At5g26742 SYNGENTA 11376
Genomic Sequence (from TAIR)
tcgatagatttctaaataacaatgattaacgagatttagttcaataattatcaacaaggtggaagaaaaatagtgtttaaggagggtgagaatgagattg agactagtacatccaaaatatgaaaataaatatctctataactatatccatacctccaatgatccaaacatggccagaagcccagaatcagaataataaa agccatacaatggacctaaataaacatagcccaataacggcccactaaaatctgatattttacatcaacttgagtggtagaaataaataaagatagggca gaagcagagaagcaaaatcgtggaaggttacaaagcctttcaaaaacctcactctctcaactctcaaaccttatctccttccttctcttctcctctcctc tccgtcgagcttactatctccacaaaATGGCGTCGACGGTAGGAGTTCCATCACTATACCAAGTTCCTCACCTTGAAATCTCCAAACCCAATTCCAAAAA GAGGTCTAATTGTTTATCTTTATCTCTCGATAAGCCTTTCTTCACTCCCTTATCTCTTGTTCGTAGAACTCGTCGTATCCATTCCTCTTCTCTTCTTGTT CCTTCTGCTGTTGCTACTCCTAATTCTGTTCTCAGTGAAGAAGCTTTCAAAAGTCTTGGTCTTTCTGACCATGACGAATATGACCTTGACGGCGACAACA ACAACGTTGAAGCTGATGATGGTGAAGAACTCGCTATCTCTAAACTTAGTTTGCCTCAACGTCTTGAAGAGTCTCTTGAGAAACGTGGTATCACTCATCT CTTCCCCATTCAGgtttgtctcttttgtatgttttatttctgttttcaaaattcttaaaaatggttcctttatggataagttcgcttagggttccgtttt atctcatttccaattgaaaaaatggttcctttgtggataagttagcttagggttcctttatatctcatttccaattgtaaaaatggttcctttatgaata atctgtgttttgattaagaagcacaatcttagatatgtttgagtctctattgacatgatgttgtttggtatatgtgtatgaagAGAGCTGTGTTGGTACC TGCACTGCAAGGAAGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTGGCT►TTTGGTATTCCTATC◄ATTAA◄ACGTCTCACTGAAGAA GCTGGAGACTACACTG►CTTTCAGgtctttgtttatttttactttggtataccatttgtttagatgtgaccttttttccattggattttgctaaaggttt agtcttttgttgtgagcagGAGGTCTGGTCGTCTTCCTAAGTTCCTTGTCCTTGCGCCGACCCGAGAGCTGGCTAAGCAAGTGGAGAAGGAGATTAAGGA GTCTGCACCTTATTTGAGCACTGTTTGTGTGTATGGGGGAGTTTCTTATACCATTCAGCAGAGTGCTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACT CCTGGAAGAATCATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTTGAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCTGTTGGGT TTGAGGAGGCCGTGGAATCGATTCTTGAGAATCTTCCAACTAAGCGACAAAGTATGCTTTTCTCAGCAACTATGCCTACTTGGGTTAAGAAGTTGGCGAG GAAGTACCTTGACAATCCCTTGAATATTGATCTGgtaaacgctttcctatgcttgcctttgttccttatcaattttcagcttgactcagatgcttaatgc tatcttctcgtttgttttatttgattggcagGTTGGAGACCAAGATGAGAAGCTCGCAGAGGGTATCAAACTTTATGCAATCGCAACCACATCGACATCA AAACGCACTATTCTAAGCGACCTTATTACAgtatgtctgagctgataatttgctgttttcttaacatgattgatgattgattggtgctttggctctcagt tgattatttttattttcttaatttgaagGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACCCAAACTAAAAGAGATGCAGACGAAGTTTCTCTTGCA TTGTCAAACAGTATAGCTACCGAAGCACTTCATGGAGATATATCTCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGTCAAGGGAAATTCACCGTAT TAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCGAACGTAGATCTAgtaagttctcaaagtttcggtacatagtttatcatctcttatggcat gtttgtctgtttgttctgacattttcttctacagGTTATCCACTATGAACTTCCTAATGACCCAGAAACTTTTGTGCACCGTTCTGGTCGTACTGGGCGT GCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAAGAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTA GCCCACCAACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGGTGTTCACCCTGACTCCATAAAGTTTTTCTCAGCAAC TGCTCAAAAACTATATGAGGAGAAAGGAACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGTGGTTTCTCTCAGCCGCCTTCATCAAGATCTCTCCTC AGCCATGAGAAGgtataattctcaaccatgctttaaaaattcaaaaaaacaaatacgagatcattgaactttctagaatgcttcttgatactcttacaaa ctgcaacataatctatatagcaaatcttttttttcatagaaatgtgttattcatgagctgaagttaaatttttggactgcagGGATGGGTGACTTTGCAA TTGATCCGAGATCCAACGAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATCTTTACCGTACAGCTGCAGATGAAGTTGGAA AAATCTTCTTGATCGCCGATGACAGGgtaaatatctttgaaatggttgttacttttgcagtagcgtcaaaactatcttctttggaaatttatgattctgt tatctcagATCCAAGGAGCTGTATTTGATCTACCAGAGGAGATCGCGAAAGAGCTCCTAGAGAAAGATGTCCCCGAAGGCAACAGTTTATCCATGATAAC AAAGgtattgattctggcttctcttagtttttactggctttcactctttatccaacataacatgtttttcataattagacctttttgactaacacttcac atcttgggttttgattgtagTTACCTCCACTTCAAGATGACGGACCATCTAGTGATAACTACGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGG AGGAGGTTCTAGAGGGTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGACAGAGGTAGTAGAAGGAGCAGTGGT GGAGGAAGCAGCTGGTCCCGAGGTGGTAGTAGTTCCAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCCTTCGC GGGAGAGgtgagtatttaaaaaaatctgtgttaaagctttcacaacatccccatcctactgattgattgatgcctttaaacagaagTTTTGGAGGTTCAT GCTTCATTTGTGGGAAATCTGGACACAGGGCAACAGATTGTCCTGATAAGAGAGGATTTTAGagttatcgtagcaaatggtttctgctcttgggagaaag atccttgtcctttttggtgttcttaatgcgaatcttttcgtgcttgcttcaacggtttgtttcagacggtagagaagcaatcagggaggaggatacatgc ttcggacaaggtagagcagaaataaataagagagaggcaatagcaaaagtaaaggagaaggttttcctcaaattggcattttcagagtttgcgtgagaaa caagggaaagctgatggatctttttatgttagggttattataatagtcttaatgatcagtttccatgtttctaaggttttgtttgatttaagtggttatt agtcagtctacttacactacttttattttcatttttgtacgttttctattgttatatgtgaattcggatcacatgtgtttggacagaagtaactatgtca ttat
Border_1 (11376_RBD)
TGATTACGCCAAGCTCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGATAGGAA
TACCAAAAGCCAAAGTCTTTCCAGTTCCTGTCTTTGCWMSAGCWATAATATCTCTTCCTTGCASWGCAGSTACCAACACAGCTCTCTTCATACACATATA
CCAAACAACATCATGTCAATAGAGACTCAAACATATCTAAGATTGTGCTTCTTAATCAAAACACAGATTATTCATAAAGGAACCATTTTTACAATTGGAA
ATGAGATATAAAGGAACCCTAAGCTAACTTATCCACAAAGGAACCATTTTTTCAATTGGAAATGAGATAAAACGGAACCCTAAGCGAACTTATCCATAAA
GGAACCATTTTTAAGAATTTTGAAAACAGAAATAAAACATACAAAAGAGACNAACCTGAATGGGGAAGAGATGAGTGATACCACGTTTCTCAAGAGACTC
TTCAAGACGTTGAGGCAAACTAAGTTTAGAGATAGCGAGNTCTTCACCATCATCAGCTTCAACGTTGNTGGTGGCGCCGCNANGGCATATTCGNCATGGG
CAGAAAGANCAANACTTTTGAAAGCTTNTTCACTGANAACAGAATTAGGAGTAGCACCNGCNGAAGGACCAGAANAGAAGAGGAATGGGTNCCACNAGTT
CTCCAACAANAAAAAAGGGANNGAAAAAAGGGTTATNNAAAAGAAAAAGAAAACCATTTANACCTCTTTTTGGAATNGGGTTGGAGAATNA
| Start of BLAST Alignment: | NT 755 / Exon 2 of 10 |
| First 15 bp Perfect Match: | NT 750 / Exon 2 of 10 |
BLAST Details: Query Sequence: 11376_RBD Length: (791 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g26742 68418.t02873 DEAD box RNA helicase (RH3) nearly... 2877 9.3e-126 1 At3g22310 68416.t02527 DEAD box RNA helicase, putative (R... 311 5.5e-06 1 At5g51280 68418.t05906 DEAD-box protein abstrakt, putative 221 0.12 1 At5g54910 68418.t06350 DEAD/DEAH box helicase, putative 215 0.22 1 >At5g26742 68418.t02873 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 3332 Minus Strand HSPs: Score = 2877 (437.7 bits), Expect = 9.3e-126, P = 9.3e-126 Identities = 620/706 (87%), Positives = 627/706 (88%), Strand = Minus / Plus Query: 789 ATTCTCCAA-CCCNATTCCAAAAAGAGGTNTAAATGNNNNNNNNNNNNNNNNNNNNNNNN 731 | ||||||| ||| ||||||||||||||| ||| || Sbjct: 51 AATCTCCAAACCCAATTCCAAAAAGAGGTCTAATTGTTTATCTTTATCTCTCGATAAGCC 110 Query: 730 NNNNNNNNNNNNNNNNNNNNNTTGTTGG-AGAACTNGTGGNACCCATTCCTCTTCTNTTC 672 ||||| | |||||| || | | ||||||||||||| ||| Sbjct: 111 TTTCTTCACTCCCTTATCTC-TTGTTCGTAGAACTCGTCGTATCCATTCCTCTTCTCTTC 169 Query: 671 TGGT-CCTTCNGCNGGTGCTACTCCTAATTCTGTTNTCAGTGAANAAGCTTTCAAAAGTN 613 | || ||||| || | ||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 170 TTGTTCCTTCTGCTGTTGCTACTCCTAATTCTGTTCTCAGTGAAGAAGCTTTCAAAAGTC 229 Query: 612 TTGNTCTTTCTGCCCATGNCGAATATGCCNTNG-CGGCGCCACCANCAACGTTGAAGCTG 554 ||| |||||||| ||||| |||||||| | | | ||||| || || |||||||||||||| Sbjct: 230 TTGGTCTTTCTGACCATGACGAATATGACCTTGACGGCGACAACAACAACGTTGAAGCTG 289 Query: 553 ATGATGGTGAAGANCTCGCTATCTCTAAACTTAGTTTGCCTCAACGTCTTGAAGAGTCTC 494 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 ATGATGGTGAAGAACTCGCTATCTCTAAACTTAGTTTGCCTCAACGTCTTGAAGAGTCTC 349 Query: 493 TTGAGAAACGTGGTATCACTCATCTCTTCCCCATTCAGGTTNGTCTCTTTTGTATGTTTT 434 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 350 TTGAGAAACGTGGTATCACTCATCTCTTCCCCATTCAGGTTTGTCTCTTTTGTATGTTTT 409 Query: 433 ATTTCTGTTTTCAAAATTCTTAAAAATGGTTCCTTTATGGATAAGTTCGCTTAGGGTTCC 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 ATTTCTGTTTTCAAAATTCTTAAAAATGGTTCCTTTATGGATAAGTTCGCTTAGGGTTCC 469 Query: 373 GTTTTATCTCATTTCCAATTGAAAAAATGGTTCCTTTGTGGATAAGTTAGCTTAGGGTTC 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 GTTTTATCTCATTTCCAATTGAAAAAATGGTTCCTTTGTGGATAAGTTAGCTTAGGGTTC 529 Query: 313 CTTTATATCTCATTTCCAATTGTAAAAATGGTTCCTTTATGAATAATCTGTGTTTTGATT 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 CTTTATATCTCATTTCCAATTGTAAAAATGGTTCCTTTATGAATAATCTGTGTTTTGATT 589 Query: 253 AAGAAGCACAATCTTAGATATGTTTGAGTCTCTATTGACATGATGTTGTTTGGTATATGT 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 AAGAAGCACAATCTTAGATATGTTTGAGTCTCTATTGACATGATGTTGTTTGGTATATGT 649 Query: 193 GTATGAAGAGAGCTGTGTTGGTASCTGCWSTGCAAGGAAGAGATATTATWGCTSKWGCAA 134 |||||||||||||||||||||||+||||++|||||||||||||||||||+|||+++|||| Sbjct: 650 GTATGAAGAGAGCTGTGTTGGTACCTGCACTGCAAGGAAGAGATATTATAGCTCGTGCAA 709 Query: 133 AGACAGGAACTGGAAAGACTTTGGCTTTTGGTATTCCTATC-TGAA 89 ||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 710 AGACAGGAACTGGAAAGACTTTGGCTTTTGGTATTCCTATCATTAA 755 >At3g22310 68416.t02527 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 2734 Minus Strand HSPs: Score = 311 (52.7 bits), Expect = 5.5e-06, P = 5.5e-06 Identities = 118/173 (68%), Positives = 123/173 (71%), Strand = Minus / Plus
Border_2 (11376_LBU)
ACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGGCTTTCAGGTCTTTGTTTATTTTTACTTTGGTATACCA
TTTGTTTAGATGTGACCTTTTTTCCATTGGATTTTGCTAAAGGTTTAGTCTTTTGTTGTGAGCAGGAGGTCTGGGYCGTCTTCCTAAGTTCCTTGKCCTT
GCGCCGACCCCGAGAGCTGGCTAAGCAAGNTGGAGAAGGAGATTAAAGGAGTCTGCACCTTATTTGAGCACTGTTTGKGKGTATGGGGGRRKTTCTTATA
CCATTCAGCASAGTKYTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGAAGAATCATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGA
AGTTGAGTATTTGGNACTTGATGAAGCTGATCAAATGCTTGCTGGTGGGTTTGAGGAGGCCGNGGAATCGATTCTTTGAGAATCTTCCAACTAAGCGACA
AAGTATGCTTTTCTCAACAACTATGCCTACTTGGGGTAAAAAGNTGGCGAAGGAAAGACCTTGACAATCCCTTGAATATTGATCTGGAAACGCTTTCCCT
ATGCTTGNCCTT
| Start of BLAST Alignment: | NT 735 / Exon 2 of 10 |
| First 15 bp Perfect Match: | NT 787 / Exon 2 of 10 |
BLAST Details: Query Sequence: 11376_LBU Length: (612 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g26742 68418.t02873 DEAD box RNA helicase (RH3) nearly... 2500 9.9e-109 1 At3g22310 68416.t02527 DEAD box RNA helicase, putative (R... 775 2.1e-29 1 At3g22330 68416.t02529 DEAD box RNA helicase, putative si... 704 3.6e-26 1 At2g47330 68415.t05390 DEAD/DEAH box helicase, putative s... 382 1.7e-11 1 >At5g26742 68418.t02873 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 3332 Plus Strand HSPs: Score = 2500 (381.2 bits), Expect = 9.9e-109, P = 9.9e-109 Identities = 548/604 (90%), Positives = 558/604 (92%), Strand = Plus / Plus Query: 11 TGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATA-TATCCTGGCTTTCA 69 | || |||| | ||| |||| || | | | | | || ||| |||||| Sbjct: 736 TTTGGTATTCCTATCATTAAACGTCTCACTGAAGA-AGCTGGAGACTACACTG-CTTTCA 793 Query: 70 GGTCTTTGTTTATTTTTACTTTGGTATACCATTTGTTTAGATGTGACCTTTTTTCCATTG 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 794 GGTCTTTGTTTATTTTTACTTTGGTATACCATTTGTTTAGATGTGACCTTTTTTCCATTG 853 Query: 130 GATTTTGCTAAAGGTTTAGTCTTTTGTTGTGAGCAGGAGGTCTGGGYCGTCTTCCTAAGT 189 ||||||||||||||||||||||||||||||||||||||||||||| +||||||||||||| Sbjct: 854 GATTTTGCTAAAGGTTTAGTCTTTTGTTGTGAGCAGGAGGTCTGG-TCGTCTTCCTAAGT 912 Query: 190 TCCTTGKCCTTGCGCCGACCCCGAGAGCTGGCTAAGCAAGNTGGAGAAGGAGATTAAAGG 249 ||||||+|||||||||||||| |||||||||||||||||| |||||||||||||||| || Sbjct: 913 TCCTTGTCCTTGCGCCGACCC-GAGAGCTGGCTAAGCAAG-TGGAGAAGGAGATTAA-GG 969 Query: 250 AGTCTGCACCTTATTTGAGCACTGTTTGKGKGTATGGGGGRRKTTCTTATACCATTCAGC 309 ||||||||||||||||||||||||||||+|+|||||||||+++||||||||||||||||| Sbjct: 970 AGTCTGCACCTTATTTGAGCACTGTTTGTGTGTATGGGGGAGTTTCTTATACCATTCAGC 1029 Query: 310 ASAGTKYTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGAAGAATCATTGATT 369 |+|||++||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1030 AGAGTGCTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGAAGAATCATTGATT 1089 Query: 370 TGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTTGAGTATTTGGNACTTGATGAAGCTG 429 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1090 TGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTTGAGTATTTGGTACTTGATGAAGCTG 1149 Query: 430 ATCAAATGCTTGCTGGTGGGTTTGAGGAGGCCGNGGAATCGATTCTTTGAGAATCTTCCA 489 |||| |||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| Sbjct: 1150 ATCAGATGCTTGCTGTTGGGTTTGAGGAGGCCGTGGAATCGATTCTT-GAGAATCTTCCA 1208 Query: 490 ACTAAGCGACAAAGTATGCTTTTCTCAACAACTATGCCTACTTGGGGTAAAAAGNTGGCG 549 ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||| Sbjct: 1209 ACTAAGCGACAAAGTATGCTTTTCTCAGCAACTATGCCTACTTGGGTTAAGAAGTTGGCG 1268 Query: 550 AAGGAAAGACCTTGACAATCCCTTGAATATTGATCTGG-AAACGCTTTCCCTATGCTTGN 608 | |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 1269 A-GGAAGTACCTTGACAATCCCTTGAATATTGATCTGGTAAACGCTTTCC-TATGCTTG- 1325 Query: 609 CCTT 612 |||| Sbjct: 1326 CCTT 1329 >At3g22310 68416.t02527 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 2734 Plus Strand HSPs: Score = 775 (122.3 bits), Expect = 2.1e-29, P = 2.1e-29 Identities = 341/541 (63%), Positives = 347/541 (64%), Strand = Plus / Plus