At1g19080 SYNGENTA 113591
Genomic Sequence (from TAIR)
tttttaaagggacttattgagaagagttttaacgaaataacaaatgttttccatatagcatggctgcatggataaactcataaaagtgttgagagcatag ataaaagaaaactataacagtgtattaggcaatgttttaatgggccttgtactgtgaataaaatgggcccagttaaaaaaagaagagtcccacgtgtacc ctctcttttcttcttcatctacacataggttttgcagagtagcatcgagagagaaaattttctgcaaatttggaatcttaaagttaagaaaatttatttt cttcgaaaggtgaatctattcctctgtcgtatcgtctaaaagctggtaatttgtgtttcttctcttcaaattttctatatttcttcagattctcacacca tttttgttcttaatagaatttgattggggtaatttggtcaaaggATGGATAGGATCAATGGTCTATCAGATGAGATAATCTGCCACATTCTATCTTTCCT TCCGACAAAAGAGTCTGCTTTAACATCTGTCCTGTCAAAACGATGGCGTAATCTGTTTGCCTTGACACCGAATCTTCATTTAGTTGATGATGATCTAGAA GTGGGTGGTTGTGGACAAACCCTCATCGATTTTGTGGATAGAGTATTGGCTGTGTCAAGCAATTTGCCCATTAGGGAGTTTTCAATAAAATGTTGAacac aatttgaattttcatagggtaaggaaggaggtaagggcagagaggagggaaagtatgggtctttagaggttgacgataaaaaaaaattcaaattgtgttt gattacataaatttacttactgaatgagtagatttaacagccatttgtgttaactacaagagagaggttttatgcatttggacttcactgttactgttct aaactctctagatgttgaattgtttttgtaaatctgaaatctcagatttgagtctgacaatgtcaatgtcaatctattaagaggttgatttttgagtgtc ttttggtttgtttttaactccccgcagaccgcgaatttaatctcaaggttaaggtggtgtggaatcagccttaggggATGGCGAAGTACTTTGACATTGA TGACATACTTATAGAGGAAGAGgtcacctttattctccaatagctttgctttagactctctttatcaactaagaaatctgatctctattgttaccttgtt gcagTTTGTACCGGTTTTATTCCATAAAACAGCAAACGGAGTGACTATTGATCCAAGTGCAGAAACAAATTGTGTCAGTCTTCTCATTCCTAGTGCAAAA gtttgtaatggatatatcatattttcctttctgatatgatttttgtgagattttctggtgcagGCTGAACAAGGCTCTAAAGTTGAACTTCCCTTCTGGC TTGCTCATGAGTTGCATCTGAGGCAAGCTGTTACCATAAACCTTCCTCCCTGTTTTGACCAAAAgtaagcattctgtagcttaactgtagtgttggcatt gtgtattttcaaggatggagtaatgtcgaaaatctagattgtcaatttgattctctttctttctttctttctttttcttctgcatccatggtcagatgtc ctttaagcagttgcttcttttgccctgtaacagtctttttatggctttgtttgttttgtgcagGACGAGGCTTGAAGTTCAGGCTGATGCTGCATACGTC GATCTTAGATCGCGATGTCCATACTTTTATGAATTTGGATGCAAGATAGAGCCACTgtgagttcctccttttaagactctgtccactcacttccctttca ttttgatgttgtcttatctcttggcttcaagaacaaaagtgtctaatttttgaggcagatgaaaactcgattattacagtgtctggattaaagtaaagct attttctgtggtggtaatcatactgatttttggtctaaacagGGTCACAGATAGAACACTGGGGATCTTGCTATCGACTGCGTTTAAGATCAGATACAAA GAGGCACTGACAAAAGTATACACAGCAGCTCACATAACAGCTTCCAAGTACTTGTCGTTTTTAACAAAAGAAGAAACAAACTgtaagcctttatgttttg aactctaatggtagtgaatttagtgtttaaccatctcaagcttgtaccaaaatgaacaatctgtttttgtttctgtgttctttttgaagTGTATGAAGCA GCTCACTTGTCGATGACAGCCTTCAAGAAGTGGAGAACA►GGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGATTCTAATTAA gttccctaaaactctttatcctcatccttaccaagagggtgattgtgttatattagttataacatgtcaaaatgatgcaatggcaacatattatggtctg aatcaaattgcaaatccttttgtgttatgttctcttcagtaaactcaaaatcatatccagatggtgttatcagttatgccatatgatccagttacgttca aaattgatcattcgttctctataattttattcaattcttcaaaaatattgaattatagattaaccaaaattttccacttcaatttatggaatcattctct tctgcttcgtttaaaattataatatttcttttccccggaacagattcagattaagaacaccaaatccaacacaacaaataaaagaaagtatatagtagaa g
Border_1 (113591_RBU)
GGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGATTCTAATTAAGTTCCCTAAAACTCTTTATCCTCATCCTTACCAAGAGGGT
GATTGAGTTATATTAGGTATAACATGTCAAAATGATGCAATGGCAACATATTATGGTCTGAATCAAATTGCAAAACCTTTTGTGTTATGTTCTCTTCAGT
AAACTCAAAATCATATCCAGATGGTGTTATCAGTTATGCCATATGATCCAGTTACGTTCAAAATTGATCATTCGTTCTCTATAATTTTATTCAATTCTTC
AAAAATATTGAATTATAGATTAACCAAAATTTTCCACTTCAATTTATGGAATCATTCTCTTCTGCTTCGTTTAAAATTATAATATTTCTTTTCCCCGGAA
CAGATTCAGATTAAGAACACCAAATCCAACACAACAAATAAAAGAAAGTATATAGTAGAAGGGCTCATATCAAGTGTAACTTGGAAGGACCGTCATCGAG
GGAAATGGGATGAAAGAAAGAACCCTAAATCAAAAAGGGGAAAAAAACATTTATCAAATGTTATTTCTCCTTCG
| Start of BLAST Alignment: | NT 1795 / Exon 8 of 8 (Intron 1 in 5’UTR) |
| First 15 bp Perfect Match: | NT 1795 / Exon 8 of 8 (Intron 1 in 5’UTR) |
BLAST Details: Query Sequence: 113591_RBU Length: (574 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g19080 68414.t02119 expressed protein 908 1.1e-35 1 At1g65960 68414.t06861 glutamate decarboxylase 2 (GAD 2) ... 236 0.014 1 At1g05577 68414.t00517 hypothetical protein 227 0.031 1 At1g31690 68414.t03493 copper amine oxidase, putative sim... 224 0.047 1 >At1g19080 68414.t02119 expressed protein Length = 2170 Plus Strand HSPs: Score = 908 (142.3 bits), Expect = 1.1e-35, P = 1.1e-35 Identities = 184/187 (98%), Positives = 184/187 (98%), Strand = Plus / Plus Query: 1 GGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGATTCTAATTAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 GGTGGTCCTAGATTCCAGAGAGCTTCAATACTCGGAAGAAAACGCAAGGATTCTAATTAA 2043 Query: 61 GTTCCCTAAAACTCTTTATCCTCATCCTTACCAAGAGGGTGATTGAGTTATATTAGGTAT 120 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct: 2044 GTTCCCTAAAACTCTTTATCCTCATCCTTACCAAGAGGGTGATTGTGTTATATTAGTTAT 2103 Query: 121 AACATGTCAAAATGATGCAATGGCAACATATTATGGTCTGAATCAAATTGCAAAACCTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2104 AACATGTCAAAATGATGCAATGGCAACATATTATGGTCTGAATCAAATTGCAAATCCTTT 2163 Query: 181 TGTGTTA 187 ||||||| Sbjct: 2164 TGTGTTA 2170 >At1g65960 68414.t06861 glutamate decarboxylase 2 (GAD 2) similar to glutamate decarboxylase (gad) GI:294111 from [Petunia hybrida] Length = 5547 Plus Strand HSPs: Score = 236 (41.5 bits), Expect = 0.014, P = 0.014 Identities = 142/229 (62%), Positives = 142/229 (62%), Strand = Plus / Plus