAAGAGCAATATATCACCCTTCTTCTTTCAAC
ATTGCAGCTTGCAGGAATGGAAAAGAGCAATAGACCTCATCCAAATGATGGATCCGTACCTGCCATCGCTTTCTATCGGGTTAACTAATCAGATGCTGCA
TCTTTTCGGGAAGAGTGGTAAAGTTGAAGCAATGATGAAGGTACAACGAACTTTTAGTTGATCAGCTAATTAGACTTCCACATTATCTTTCTTTTCTGCC
AACCTGTTTACAAAAGAATGTTAACGAAACCATGTTGTACCACTAAACACACGCAGCTGTTCTATAAGATTATTGCCTCTGGTGTTGGAATCAACCTCAA
GACTTATGCAATACTGTTGGAACATCTTTTAGCTGTTGGAAACTGGAGAAAATACATTGAGGTAATACTTTTTTGTTTGTCTCTTGCCAAATGAATTTCA
ATTAGCAATGACCAAGCA
| Start of BLAST Alignment: | NT 2512 / Exon 6 of 10 |
| First 15 bp Perfect Match: | NT 2512 / Exon 6 of 10 |
BLAST Details: Query Sequence: 113422_LB Length: (818 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g41720 68415.t04731 pentatricopeptide (PPR) repeat-con... 2700 8.6e-118 1 At2g18370 68415.t02028 protease inhibitor/seed storage/li... 219 0.14 1 At1g12860 68414.t01334 basic helix-loop-helix (bHLH) fami... 186 0.9994 1 At5g48310 68418.t05543 expressed protein 184 0.99992 1 >At2g41720 68415.t04731 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 3533 Plus Strand HSPs: Score = 2700 (411.2 bits), Expect = 8.6e-118, P = 8.6e-118 Identities = 540/540 (100%), Positives = 540/540 (100%), Strand = Plus / Plus Query: 279 GGTCTTCTTTGAGATATTTTCGGCTTGTAACACGTAAGTTCTTGTATGTCTATTTAAAAC 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2521 GGTCTTCTTTGAGATATTTTCGGCTTGTAACACGTAAGTTCTTGTATGTCTATTTAAAAC 2580 Query: 339 ATTACAGTAAAATACTTGCTCGAATTACAGAAAGAGCAATATATCACCCTTCTTCTTTCA 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2581 ATTACAGTAAAATACTTGCTCGAATTACAGAAAGAGCAATATATCACCCTTCTTCTTTCA 2640 Query: 399 ACATTGCAGCTTGCAGGAATGGAAAAGAGCAATAGACCTCATCCAAATGATGGATCCGTA 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2641 ACATTGCAGCTTGCAGGAATGGAAAAGAGCAATAGACCTCATCCAAATGATGGATCCGTA 2700 Query: 459 CCTGCCATCGCTTTCTATCGGGTTAACTAATCAGATGCTGCATCTTTTCGGGAAGAGTGG 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2701 CCTGCCATCGCTTTCTATCGGGTTAACTAATCAGATGCTGCATCTTTTCGGGAAGAGTGG 2760 Query: 519 TAAAGTTGAAGCAATGATGAAGGTACAACGAACTTTTAGTTGATCAGCTAATTAGACTTC 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2761 TAAAGTTGAAGCAATGATGAAGGTACAACGAACTTTTAGTTGATCAGCTAATTAGACTTC 2820 Query: 579 CACATTATCTTTCTTTTCTGCCAACCTGTTTACAAAAGAATGTTAACGAAACCATGTTGT 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2821 CACATTATCTTTCTTTTCTGCCAACCTGTTTACAAAAGAATGTTAACGAAACCATGTTGT 2880 Query: 639 ACCACTAAACACACGCAGCTGTTCTATAAGATTATTGCCTCTGGTGTTGGAATCAACCTC 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2881 ACCACTAAACACACGCAGCTGTTCTATAAGATTATTGCCTCTGGTGTTGGAATCAACCTC 2940 Query: 699 AAGACTTATGCAATACTGTTGGAACATCTTTTAGCTGTTGGAAACTGGAGAAAATACATT 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2941 AAGACTTATGCAATACTGTTGGAACATCTTTTAGCTGTTGGAAACTGGAGAAAATACATT 3000 Query: 759 GAGGTAATACTTTTTTGTTTGTCTCTTGCCAAATGAATTTCAATTAGCAATGACCAAGCA 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3001 GAGGTAATACTTTTTTGTTTGTCTCTTGCCAAATGAATTTCAATTAGCAATGACCAAGCA 3060 >At2g18370 68415.t02028 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid-transfer protein [Nicotiana glauca] GI:6782436; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 Length = 1116 Plus Strand HSPs: Score = 219 (38.9 bits), Expect = 0.15, P = 0.14 Identities = 187/306 (61%), Positives = 187/306 (61%), Strand = Plus / Plus