At5g53860 SYNGENTA 116042
Genomic Sequence (from TAIR)
aaagtttcgtaaagtttgcatttttaagtacagcatgtttcttgctttagagttagaacaaacataaaaaaaaaaaaaaactttcatagcaaatttcaat attttttttctataccacggcgcttcctccgccgtatcttcgccgtcatcgccgcaaatatagaaaagacgctcgatttggggatttctcaaattaaact ccttgtcgtttttcttacaaagaaacgacacgtagtctaattagaaggtacatgtttggtaacaaagaataagtctaatccaaaaccgagataagaatag tgtaaaaaccactcttgaaacctcctcttcaaaaataccagagagcgagaaaagctcttatcttcttcatcttctccaATGTCGAGAGGACCAGGTCGTT TAATACAGAACGTGACACAGTTCGCTGATGCTCAATTCAAACAATTCTCTACTCGTTATGGACAACAAGTTATAGACATTCTCGATTTTCCAATCAAGCT CGTCTTGTCTCCTTTCACTCTCGCCTTTGATATCGCTGGCTCTGCACCTCGTGGTTTTGGCATCCCTGAGTTCATCTCCAAAATTTCGTATCTCTCTGTT TTTgtgagttggtttctcctgaaacttatatggttctgggtttagaacttgacatgtagttgtcttaaaggttgaaacttttgttggtttttgctgagtt tctagcttgaaactatcattttctttctgggtttttggtagctgatgtttccggggaaattacgcttcgaatgtttgctaaagttttgagctttaatttg agtgtgcctatattgtgctgaatttctgtctgagtttgtcaacttgatttctaagtcgaagttttgtaagatcaaaatcagtttaggaaactggaaaatg catgttttacttgttctatatggaatctttttatcattggagttccattgattgcagGCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGG GAAAGAAAGTCATATGCCAAAGgtcagcttcaagatttgatgctttattctgggtcagagaatttttgagaaacctcagttctcacacttcctcgctatg tttttggttctactgtttgagttcatccgatgagatgaaaacattttttgttggtcagGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCAC TATGTGCAAAGGAACAGGGAGTGTTCATTACCAAATCAAAGATTACAACTTGAGAAGgtgggattatctcttgtttaacccaagttatatcgcttaaact actaggcttcatgaatagatccactttattctgacggtctctttgtgttctctgtatattaatgtcgacagttccatttggcaatgcttaagctatccta gtgatattctaacagataaaaggatttaaagatttatcctttctgtctttacttgtagTGGAGAGAAACCAACAGCAGATTGTGTCGCAGATGCTATAGT TGAGAATCGAGCTGAGTTAGTTCATCTTCCCTCCTCCTTCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGgtaagcttt ttaatctcgctcttaatgctctaggcttctgtaaatgtatttgcactgctatatttgatactgatttggtttatatctccaaattgtcaactatgctaat ttcatatccacgtaaaaaggtgcttgtttgtgttaagagtgatcgcgataggctgtttttcatcagtgtatgcttagaaatttgatggaacatctattga tattgaagggtgcgatgagctgtactgagtgcaagaacaagctgcaagtcagaatctcagctgatgatgtatgttttgagtctgctattacgtcttctca gcttaacatctacataaatcccctgtgggatgtatatatactagttattagaaatgaaatgcacatggagaggtagtttggttttgaacaaaactatcac ttgctaaatacctttactgacgattcattttgcagATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAAGAAGATGGATTATCCGTACGAGgtgag caccacaaagtctatttatcaacccaacagcttgctatgtttactacatctttaccgtcttatgagtcatattttctatttcagCACATTGTTCACAGCA TGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCA ATATGAGgttagtatctctttctacatatgtagatctccttcagcatgagttatttgccaggcttcacttttgaggttatggtcttctagaggcttaaag catgcataccgtaaaaggtttagtctacaattacctgatagttgaatcttcttaatcctcatttgggatggttttgctacaccaacatagtttcgattcc atatctggataggtttgtgctatggaattggagacatttgtgggatactgatgtactcagggatctgtattgcatagaattttctgttcaataggaacta ttgttgttgaatacttcagctttaagcatcaatgagagtttaactatttatgtcttctgtgatcagGAATCTATGCGATATGATCAACTTCGGGACTTGG TGGCTAAACGCAATCCTGGCTGGGAATATTTGCAGGATgtaagatcgcctatttgtggttttaaagtttaggcaaatctggggaactacattggaatatg ttagctgaagaagtttagcaatcaccatatagttgtcatggttttacagGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCCCGTCATAGTG AAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCACGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTgtaagctttcttc ttctttttggttttagcatcacagttcctgagaccacgggtatagttaagaactaactgctgaacatgtacagGAACTGAATCTCCCATTGAATATTTCC TCTTGGAGTGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCAC AATGGGAAGCTAAATGGCGTCAAGAGAAGgttaat◄caaggaacttttttacacaattcg◄g►ta►ttcatatcacattcacgactccaatgcataccgt ttatctttttgatttgtagGTGGAGGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACCCATCTTGTTA AAGTCACAGAAGAAAGCTCAAAAGgtatcaattgaattggttacaagaataagcctacttgatatcattctctcttacacactaaataaggttccaaatt agatcatacaagaagctctttgcctgaaaatagaacctaagatcacatgttgatttatatgtttattacacagGGAAGCCGGCAAAGGAAGTGGTGGTTC TTCTAAcctgccaagtgtgtcgaaacgaatctatataaaatggattttgaattgagtttttttgtgcttctttgatgaaaatatgctttgatatgaatct tgatgggtgtcaaatatgattacacttcaaaatcagttgtaatgttttaaaagaaatgttgtttttgcagacacttggcagattcgttgtgtaccgccac gtgtatacgatgatctttctttcatgctttgaacttagttttcgtctttctcctatcaatcactctctctataattcctcgtgtctcaccgtcacatttc aacaagttacgtgtgtctttcatgttatggtattacgaaagatctttaccctttttttaattaaatatctatcgacatcattttggatagaacttaaact taat
Border_1 (116042_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGCCATTGACGCTTATTAACCTTAATAACCATATATATTGAATATATATATCCTGTCAATTTGTTTAAGGTCAATGTGTTATTAACCTTCTCTTGACG
CCATTTAGCTTCCCATTGTGCATCCAAGATTTTGTCTGCGATTTCTCTTTGAGCATTGAGAAGAACTGTCTTCTCGTACAGTTTTGCCGGGTTTTTGAGA
TCCTCTTCACTCCAAGAGGAAATATTCAATGGGAGATTCAGTTCCTGTACATGTTCAGCAGTTAGTTCTTAACTATACCCGTGGTCTCAGGAACTGTGAT
GCTAAAACCAAAAAGAAGAAGAAAGCTTACACCCCAATTCTGAGGACGGGGAGGTGGATTGAGTTTCGTGACTTCAGCCTCCAGAGATTTCTTAGCCTTG
TAATAAGGGACATTCTTCACTATGACGGGGTCTTCCCGAGCACGGACAGGATCAATGGAGACCAAGGCCTGTAAAACCATGACAACTATATGGTGATTGC
TAAACTTCTTCAGCTAACATATTCCAATGTAGTTCCCCAGATTTGCCTAAACTTTAAAACCACAAATAGGCGATCTTACATCCTGCAAATATTCCCAGCC
AGGATTGCGTTTAGCCACCAAGTCCCGAAGTTGATCATATCGCATAGATTCCTGATCACAGAAGACATAAATAGTTAAACTCTCATTGATGCTTAAAGCT
GAAGTATTCAACAACAATAGTTCCTAT
| Start of BLAST Alignment: | NT 2881 / Intron 9 of 10 |
| First 15 bp Perfect Match: | NT 2857 / Intron 9 of 10 |
BLAST Details: Query Sequence: 116042_LB2D Length: (927 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g53860 68418.t06217 expressed protein 3230 9.9e-142 1 >At5g53860 68418.t06217 expressed protein Length = 3538 Minus Strand HSPs: Score = 3230 (490.7 bits), Expect = 9.9e-142, P = 9.9e-142 Identities = 658/670 (98%), Positives = 658/670 (98%), Strand = Minus / Plus Query: 927 ATAGGAACTATTGTTGTTGAATACTTCAGCTTTAAGCATCAATGAGAGTTTAACTATTTA 868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2261 ATAGGAACTATTGTTGTTGAATACTTCAGCTTTAAGCATCAATGAGAGTTTAACTATTTA 2320 Query: 867 TGTCTTCTGTGATCAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACG 808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2321 TGTCTTCTGTGATCAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACG 2380 Query: 807 CAATCCTGGCTGGGAATATTTGCAGGATGTAAGATCGCCTATTTGTGGTTTTAAAGTTTA 748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2381 CAATCCTGGCTGGGAATATTTGCAGGATGTAAGATCGCCTATTTGTGGTTTTAAAGTTTA 2440 Query: 747 GGCAAATCTGGGGAACTACATTGGAATATGTTAGCTGAAGAAGTTTAGCAATCACCATAT 688 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2441 GGCAAATCTGGGGAACTACATTGGAATATGTTAGCTGAAGAAGTTTAGCAATCACCATAT 2500 Query: 687 AGTTGTCATGGTTTTACAGGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCC 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2501 AGTTGTCATGGTTTTACAGGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCC 2560 Query: 627 CGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCAC 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2561 CGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCAC 2620 Query: 567 GAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGTAAGCTTTCTTCTTCTTTTTGG 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2621 GAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGTAAGCTTTCTTCTTCTTTTTGG 2680 Query: 507 TTTTAGCATCACAGTTCCTGAGACCACGGGTATAGTTAAGAACTAACTGCTGAACATGTA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2681 TTTTAGCATCACAGTTCCTGAGACCACGGGTATAGTTAAGAACTAACTGCTGAACATGTA 2740 Query: 447 CAGGAACTGAATCTCCCATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCG 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2741 CAGGAACTGAATCTCCCATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCG 2800 Query: 387 GCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATC 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2801 GCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATC 2860 Query: 327 TTGGATGCACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTTAAT-AACACATTGACCTT 269 ||||||||||||||||||||||||||||||||||||||||||||| || | | || Sbjct: 2861 TTGGATGCACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTTAATCAAGGAACTTTT-TT 2919 Query: 268 AAACAAATTG 259 | |||| | | Sbjct: 2920 ACACAATTCG 2929
Border_2 (116042_LB1U)
TGGCTGGCTGGTGGCAGGATATATTGTGGTGTAAACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGAATTAACGCCG
AATTGAATTCGATTTGGTGTATCGAGATTGGTTATGAAATTCAGATGCTAGTGTAATGTATTGGTAATTTGGGAAGATATAATAGGAAGCAAGGCTATTT
ATCCATTWCTTAAAAGCGTCCGCAATGTGTTATTAATTTGTTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGAGG
AAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGGT
ATCAATTGAATTGGTTACAAGAATAAGCCTACTTGATATCATTCTCTCTTACACACTAAATAAGGTTCCAAATTAGATCATACAAGAAGCTCTTTGCCTG
AAAATAGAACCTAAGATCACATGTTGATTTATATGTTTATTACACAGGGAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAAAC
GAATCTATATAAAATGGATTTTGAATTGAGTTTTTTTGTGCTTCTTTGATGAAAATATGCTTTGATATGAATCTTGATGGGTGTCAAATATGATTACACT
TCAAAATCAGTTGTAATGTTTTAAAAGAAATGTTGTTTTTGCAGACACTTGGCAGATTCGTTGTGTACCGCCACGTGTATACGATGATCTTTCTTTCATG
CTTTGAACTTAGTTTTCGTCTTTCTCCTATCAATCACTCTCTCTATAATT
| Start of BLAST Alignment: | NT 2882 / Intron 9 of 10 |
| First 15 bp Perfect Match: | NT 2884 / Intron 9 of 10 |
BLAST Details: Query Sequence: 116042_LB1U Length: (850 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g53860 68418.t06217 expressed protein 3031 9.7e-133 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 213 0.30 1 At5g56620 68418.t06561 no apical meristem (NAM) family pr... 194 0.96 1 >At5g53860 68418.t06217 expressed protein Length = 3538 Plus Strand HSPs: Score = 3031 (460.8 bits), Expect = 9.7e-133, P = 9.7e-133 Identities = 607/608 (99%), Positives = 607/608 (99%), Strand = Plus / Plus Query: 239 TGTTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGA 298 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2931 TATTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGA 2990 Query: 299 GGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCC 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2991 GGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCC 3050 Query: 359 ACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGGTATCAATTGAATTGGTTAC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3051 ACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGGTATCAATTGAATTGGTTAC 3110 Query: 419 AAGAATAAGCCTACTTGATATCATTCTCTCTTACACACTAAATAAGGTTCCAAATTAGAT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3111 AAGAATAAGCCTACTTGATATCATTCTCTCTTACACACTAAATAAGGTTCCAAATTAGAT 3170 Query: 479 CATACAAGAAGCTCTTTGCCTGAAAATAGAACCTAAGATCACATGTTGATTTATATGTTT 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3171 CATACAAGAAGCTCTTTGCCTGAAAATAGAACCTAAGATCACATGTTGATTTATATGTTT 3230 Query: 539 ATTACACAGGGAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3231 ATTACACAGGGAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAA 3290 Query: 599 ACGAATCTATATAAAATGGATTTTGAATTGAGTTTTTTTGTGCTTCTTTGATGAAAATAT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3291 ACGAATCTATATAAAATGGATTTTGAATTGAGTTTTTTTGTGCTTCTTTGATGAAAATAT 3350 Query: 659 GCTTTGATATGAATCTTGATGGGTGTCAAATATGATTACACTTCAAAATCAGTTGTAATG 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3351 GCTTTGATATGAATCTTGATGGGTGTCAAATATGATTACACTTCAAAATCAGTTGTAATG 3410 Query: 719 TTTTAAAAGAAATGTTGTTTTTGCAGACACTTGGCAGATTCGTTGTGTACCGCCACGTGT 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3411 TTTTAAAAGAAATGTTGTTTTTGCAGACACTTGGCAGATTCGTTGTGTACCGCCACGTGT 3470 Query: 779 ATACGATGATCTTTCTTTCATGCTTTGAACTTAGTTTTCGTCTTTCTCCTATCAATCACT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3471 ATACGATGATCTTTCTTTCATGCTTTGAACTTAGTTTTCGTCTTTCTCCTATCAATCACT 3530 Query: 839 CTCTCTAT 846 |||||||| Sbjct: 3531 CTCTCTAT 3538 >At3g61260 68416.t06335 DNA-binding family protein / remorin family protein similar to DNA-binding protein gi|601843 [Arabidopsis thaliana], remorin [Solanum tuberosum] GI:1881585; contains Pfam profiles PF03763: Remorin C-terminal region, PF03766: Remorin N-terminal region Length = 1538 Plus Strand HSPs: Score = 213 (38.0 bits), Expect = 0.36, P = 0.30 Identities = 182/317 (57%), Positives = 183/317 (57%), Strand = Plus / Plus