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At5g53860 SYNGENTA 116042

Genomic Sequence (from TAIR)
aaagtttcgtaaagtttgcatttttaagtacagcatgtttcttgctttagagttagaacaaacataaaaaaaaaaaaaaactttcatagcaaatttcaat
attttttttctataccacggcgcttcctccgccgtatcttcgccgtcatcgccgcaaatatagaaaagacgctcgatttggggatttctcaaattaaact
ccttgtcgtttttcttacaaagaaacgacacgtagtctaattagaaggtacatgtttggtaacaaagaataagtctaatccaaaaccgagataagaatag
tgtaaaaaccactcttgaaacctcctcttcaaaaataccagagagcgagaaaagctcttatcttcttcatcttctccaATGTCGAGAGGACCAGGTCGTT
TAATACAGAACGTGACACAGTTCGCTGATGCTCAATTCAAACAATTCTCTACTCGTTATGGACAACAAGTTATAGACATTCTCGATTTTCCAATCAAGCT
CGTCTTGTCTCCTTTCACTCTCGCCTTTGATATCGCTGGCTCTGCACCTCGTGGTTTTGGCATCCCTGAGTTCATCTCCAAAATTTCGTATCTCTCTGTT
TTTgtgagttggtttctcctgaaacttatatggttctgggtttagaacttgacatgtagttgtcttaaaggttgaaacttttgttggtttttgctgagtt
tctagcttgaaactatcattttctttctgggtttttggtagctgatgtttccggggaaattacgcttcgaatgtttgctaaagttttgagctttaatttg
agtgtgcctatattgtgctgaatttctgtctgagtttgtcaacttgatttctaagtcgaagttttgtaagatcaaaatcagtttaggaaactggaaaatg
catgttttacttgttctatatggaatctttttatcattggagttccattgattgcagGCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGG
GAAAGAAAGTCATATGCCAAAGgtcagcttcaagatttgatgctttattctgggtcagagaatttttgagaaacctcagttctcacacttcctcgctatg
tttttggttctactgtttgagttcatccgatgagatgaaaacattttttgttggtcagGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCAC
TATGTGCAAAGGAACAGGGAGTGTTCATTACCAAATCAAAGATTACAACTTGAGAAGgtgggattatctcttgtttaacccaagttatatcgcttaaact
actaggcttcatgaatagatccactttattctgacggtctctttgtgttctctgtatattaatgtcgacagttccatttggcaatgcttaagctatccta
gtgatattctaacagataaaaggatttaaagatttatcctttctgtctttacttgtagTGGAGAGAAACCAACAGCAGATTGTGTCGCAGATGCTATAGT
TGAGAATCGAGCTGAGTTAGTTCATCTTCCCTCCTCCTTCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGgtaagcttt
ttaatctcgctcttaatgctctaggcttctgtaaatgtatttgcactgctatatttgatactgatttggtttatatctccaaattgtcaactatgctaat
ttcatatccacgtaaaaaggtgcttgtttgtgttaagagtgatcgcgataggctgtttttcatcagtgtatgcttagaaatttgatggaacatctattga
tattgaagggtgcgatgagctgtactgagtgcaagaacaagctgcaagtcagaatctcagctgatgatgtatgttttgagtctgctattacgtcttctca
gcttaacatctacataaatcccctgtgggatgtatatatactagttattagaaatgaaatgcacatggagaggtagtttggttttgaacaaaactatcac
ttgctaaatacctttactgacgattcattttgcagATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAAGAAGATGGATTATCCGTACGAGgtgag
caccacaaagtctatttatcaacccaacagcttgctatgtttactacatctttaccgtcttatgagtcatattttctatttcagCACATTGTTCACAGCA
TGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCA
ATATGAGgttagtatctctttctacatatgtagatctccttcagcatgagttatttgccaggcttcacttttgaggttatggtcttctagaggcttaaag
catgcataccgtaaaaggtttagtctacaattacctgatagttgaatcttcttaatcctcatttgggatggttttgctacaccaacatagtttcgattcc
atatctggataggtttgtgctatggaattggagacatttgtgggatactgatgtactcagggatctgtattgcatagaattttctgttcaataggaacta
ttgttgttgaatacttcagctttaagcatcaatgagagtttaactatttatgtcttctgtgatcagGAATCTATGCGATATGATCAACTTCGGGACTTGG
TGGCTAAACGCAATCCTGGCTGGGAATATTTGCAGGATgtaagatcgcctatttgtggttttaaagtttaggcaaatctggggaactacattggaatatg
ttagctgaagaagtttagcaatcaccatatagttgtcatggttttacagGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCCCGTCATAGTG
AAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCACGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTgtaagctttcttc
ttctttttggttttagcatcacagttcctgagaccacgggtatagttaagaactaactgctgaacatgtacagGAACTGAATCTCCCATTGAATATTTCC
TCTTGGAGTGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCAC
AATGGGAAGCTAAATGGCGTCAAGAGAAGgttaatcaaggaacttttttacacaattcggtattcatatcacattcacgactccaatgcataccgt
ttatctttttgatttgtagGTGGAGGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACCCATCTTGTTA
AAGTCACAGAAGAAAGCTCAAAAGgtatcaattgaattggttacaagaataagcctacttgatatcattctctcttacacactaaataaggttccaaatt
agatcatacaagaagctctttgcctgaaaatagaacctaagatcacatgttgatttatatgtttattacacagGGAAGCCGGCAAAGGAAGTGGTGGTTC
TTCTAAcctgccaagtgtgtcgaaacgaatctatataaaatggattttgaattgagtttttttgtgcttctttgatgaaaatatgctttgatatgaatct
tgatgggtgtcaaatatgattacacttcaaaatcagttgtaatgttttaaaagaaatgttgtttttgcagacacttggcagattcgttgtgtaccgccac
gtgtatacgatgatctttctttcatgctttgaacttagttttcgtctttctcctatcaatcactctctctataattcctcgtgtctcaccgtcacatttc
aacaagttacgtgtgtctttcatgttatggtattacgaaagatctttaccctttttttaattaaatatctatcgacatcattttggatagaacttaaact
taat

Border_1 (116042_LB2D)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGCCATTGACGCTTATTAACCTTAATAACCATATATATTGAATATATATATCCTGTCAATTTGTTTAAGGTCAATGTGTTATTAACCTTCTCTTGACG
CCATTTAGCTTCCCATTGTGCATCCAAGATTTTGTCTGCGATTTCTCTTTGAGCATTGAGAAGAACTGTCTTCTCGTACAGTTTTGCCGGGTTTTTGAGA
TCCTCTTCACTCCAAGAGGAAATATTCAATGGGAGATTCAGTTCCTGTACATGTTCAGCAGTTAGTTCTTAACTATACCCGTGGTCTCAGGAACTGTGAT
GCTAAAACCAAAAAGAAGAAGAAAGCTTACACCCCAATTCTGAGGACGGGGAGGTGGATTGAGTTTCGTGACTTCAGCCTCCAGAGATTTCTTAGCCTTG
TAATAAGGGACATTCTTCACTATGACGGGGTCTTCCCGAGCACGGACAGGATCAATGGAGACCAAGGCCTGTAAAACCATGACAACTATATGGTGATTGC
TAAACTTCTTCAGCTAACATATTCCAATGTAGTTCCCCAGATTTGCCTAAACTTTAAAACCACAAATAGGCGATCTTACATCCTGCAAATATTCCCAGCC
AGGATTGCGTTTAGCCACCAAGTCCCGAAGTTGATCATATCGCATAGATTCCTGATCACAGAAGACATAAATAGTTAAACTCTCATTGATGCTTAAAGCT
GAAGTATTCAACAACAATAGTTCCTAT

Start of BLAST Alignment:NT 2881 / Intron 9 of 10
First 15 bp Perfect Match:NT 2857 / Intron 9 of 10
BLAST Details:
Query Sequence: 116042_LB2D 
Length: (927 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g53860 68418.t06217 expressed protein                      3230  9.9e-142  1



>At5g53860 68418.t06217 expressed protein
        Length = 3538

  Minus Strand HSPs:

 Score = 3230 (490.7 bits), Expect = 9.9e-142, P = 9.9e-142
 Identities = 658/670 (98%), Positives = 658/670 (98%), Strand = Minus / Plus

Query:   927 ATAGGAACTATTGTTGTTGAATACTTCAGCTTTAAGCATCAATGAGAGTTTAACTATTTA 868
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2261 ATAGGAACTATTGTTGTTGAATACTTCAGCTTTAAGCATCAATGAGAGTTTAACTATTTA 2320

Query:   867 TGTCTTCTGTGATCAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACG 808
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2321 TGTCTTCTGTGATCAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACG 2380

Query:   807 CAATCCTGGCTGGGAATATTTGCAGGATGTAAGATCGCCTATTTGTGGTTTTAAAGTTTA 748
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2381 CAATCCTGGCTGGGAATATTTGCAGGATGTAAGATCGCCTATTTGTGGTTTTAAAGTTTA 2440

Query:   747 GGCAAATCTGGGGAACTACATTGGAATATGTTAGCTGAAGAAGTTTAGCAATCACCATAT 688
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2441 GGCAAATCTGGGGAACTACATTGGAATATGTTAGCTGAAGAAGTTTAGCAATCACCATAT 2500

Query:   687 AGTTGTCATGGTTTTACAGGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCC 628
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2501 AGTTGTCATGGTTTTACAGGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCC 2560

Query:   627 CGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCAC 568
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2561 CGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCAC 2620

Query:   567 GAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGTAAGCTTTCTTCTTCTTTTTGG 508
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2621 GAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGTAAGCTTTCTTCTTCTTTTTGG 2680

Query:   507 TTTTAGCATCACAGTTCCTGAGACCACGGGTATAGTTAAGAACTAACTGCTGAACATGTA 448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2681 TTTTAGCATCACAGTTCCTGAGACCACGGGTATAGTTAAGAACTAACTGCTGAACATGTA 2740

Query:   447 CAGGAACTGAATCTCCCATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCG 388
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2741 CAGGAACTGAATCTCCCATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCG 2800

Query:   387 GCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATC 328
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2801 GCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATC 2860

Query:   327 TTGGATGCACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTTAAT-AACACATTGACCTT 269
             ||||||||||||||||||||||||||||||||||||||||||||| ||   | |    ||
Sbjct:  2861 TTGGATGCACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTTAATCAAGGAACTTTT-TT 2919

Query:   268 AAACAAATTG 259
             | |||| | |
Sbjct:  2920 ACACAATTCG 2929


Border_2 (116042_LB1U)

TGGCTGGCTGGTGGCAGGATATATTGTGGTGTAAACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGAATTAACGCCG
AATTGAATTCGATTTGGTGTATCGAGATTGGTTATGAAATTCAGATGCTAGTGTAATGTATTGGTAATTTGGGAAGATATAATAGGAAGCAAGGCTATTT
ATCCATTWCTTAAAAGCGTCCGCAATGTGTTATTAATTTGTTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGAGG
AAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGGT
ATCAATTGAATTGGTTACAAGAATAAGCCTACTTGATATCATTCTCTCTTACACACTAAATAAGGTTCCAAATTAGATCATACAAGAAGCTCTTTGCCTG
AAAATAGAACCTAAGATCACATGTTGATTTATATGTTTATTACACAGGGAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAAAC
GAATCTATATAAAATGGATTTTGAATTGAGTTTTTTTGTGCTTCTTTGATGAAAATATGCTTTGATATGAATCTTGATGGGTGTCAAATATGATTACACT
TCAAAATCAGTTGTAATGTTTTAAAAGAAATGTTGTTTTTGCAGACACTTGGCAGATTCGTTGTGTACCGCCACGTGTATACGATGATCTTTCTTTCATG
CTTTGAACTTAGTTTTCGTCTTTCTCCTATCAATCACTCTCTCTATAATT

Start of BLAST Alignment:NT 2882 / Intron 9 of 10
First 15 bp Perfect Match:NT 2884 / Intron 9 of 10
BLAST Details:
Query Sequence: 116042_LB1U 
Length: (850 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g53860 68418.t06217 expressed protein                      3031  9.7e-133  1
At3g61260 68416.t06335 DNA-binding family protein / remor...   213  0.30      1
At5g56620 68418.t06561 no apical meristem (NAM) family pr...   194  0.96      1



>At5g53860 68418.t06217 expressed protein
        Length = 3538

  Plus Strand HSPs:

 Score = 3031 (460.8 bits), Expect = 9.7e-133, P = 9.7e-133
 Identities = 607/608 (99%), Positives = 607/608 (99%), Strand = Plus / Plus

Query:   239 TGTTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGA 298
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2931 TATTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGA 2990

Query:   299 GGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCC 358
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2991 GGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCC 3050

Query:   359 ACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGGTATCAATTGAATTGGTTAC 418
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3051 ACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGGTATCAATTGAATTGGTTAC 3110

Query:   419 AAGAATAAGCCTACTTGATATCATTCTCTCTTACACACTAAATAAGGTTCCAAATTAGAT 478
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3111 AAGAATAAGCCTACTTGATATCATTCTCTCTTACACACTAAATAAGGTTCCAAATTAGAT 3170

Query:   479 CATACAAGAAGCTCTTTGCCTGAAAATAGAACCTAAGATCACATGTTGATTTATATGTTT 538
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3171 CATACAAGAAGCTCTTTGCCTGAAAATAGAACCTAAGATCACATGTTGATTTATATGTTT 3230

Query:   539 ATTACACAGGGAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAA 598
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3231 ATTACACAGGGAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAA 3290

Query:   599 ACGAATCTATATAAAATGGATTTTGAATTGAGTTTTTTTGTGCTTCTTTGATGAAAATAT 658
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3291 ACGAATCTATATAAAATGGATTTTGAATTGAGTTTTTTTGTGCTTCTTTGATGAAAATAT 3350

Query:   659 GCTTTGATATGAATCTTGATGGGTGTCAAATATGATTACACTTCAAAATCAGTTGTAATG 718
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3351 GCTTTGATATGAATCTTGATGGGTGTCAAATATGATTACACTTCAAAATCAGTTGTAATG 3410

Query:   719 TTTTAAAAGAAATGTTGTTTTTGCAGACACTTGGCAGATTCGTTGTGTACCGCCACGTGT 778
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3411 TTTTAAAAGAAATGTTGTTTTTGCAGACACTTGGCAGATTCGTTGTGTACCGCCACGTGT 3470

Query:   779 ATACGATGATCTTTCTTTCATGCTTTGAACTTAGTTTTCGTCTTTCTCCTATCAATCACT 838
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3471 ATACGATGATCTTTCTTTCATGCTTTGAACTTAGTTTTCGTCTTTCTCCTATCAATCACT 3530

Query:   839 CTCTCTAT 846
             ||||||||
Sbjct:  3531 CTCTCTAT 3538


>At3g61260 68416.t06335 DNA-binding family protein / remorin family protein
           similar to DNA-binding protein gi|601843 [Arabidopsis thaliana],
           remorin [Solanum tuberosum] GI:1881585; contains Pfam profiles
           PF03763: Remorin C-terminal region, PF03766: Remorin N-terminal
           region
        Length = 1538

  Plus Strand HSPs:

 Score = 213 (38.0 bits), Expect = 0.36, P = 0.30
 Identities = 182/317 (57%), Positives = 183/317 (57%), Strand = Plus / Plus