At1g48850 SYNGENTA 11627
Genomic Sequence (from TAIR)
CCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCATTAAacaaaaaaactctaaaatctccactgttttttcttctgatccaagcttatctgtttcca tttttcttgtctctgtaacattattagaaagcaagagtagtgtttgtttgtgtgtacctgaactgagtgagatttgagatgcaatcattgaatcggcttt ggtatatcattttactctgtttttcagggtgtttgttcaggttctctctagttatcatccactccaaacaggtcccatgatgtctaacgttttggttcta agaatgaacagaacaaacaatacactgcgataaccggtgcttggaagttgtgttaattgaagaaacaatggcaatagctgcatacttatagttgcaggag tgaaaaatgagataagaggaatgcaaatatgcaattgcaggttctattttttttttgctgccaatgttattaccaaaagggctacaagtgagtattctcc aagcttggatgaggttattcagggtaatagggtatcaagttagtaataagagtcagagataccatgaaaggattccaagttgtagtaagaacaactcaaa ttcaaagtgaagttttgtgagttgtgtaattgtgttggagttttgcacaaatgagaagactcttatagaaacagaggggttgaagaagaagcgatatttg cccatctcacttgaaaacactaaccggagataaaccaaa◄ttaa◄ttggaactattc►tcagttatggtttggtcctcgtcg►ttttgggttagtgttgt tggtaggtggagaattttgcatttgcatttgcacaacgaagaagaagaccacaagagccatttgcaattaggcataatatatgtcctaactcaccaaccc cctcaaaattgccaccaacttcaaatttctctcctttaaacctttctcaatcatctttcttctgccttggaatcctgatcATGGCGTCGTCTTCTCTCAC TTCGAAATCCATTCTCGGATCCACCAAACTCGGTTCTTCTTCTCTTCCCTCGGAGCTCCGTCGTCTCTCTTCTCCCGCCGTTCAGATCTCTCTCCGTACC CAAACCAGGAAGAACTTCCgtgagttctctctctctgattattttcgataatttcttagattttctgtttctagcatatagaagaaagatgtgtaatttg aatctttagggcagttatggttgactgaatttgattcacatttccattagaacgaattggggagatggaaagttgaaagctttaggagtttttgaattct ggtttttaaattggcagAGATACAAGCTACTGGAAGTTCATATGGGACTCATTTTCGAGTTTCAACTTTTGGAGAATCACATGGAGGAGGAGTTGGTTGT ATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGgtattttgaggaagaagaaagctcttactata taatatgatcgtttgatttacatgttggtttgctttattagGAGGCCTGGTCAGAGCAGGATCACAACTCCTAGAAAAGAGACTGATACTTGCCGGATAT CGTCTGGAGTCTCTGAAGgtctagttatacattctatttcatagtttgagtttgattttgtttctcagccgttgttctaattgttgatatccataaattt gcagGAATGACGACAGGAACACCTATCCATGTGTTTGTACCAAACACAGATCAGAGAGGACTTgtaagttttttttacttctctatgcatataactgtac tcgatattgttaactagacttttgctatttgcattagaaagacaacagttttgaagtatagaaagcctgtagattctaacctttgaggaactcactggat tttcagGATTACAGTGAAATGTCGGTTGCCTATAGACCATCGCATGCTGATGCAACTTATGACATGAAGTATGGTGTCAGATCAGTGCAGgtatcttttt ctgttaaattactcacatgctacttttcttggtaaggttttatgtgttcaaaggcattgttcagcttaacataccttaagcgttattcttttcaagGGTG GAGGAAGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGgtgtgtttact ttctgattttgcaaatgacactgctctcaaagaatcaatttacattgaactttttatatcccttctcatgtttggttcttctttcatctctctatttttt ctatcttagtatatccttgcaaataagatgccccttattaactcagtgacccaattctaatgattcacgcaactctttaaagtttgcttctggacttgct tatgtttgtctctgttgtttttttgtgtctccagATTCTTGCCTATGTCTCGCAAGTTCACCATGTTGTACTTCCAGAAGAATTGGTAGACCACGAGAAT TTAACACTCGAACAGgtgcaaatcctttttcaaagtataatttacatgttgttttttgagtagttttcatactgtaacggaggtaaaacccattttggtg acctggttcttgctgtcaattttctgcaactttcatccaccgttataactattttcttaatagtatttcttcttattaaggttcttctggtgatattctt acctcattttgtttattttacagATAGAAAATAACATTGTCAGATGCCCTAATCCCGAGTATGCGGAAAAGATGATAGCTGCGATTGATGCTGTCAGGAC AAAAGGGAACTCTGTTGGTGGTGTTGTGACCTGCATTGTTCGGAATGCTCCACGTgtatgaactcactataccatgagcttaatctgtgcgtcctcatgt agtttgattaatgaacttcagtgaatgcttatttaaactactattcgcagGGGCTTGGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGC TTGTATGTCGCTACCTGCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGgtatagaaagttatacttttctctcctttgtccaatctaaaatcaac ctcctttggagctgtataaatcatacgcaaatgaacccgcagGTACCTTTTTGACTGGTCTTGAACACAATGATGAGTTCTATACCGATGAAAATGGAAG AATACGTACCAGAACCAACCGATCTGGTGGAATTCAGgttagttaagtcttgtatttaatatgtcaataataaactacatttctcctgagagaattccta atattggtcaatttgtatagGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAgtaagtttgtgata aactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttttctttccaatgcgcagAGGAAGCAAAATACGGTAACCAGAGAC AAGGTAGAAACCGAAATGATTGCGCGTGGTCGTCATGATCCTTGTGTTGTTCCACGAGgtgattatatacaccgaatccaaaccattgaatcaattcact ttattattcgggattttgattttgtgtttgtttgcagCTGTGCCAATGGTGGAAGCAATGGTGGCTCTAGTTCTTGTGGATCAATTGATGGCGCAATACG CACAATGCCATTTGTTTCCAATAAATCCAGAGTTGCAGGAACCTCTCCAGATAGAGCAGCCGCAAAATGCTACTGCTTTGTAAgcaaatctcgagaagat aaagagtcatagagagtgagagttcgcttttgttgtgtgattattatgctgaataaaaaaatgttaattttgtgcccaccagaaaaacaaagaacatgat tttttataagaggatttgcttctatatcattcagctaaatgtgattttaccacgaacataaactattttctataatttttttggtgtaaaaccaaacact tttctacaacatacatgatacatgtaaatatacaaacaaacgtaactaattacacattgctctgttctctgttttttttcgtactctcgtgggacgaaaa ccgacgtagtttttttcagatgtttttacttggttttcttgttatcgtctttgctctgttcaagaaggaccggagcagccggaatgctaaaccaccactc tttaagccgccgcatcaaccgttccgtgcttgctcttcgtggtggtgagtatcttgtgaacagttcaagaaacaccaccagaatcagattgttccaaggc accaatgccatcatcgttgcagcgatcacaatcgcaaccgcaaacttctcactcgcctgtttttcgataacatttaagtggttgcagaaaactaaaaacc acgt
Border_1 (11627_RB1)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCGCGCAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGTGTTTGGTTAGTTTGGTTTATCTCCGGTTAGTGTTTTCAAGTGAGATGGGCAAATATCGCTTCTTCTTCAACCCCTCTGTTTCTATAAGAGTCTTCT
CATTTGTGCAAAACTCCAACACAATTACACAACTCACAAAACTTCACTTTGAATTTGAGTTGTTCTTACTACAACTTGGAATCCTTTCATGGTATCTCTG
ACTCTTATTACTAACTTGATACCCTATTACCCTGAATAACCTCATCCAAGCTTGGAGAATACTCACTTGTAGCCCTTTTGGTAATAACATTGGCAGCAAA
AAAAAAATAGAACCTGCAATTGCATATTTGCATTCCTCTTATCTCATTTTTCACTCCTGCAACTATAAGTATGCAGCTATTGCCATTGTTTCTTCAATTA
ACACAACTTCCAAGCACCGGTTATCGCAGTGTATTGNTTGGTCTGGTCATTCTTAGCAACCAAACGTTAGACATCATGGGACCTGTTTGGAGTGGATGAT
AACTAGAGAGAACCTGAACAAACACCCTGAAAAACAGAGTAAAATGATATACCAAAGCCGATTCAATGATTGCATCTCAAATCTCACTCAGTTCAGGTAC
ACACAAACAAACACTACTCTTGCTTTCTAATAATGTTACAGAGACAAGAAAAATGGAAACAGATAAGCTTGGATCAGAAGAAAAAACAGTGGAGATTTTA
GAGTTTTTTTGTTTAATGCTTTGTGATTCTTTCAAGGACTTGGAAGTAGTCGGGGAAGGTTTTCCTGGTGCAACCGGGGTCATTGATGGTGATTGGAACA
TCAGCACAAGCTGCAAGAGAGAATGCCATTGCCATTCTATGATCATCATATGTATCAATCTCTGCCGGTTTCACCTTTTTCGGCGGAGTAATCACACAAT
AATCTGAACCTTCTTCCACTGTAGCTCCCAGCTGGACACAAATACCGCAAAATTTCTTAGAATGAGCACTGTAAACAGAAAGAGAGAGAGAGAAGAAGAA
TTTTACTTTTCTAAGCTCTGTGCAAATGGCAATCATCCTTTCCGTCTCCTTTACTCTCCAGCTAGCCACTATATTGACCAAATAGAATTAAGTGACCATG
AATCTTGAGAAACCTTATATTATAAGAGAGAGCTTTTTACTTACCATCTCTAATGGTGGTTGGACCATCGGCAAAGAGAGCAACGACGGCAAGAGTCATT
GCTACATCAGGCATTTTGTTCATGTTGACATCAATAGCCCGCAAGTGTCTCATTCCAAAAGCATCTCTAGACGGCCCTGTCACAGTCACACTGGTCTCTG
TCCAGGACACTTTACATCCCATTTTCTCAAGAACCTCGGCAAATTTCACATCTCCCTAGAGATTCATCCAAAAATTGGACTTAGATTCTTGCGAATATGT
TACATACAACTTGTCAAAGCCTTAAAAAGATGAAACTTTGACCTAAACGAATTTCACTATAAACTTAACAGCCTCTTTGATGATTCAGTGTACAAATATT
ACCTGCAAACTGGTCGTTCCACAACCTTCAACAGTGACAGTTTCACCGGTAATGGCAGCACCAGCCAGGAAATAACTAGCACTAGAAGCATCACCTTCTA
CGTAAGCATTACCCGGCGACCTGAATCATTTCCCATATTAGTCATTATTTTGTCAATCTAAGGTATGTGATTTCAGAAAAGGAAGAGAATAATAACTCTT
ACTTGTATTTTTGCCCACCCTTAACAAAGAAACGATCCCAGCTTTCACTATGCTCAGCACTTACCCCAAAACGTTCCATCAACTTCAATGTCATTTCAAC
ATACGGAACAGAAATCAATTTATCGACAATTTCAATTTCGACGTCTCCAAGAGCTAAGGGAGCTGCCATGAGCAGAGCGGTCAAGTACTGACTACTAATA
GATCCAGAAAGCTTCACCTGCAAATGCAAAAAATGTTCGATGCGTCAATAAAGAAACCATACAAGGAAAAGGGTAATCAAGAGAGAAAACTAATCCCTAC
TAAAAAAAAACAATTCGTTTTCAGGAACAATACATTGACAACAAACAAAAAAAATGAAATCTTGTCAAGTAAGGCTATGATGAACACAAATTGCTGCAAG
TGTTTATAAAGTTATAAATTCACATGCCATTTGCAAGATCTCACCTTTCCACCAGGAAGGCCACCATTAGCGTTGACACGAACAGGAGGGCAGTTAGTGC
CAAGAGTACATTCAACATCAGCACCAAGCTGCTTAAGACCAACAACCAAATCCCCTATAGGTCTCTCTCTCATCCGAGGCACCCCATCAAGGACATAACT
GAAATAAACCGATTGAAAAGCATCAAAACAAGATCGATTCTTAAGAAATCAAAACTATTCAGCATTTACTCCTTCAATATACCTTGCGTTGCCACTTGCA
GCAGTAACTGCGGCGGTAAGTGGACGCATTGCTGTTCCTGCATTGCCGAGGTAAAGTTCGATATCACTCTTGGAATCAATGGAAGCTGGAAATACCCCGC
CACATCCTTCAACTACAGCACGATTGTTTTCACTGTGAGTTTCCACATTAAGTCCCAATATCTTCAACGCATCAAGCATGTAATTGATGTCATCACTGTT
CAACAAGTTGTCCACTACAGTAGTTCCCTATATAAGCACAGCAAAATGGTAAAGTTTATATCTTTAATAATCTAAATTCGGAGTACAGAGAAGGAAGAAA
TGAAGTGATACATTTATATATACCTCAGATAGAGCAGCGAGAAGCAGAATTC
| Start of BLAST Alignment: | NT < 233 / Upstream |
| First 15 bp Perfect Match: | NT < 237 / Upstream |
BLAST Details: Query Sequence: 11627_RB1 Border Length: (2952 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T24P22 68112 13257 0. 1 F27K7 67987 13257 0. 1 F4L23 8264 7081 1.1e-313 1 T6C20 68339 576 1.5e-16 1 T24P22 68112 Length = 18,062 Minus Strand HSPs: Score = 13257 (1995.1 bits), Expect = 0., P = 0. Identities = 2683/2744 (97%), Positives = 2683/2744 (97%), Strand = Minus / Plus Query: 2952 GAATTCTGCTTCTCGCTGCTCTATCTGAGGTATATATAAATGTATCACTTCATTTCTTCC 2893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4801 GAATTCTGCTTCTCGCTGCTCTATCTGAGGTATATATAAATGTATCACTTCATTTCTTCC 4860 Query: 2892 TTCTCTGTACTCCGAATTTAGATTATTAAAGATATAAACTTTACCATTTTGCTGTGCTTA 2833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4861 TTCTCTGTACTCCGAATTTAGATTATTAAAGATATAAACTTTACCATTTTGCTGTGCTTA 4920 Query: 2832 TATAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACATCAATTACATGCTTG 2773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4921 TATAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACATCAATTACATGCTTG 4980 Query: 2772 ATGCGTTGAAGATATTGGGACTTAATGTGGAAACTCACAGTGAAAACAATCGTGCTGTAG 2713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4981 ATGCGTTGAAGATATTGGGACTTAATGTGGAAACTCACAGTGAAAACAATCGTGCTGTAG 5040 Query: 2712 TTGAAGGATGTGGCGGGGTATTTCCAGCTTCCATTGATTCCAAGAGTGATATCGAACTTT 2653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5041 TTGAAGGATGTGGCGGGGTATTTCCAGCTTCCATTGATTCCAAGAGTGATATCGAACTTT 5100 Query: 2652 ACCTCGGCAATGCAGGAACAGCAATGCGTCCACTTACCGCCGCAGTTACTGCTGCAAGTG 2593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 5101 ACCTCGGCAATGCAGGAACAGCAATGCGTCCACTTACCGCCGCAGTTACTGCTGCAGGTG 5160 Query: 2592 GCAACGCAAGGTATATTGAAGGAGTAAATGCTGAATAGTTTTGATTTCTTAAGAATCGAT 2533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5161 GCAACGCAAGGTATATTGAAGGAGTAAATGCTGAATAGTTTTGATTTCTTAAGAATCGAT 5220 Query: 2532 CTTGTTTTGATGCTTTTCAATCGGTTTATTTCAGTTATGTCCTTGATGGGGTGCCTCGGA 2473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5221 CTTGTTTTGATGCTTTTCAATCGGTTTATTTCAGTTATGTCCTTGATGGGGTGCCTCGGA 5280 Query: 2472 TGAGAGAGAGACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTG 2413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5281 TGAGAGAGAGACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTG 5340 Query: 2412 AATGTACTCTTGGCACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTG 2353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5341 AATGTACTCTTGGCACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTG 5400 Query: 2352 GTGGAAAGGTGAGATCTTGCAAATGGCATGTGAATTTATAACTTTATAAACACTTGCAGC 2293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5401 GTGGAAAGGTGAGATCTTGCAAATGGCATGTGAATTTATAACTTTATAAACACTTGCAGC 5460 Query: 2292 AATTTGTGTTCATCATAGCCTTACTTGACAAGATTTCANNNNNNNNGTTTGTTGTCAATG 2233 |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 5461 AATTTGTGTTCATCATAGCCTTACTTGACAAGATTTCATTTTTTTTGTTTGTTGTCAATG 5520 Query: 2232 TATTGTTCCTGAAAACGAATTGNNNNNNNNNAGTAGGGATTAGTTTTCTCTCTTGATTAC 2173 |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 5521 TATTGTTCCTGAAAACGAATTGTTTTTTTTTAGTAGGGATTAGTTTTCTCTCTTGATTAC 5580 Query: 2172 CCTTTTCCTTGTATGGTTTCTTTATTGACGCATCGAACATTTTTTGCATTTGCAGGTGAA 2113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5581 CCTTTTCCTTGTATGGTTTCTTTATTGACGCATCGAACATTTTTTGCATTTGCAGGTGAA 5640 Query: 2112 GCTTTCTGGATCTATTAGTAGTCAGTACTTGACCGCTCTGCTCATGGCAGCTCCCTTAGC 2053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5641 GCTTTCTGGATCTATTAGTAGTCAGTACTTGACCGCTCTGCTCATGGCAGCTCCCTTAGC 5700 Query: 2052 TCTTGGAGACGTCGAAATTGAAATTGTCGATAAATTGATTTCTGTTCCGTATGTTGAAAT 1993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5701 TCTTGGAGACGTCGAAATTGAAATTGTCGATAAATTGATTTCTGTTCCGTATGTTGAAAT 5760 Query: 1992 GACATTGAAGTTGATGGAACGTTTTGGGGTAAGTGCTGAGCATAGTGAAAGCTGGGATCG 1933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5761 GACATTGAAGTTGATGGAACGTTTTGGGGTAAGTGCTGAGCATAGTGAAAGCTGGGATCG 5820 Query: 1932 TTTCTTTGTTAAGGGTGGGCAAAAATACAAGTAAGAGTTATTATTCTCTTCCTTTTCTGA 1873 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5821 TTTCTTTGTTAAGGGTGGGCAAAAATACAAGTAAGAGTTATTATTCTCTTCCTTTTCTGA 5880 Query: 1872 AATCACATACCTTAGATTGACAAAATAATGACTAATATGGGAAATGATTCAGGTCGCCGG 1813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5881 AATCACATACCTTAGATTGACAAAATAATGACTAATATGGGAAATGATTCAGGTCGCCGG 5940 Query: 1812 GTAATGCTTACGTAGAAGGTGATGCTTCTAGTGCTAGTTATTTCCTGGCTGGTGCTGCCA 1753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5941 GTAATGCTTACGTAGAAGGTGATGCTTCTAGTGCTAGTTATTTCCTGGCTGGTGCTGCCA 6000 Query: 1752 TTACCGGTGAAACTGTCACTGTTGAAGGTTGTGGAACGACCAGTTTGCAGGTAATATTTG 1693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6001 TTACCGGTGAAACTGTCACTGTTGAAGGTTGTGGAACGACCAGTTTGCAGGTAATATTTG 6060 Query: 1692 TACACTGAATCATCAAAGAGGCTGTTAAGTTTATAGTGAAATTCGTTTAGGTCAAAGTTT 1633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6061 TACACTGAATCATCAAAGAGGCTGTTAAGTTTATAGTGAAATTCGTTTAGGTCAAAGTTT 6120 Query: 1632 CATCTTTTTAAGGCTTTGACAAGTTGTATGTAACATATTCGCAAGAATCTAAGTCCAATT 1573 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 6121 CATCTTTTTAAGGCTTTGACAAGTTGTATGTAACATATTCGCAAGAATCTAAGTTCAATT 6180 Query: 1572 TTTG-GATGAATCTCTAGGGAGATGTGAAATTTGCCGAGGTTCTTGAGAAAATGGGATGT 1514 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6181 TTTGTGATGAATCTCTAGGGAGATGTGAAATTTGCCGAGGTTCTTGAGAAAATGGGATGT 6240 Query: 1513 AAAGTGTCCTGGACAGAGACCAGTGTGACTGTGACAGGGCCGTCTAGAGATGCTTTTGGA 1454 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 6241 AAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGGCCGTCTAGAGATGCTTTTGGA 6300 Query: 1453 ATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGATGTAGCAATGACT 1394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6301 ATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGATGTAGCAATGACT 6360 Query: 1393 CTTGCCGTCGTTGCTCTCTTTGCCGATGGTCCAACCACCATTAGAGATGGTAAGTAAAAA 1334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6361 CTTGCCGTCGTTGCTCTCTTTGCCGATGGTCCAACCACCATTAGAGATGGTAAGTAAAAA 6420 Query: 1333 GCTCTCTCTTATAATATAAGGTTTCTCAAGATTCATGGTCACTTAATTCTATTTGGTCAA 1274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6421 GCTCTCTCTTATAATATAAGGTTTCTCAAGATTCATGGTCACTTAATTCTATTTGGTCAA 6480 Query: 1273 TATAGTGGCTAGCTGGAGAGTAAAGGAGACGGAAAGGATGATTGCCATTTGCACAGAGCT 1214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6481 TATAGTGGCTAGCTGGAGAGTAAAGGAGACGGAAAGGATGATTGCCATTTGCACAGAGCT 6540 Query: 1213 TAGAAAAGTAAAANNNNNNNNNNNNNNNNNNNNNNNNGTTTACAGTGCTCATTCTAAGAA 1154 ||||||||||||| ||||||||||||||||||||||| Sbjct: 6541 TAGAAAAGTAAAATTCTTCTTCTCTCTCTCTCTTTCTGTTTACAGTGCTCATTCTAAGAA 6600 Query: 1153 ATTTTGCGGTATTTGTGTCCAGCTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGT 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6601 ATTTTGCGGTATTTGTGTCCAGCTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGT 6660 Query: 1093 GATTACTCCGCCGAAAAAGGTGAAACCGGCAGAGATTGATACATATGATGATCATAGAAT 1034 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6661 GATTACTCCGCCGAAAAAGGTGAAACCGGCAGAGATTGATACATATGATGATCATAGAAT 6720 Query: 1033 GGCAATGGCATTCTCTCTTGCAGCTTGTGCTGATGTTCCAATCACCATCAATGACCCCGG 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6721 GGCAATGGCATTCTCTCTTGCAGCTTGTGCTGATGTTCCAATCACCATCAATGACCCCGG 6780 Query: 973 TTGCACCAGGAAAACCTTCCCCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCATTA 914 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6781 TTGCACCAGGAAAACCTTCCCCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCATTA 6840 Query: 913 AACAAAAAAACTCTAAAATCTCCACTGTTTTTTCTTCTGATCCAAGCTTATCTGTTTCCA 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6841 AACAAAAAAACTCTAAAATCTCCACTGTTTTTTCTTCTGATCCAAGCTTATCTGTTTCCA 6900 Query: 853 TTTTTCTTGTCTCTGTAACATTATTAGAAAGCAAGAGTAGTGTTTGTTTGTGTGTACCTG 794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6901 TTTTTCTTGTCTCTGTAACATTATTAGAAAGCAAGAGTAGTGTTTGTTTGTGTGTACCTG 6960 Query: 793 AACTGAGTGAGATTTGAGATGCAATCATTGAATCGGCTTTGGTATATCATTTTACTCTGT 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6961 AACTGAGTGAGATTTGAGATGCAATCATTGAATCGGCTTTGGTATATCATTTTACTCTGT 7020 Query: 733 TTTTCAGGGTGTTTGTTCAGGTTCTCTCTAGTTATCATCCACTCCAAACAGGTCCCATGA 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7021 TTTTCAGGGTGTTTGTTCAGGTTCTCTCTAGTTATCATCCACTCCAAACAGGTCCCATGA 7080 Query: 673 TGTCTAACGTTT-GGTTGCTAAGAATGACCAGACCAANCAATACACTGCGATAACCGGTG 615 |||||||||||| |||| |||||||||| |||| ||| |||||||||||||||||||||| Sbjct: 7081 TGTCTAACGTTTTGGTT-CTAAGAATGAACAGAACAAACAATACACTGCGATAACCGGTG 7139 Query: 614 CTTGGAAGTTGTGTTAATTGAAGAAACAATGGCAATAGCTGCATACTTATAGTTGCAGGA 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7140 CTTGGAAGTTGTGTTAATTGAAGAAACAATGGCAATAGCTGCATACTTATAGTTGCAGGA 7199 Query: 554 GTGAAAAATGAGATAAGAGGAATGCAAATATGCAATTGCAGGTTCTANNNNNNNNNNGCT 495 ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 7200 GTGAAAAATGAGATAAGAGGAATGCAAATATGCAATTGCAGGTTCTATTTTTTTTTTGCT 7259 Query: 494 GCCAATGTTATTACCAAAAGGGCTACAAGTGAGTATTCTCCAAGCTTGGATGAGGTTATT 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7260 GCCAATGTTATTACCAAAAGGGCTACAAGTGAGTATTCTCCAAGCTTGGATGAGGTTATT 7319 Query: 434 CAGGGTAATAGGGTATCAAGTTAGTAATAAGAGTCAGAGATACCATGAAAGGATTCCAAG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7320 CAGGGTAATAGGGTATCAAGTTAGTAATAAGAGTCAGAGATACCATGAAAGGATTCCAAG 7379 Query: 374 TTGTAGTAAGAACAACTCAAATTCAAAGTGAAGTTTTGTGAGTTGTGTAATTGTGTTGGA 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7380 TTGTAGTAAGAACAACTCAAATTCAAAGTGAAGTTTTGTGAGTTGTGTAATTGTGTTGGA 7439 Query: 314 GTTTTGCACAAATGAGAAGACTCTTATAGAAACAGAGGGGTTGAAGAAGAAGCGATATTT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7440 GTTTTGCACAAATGAGAAGACTCTTATAGAAACAGAGGGGTTGAAGAAGAAGCGATATTT 7499 Query: 254 GCCCATCTCACTTGAAAACACTAACCGGAGATAAACCAAACTAA 211 |||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 7500 GCCCATCTCACTTGAAAACACTAACCGGAGATAAACCAAATTAA 7543 F27K7 67987 Length = 54,313 Minus Strand HSPs: Score = 13257 (1995.1 bits), Expect = 0., P = 0. Identities = 2683/2744 (97%), Positives = 2683/2744 (97%), Strand = Minus / Plus
Border_2 (11627_RB2)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCGCGCAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGTGTTTGCATTTTGGGTTAGTGTTGTTGGTAGGTGGAGAATTTTGCATTTGCATTTGCACAACGAAGAAGAAGACCACAAGAGCCATTTGCAATTAGG
CATAATATATGTCCTAACTCACCAACCCCCTCAAAATTGCCACCAACTTCAAATTTCTCTCCTTTAAACCTTTCTCAATCATCTTTCTTCTGCCTTGGAA
TCCTGATCATGGCGTCGTCTTCTCTCACTTCGAAATCCATTCTCGGATCCACCAAACTCGGTTCTTCTTCTCTTCCCTCGGAGCTCCGTCGTCTCTCTTC
TCCCGCCGTTCAGATCTCTCTCCGTACCCCAAACCAGGAAGAACTTCCGTGAGTTCTCTCTCTCTGATTATTTTCGATAATTTCTTAGATTTTCTGTTTC
TAGCATATAGAAGAAAGATGTGTAATTTGAATCTTTAGGGCAGTTATGGTTGACTGAATTTGATTCACATTTCCATTAGAACGAATTGGGGAGATGGAAA
GTTGAAAGCTTTAGGAGTTTTTGAATTC
| Start of BLAST Alignment: | NT < 220 / Upstream |
| First 15 bp Perfect Match: | NT < 197 / Upstream |
BLAST Details: Query Sequence: 11627_RB2 Border #2 Length: (728 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T24P22 68112 2574 3.4e-110 1 F27K7 67987 2574 4.1e-110 1 T2P3 68413 563 3.0e-19 1 T6C20 68339 563 3.0e-19 1 T24P22 68112 Length = 18,062 Plus Strand HSPs: Score = 2574 (392.3 bits), Expect = 3.4e-110, P = 3.4e-110 Identities = 530/543 (97%), Positives = 530/543 (97%), Strand = Plus / Plus Query: 187 TCAGTTTAAACTATCAGTGTTTG-CATTTTGGGTTAGTGTTGTTGGTAGGTGGAGAATTT 245 |||||| | | | || | | | |||||||||||||||||||||||||||||||||| Sbjct: 7556 TCAGTT-ATGGTTTG-GTCCTCGTCGTTTTGGGTTAGTGTTGTTGGTAGGTGGAGAATTT 7613 Query: 246 TGCATTTGCATTTGCACAACGAAGAAGAAGACCACAAGAGCCATTTGCAATTAGGCATAA 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7614 TGCATTTGCATTTGCACAACGAAGAAGAAGACCACAAGAGCCATTTGCAATTAGGCATAA 7673 Query: 306 TATATGTCCTAACTCACCAACCCCCTCAAAATTGCCACCAACTTCAAATTTCTCTCCTTT 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7674 TATATGTCCTAACTCACCAACCCCCTCAAAATTGCCACCAACTTCAAATTTCTCTCCTTT 7733 Query: 366 AAACCTTTCTCAATCATCTTTCTTCTGCCTTGGAATCCTGATCATGGCGTCGTCTTCTCT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7734 AAACCTTTCTCAATCATCTTTCTTCTGCCTTGGAATCCTGATCATGGCGTCGTCTTCTCT 7793 Query: 426 CACTTCGAAATCCATTCTCGGATCCACCAAACTCGGTTCTTCTTCTCTTCCCTCGGAGCT 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7794 CACTTCGAAATCCATTCTCGGATCCACCAAACTCGGTTCTTCTTCTCTTCCCTCGGAGCT 7853 Query: 486 CCGTCGTCTCTCTTCTCCCGCCGTTCAGATCTCTCTCCGTACCCCAAACCAGGAAGAACT 545 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 7854 CCGTCGTCTCTCTTCTCCCGCCGTTCAGATCTCTCTCCGTACCC-AAACCAGGAAGAACT 7912 Query: 546 TCCGTGAGTTCTCTCTCTCTGATTATTTTCGATAATTTCTTAGATTTTCTGTTTCTAGCA 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7913 TCCGTGAGTTCTCTCTCTCTGATTATTTTCGATAATTTCTTAGATTTTCTGTTTCTAGCA 7972 Query: 606 TATAGAAGAAAGATGTGTAATTTGAATCTTTAGGGCAGTTATGGTTGACTGAATTTGATT 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7973 TATAGAAGAAAGATGTGTAATTTGAATCTTTAGGGCAGTTATGGTTGACTGAATTTGATT 8032 Query: 666 CACATTTCCATTAGAACGAATTGGGGAGATGGAAAGTTGAAAGCTTTAGGAGTTTTTGAA 725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8033 CACATTTCCATTAGAACGAATTGGGGAGATGGAAAGTTGAAAGCTTTAGGAGTTTTTGAA 8092 Query: 726 TTC 728 ||| Sbjct: 8093 TTC 8095 F27K7 67987 Length = 54,313 Plus Strand HSPs: Score = 2574 (392.3 bits), Expect = 4.1e-110, P = 4.1e-110 Identities = 530/543 (97%), Positives = 530/543 (97%), Strand = Plus / Plus