At3g06960 SYNGENTA 117405
Genomic Sequence (from TAIR)
accaagttggaatcctagaggaaccatgcacgaaacaccccctaccaaccattaaaaaagaacttttctcttctaaacatttgtatattattcacaaaga ataaagattaaaaaagcatcgagatattatgtgtcgctagctgcggttattttaatcattacatagacactggtaattccatagcaaacattgaatttta agcttttgaggcaaatgaattgatatgaatttctaaagttcctagtttctttgttcctactcttttattcaaaccgaataattcaatccataaccggaat aaatcgattcttttaaccgttagacgccttctttgttctttaagccggtttaattaaacgggaagcattcttcttatgaaaaccaaaaacggcaaggtgt ttatcgaacaaatccagagtaagagtgtgtttggtcatctccaggtcagctgggtgtagaaatcgagcgacggcggcggagacgacggagATGAACAGAA TGAGATGGGTCGGAGAGGGAGACATCTGGGACCTCGATATGTCAACTCCGGTGACGCTCGAGGGCACCGCACGAGCTGTTCCTGACGATCCTCTTCCTCT AGGTCTCTCTAGAGGCACTCGTCTATCTCGCCCTAAGCAAGTTGAGTTCTTCCACCGCTTCATGGCCTCACCTCTCATCCCTTCCTTCTCCCCTATCCGT CCCAACACCGGA◄GATGGAGGCGGTGGTGGATTCTCTCTTCAAAGAGTCCTCACTCTTCCTTTCTCCAACAACTGgtatacctcccc►aaattcaaaaat cctaactttttttttttctgata◄ctttcggtg►aaagttcgataattattttgtttttgtgaatcccaagGCTTGTGTCTCTTCTGGGCCAATTCGATG TTCAGAGATTCGTAACGGAGATAGATAAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTAGCTTCTCGTTTAAACACAATTGGCAAGCATTTGAA GGATAAATCTTTGTACGCATTGGGTTTTTGTTCTGAGTTTTTGTTATCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTACAAAGGTGATCTCGAT AAGAATCCTAGAGCTAAGGCTATCTTCAATCACGAGgcaatttctctgttaccctcttttcaatttcttgactctgttaataatatttcactatttggtt ggcaatgtgattcattgttgatttggatcataccaattggttgctgaggtaatgaagtccgctacactttgttctgactcacgtctctattttttgttgg tttcagTTTCCGCTTCACAATCTGACAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATGGCTA TTGATCTAGCATCTCTTCCTGCTGAATCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGA AGTGCCTCCACCGTCACTGCTTCCTGGTTTGTCTCTGAAATCTGCAGTCTCTTATAGGACAAACATGGATCTCTGGAGGGGTACCACTCCAAAGCTCGAA ACTTGCAAGCCCTATGATGTCTTCCTCAGTAGTCCTCATGTCGCAGTATCTGGGATTATCGgtatgataagtttcttcaacttatttcagaagcatttta ttgtcaagactgaaagttttgtgatttctctaataagttttgttcaactcttatcatttgagttctccaattccaatatttgatgttacagaactagtga tggaaatgggaatttttgggatattttggtttctttcgactattgaatagctaatttgttttcctctgattgaaaattttatgtatgagtgagccttgag ccttcaggtttggaagcacgggtcttttttatgatctttttggtgctgttactaagagtttcattaatcccacagGCTCTGTGATGACCGCAGCATTTGG TGAAAATTCAATCAGATCAAAATTTGAAAATGATTCTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTGATGCC TTAGGGCGGGCATCACTCACAGCTCAATATGGAAACTTCCAGAAATTCTTCTTTGATCTCACCCGTTTCCATGCTAGATTAGACTTTCCGCATGGTTTGA GGTTTCTTACCGGTGCCACTAGCGTCGCACAAGATCTTTTAAATTCTCGGCAGCCTAGTTTAGAAGCATTTCAGAAAATCTGCCCTGAAGTATTAGTTTC TCTACAGCAACAGgtaaaataaacgatattctactatgagcaaacagtctaccagacacagaaattctcaaattcatagtttcagctacttgattcataa caatcttctacgggttttgcagATTGTTGGACCGTTTAGTTTCAAAGTGGAGTCTGGAATTGAGATCGATCTGAGGAACGGAGCTAACCCTGTGACTGTA GATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTGCTTCTTTCTGCCAAGGCTGTTGTTTCGTACTCCCCAAAACAGAATGAGTTCATGGTTGAGC TTCGTTTCTTTGAGACATAGtatcaggattttccactcaaaatgtcaagcttgatcctgtgaagattgtagtcttgcagagaagtaaatactaaatagac aatgttctaattgttcagtttcttatgtcaaacagaagaatgtttcaatagaagggaagtttacattttgttatagtgtgatgtctaccagaactagtaa caggacaatccaatggaagctttagatgatcttccttatacttaacagacacaagacaaagaccatgaggcgacgcaggcaaactagtatactttgcaag caccctcctgtctttggtttcgagaatcattgggacaatgtctgaatccagtgcttcttttccaatctgaatcagcaaagctacctgcatatgtaaagaa ctttagactaaaaaaacattatatcgccatgtcaagcatgtaaaagagagtgtagaactaaccatgtttctgacttgtctgtacaaaaagccagaacctt caac
Border_1 (117405_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTWTCAGAAAAAAAAAA
AGTTAGGATTTTTGANTTTGGGGAGGTNTNCCAGTTGTTGGANAANGGAANAGNGAGGNCTTTTTGAANAGANAATCCNCCNCCGCCTCCNTNTCCGGTG
TTGGGACGGATAAGGGTACAAGGAAGGGATGAGAAGGTGAGGCCATGAATCGGTGGAAGAACTCAACTTGCTTAGGGCGAGATAGACGAAGTGCCTCTAG
AGAGACCTAGAGGAAGAGGATCGTCAGGAGCAGCTCGTGCGGTGCCCTCGAGCGTCACCGGAGTTGACATATCGAGGTCCCAGATGTCTCCCTCTCCGAC
CCATCTCATTCTGTTCATCTCCGTCGTCTCCGCCGCCGTCGCTCGATTTCTACACCCAGCTGACCTGGAGATGACCAAACACACTCTTACTCTGGATTTG
TTCGATAAACACCTTGCCGTTTTTGGTTTTCATAAGAAGAATGCTTCCCGTTTAATTAAACCGGCTTAAAGAACAAAGAAGGCGTCTAACGGTTAAAAGA
ATCGATTTATTCCGGCTATGGATTGAATTATTCGGTTTGAATAAAAGAGTAGGAACAAAGGGACTAGTATCTTTAGAAATTGATATCAATTCATCTGCCT
CAAAAGCTTGGAATTCAATGTCTGCTATGGAATTCCCAGTGTTTATGTAATGAGTTAAAATAACCGCAGCTAGCACACACTATAATAACTCAGATGCTTT
TGTTAATCTATTGTTCTTTGTGAATAATATACTAATGTTTAGAAGAGGAAAGTTCTTTGTTAATGGTTGGTAGGGGGTGATTCGGTGCATGGTC
| Start of BLAST Alignment: | NT 296 / Intron 1 of 4 |
| First 15 bp Perfect Match: | NT 222 / Exon 1 of 5 |
BLAST Details: Query Sequence: 117405_LB2U Length: (994 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g06960 68416.t00747 expressed protein 1601 5.7e-68 1 At2g22990 68415.t02567 sinapoylglucose:malate sinapoyltra... 198 0.93 1 At1g24265 68414.t02739 expressed protein 188 0.9995 1 >At3g06960 68416.t00747 expressed protein Length = 2337 Minus Strand HSPs: Score = 1601 (246.3 bits), Expect = 5.7e-68, P = 5.7e-68 Identities = 340/374 (90%), Positives = 341/374 (91%), Strand = Minus / Plus Query: 558 TGGGTGTAGAAATCGAGCGACGGCGGCGGAGACGACGGAGATGAACAGAATGAGATGGGT 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 TGGGTGTAGAAATCGAGCGACGGCGGCGGAGACGACGGAGATGAACAGAATGAGATGGGT 60 Query: 498 CGGAGAGGGAGACATCTGGGACCTCGATATGTCAACTCCGGTGACGCTCGAGGGCACCGC 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 CGGAGAGGGAGACATCTGGGACCTCGATATGTCAACTCCGGTGACGCTCGAGGGCACCGC 120 Query: 438 ACGAGCTGCTCCTGACGATCCTCTTCCTCTAGGTCTCTCTAGAGGCACTTCGTCTATCTC 379 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 121 ACGAGCTGTTCCTGACGATCCTCTTCCTCTAGGTCTCTCTAGAGGCACT-CGTCTATCTC 179 Query: 378 GCCCTAAGCAAGTTGAGTTCTTCCACCGATTCATGGCCTCACCTTCTCATCCCTTCCTTG 319 |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 180 GCCCTAAGCAAGTTGAGTTCTTCCACCGCTTCATGGCCTCACCT-CTCATCCCTTCCTTC 238 Query: 318 TACCCTTATCCGTCCCAACACCGGANANGGAGGCGGNGGNGGATTNTCTNTTCAAAAAGN 259 | |||| |||||||||||||||||| | |||||||| || ||||| ||| |||||| || Sbjct: 239 TCCCCT-ATCCGTCCCAACACCGGAGATGGAGGCGGTGGTGGATTCTCTCTTCAAAGAGT 297 Query: 258 CCTCNCTNTTCCNTTNTCCAACAACTGGNANACCTCCCCAAANTCAAAAATCCTAACNNN 199 |||| || |||| || |||||||||||| | ||||||||||| |||||||||||||| Sbjct: 298 CCTCACTCTTCCTTTCTCCAACAACTGGTATACCTCCCCAAATTCAAAAATCCTAACTTT 357 Query: 198 NNNNNNNNCTGAWA 185 ||||+| Sbjct: 358 TTTTTTTTCTGATA 371 >At2g22990 68415.t02567 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618 Length = 3864 Plus Strand HSPs: Score = 198 (35.8 bits), Expect = 2.7, P = 0.93 Identities = 134/225 (59%), Positives = 134/225 (59%), Strand = Plus / Plus
Border_2 (117405_LB1D)
ACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAG
TTGTCTAAGCGTCAATAAAGTTCGATAATTATTTTGTTTTTGTGAATCCCAAGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGAGATTCGGTAACG
GAGATAGATAAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTAGCTTCTCGTTTAAACACAATTGGCAAGCATTTGAAGGATAAATCTTTGTACG
CATTGGGTTTTTGTTCTGAGTTTTTGTTATCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTACAAAGGTGATCTCGATAAGAATCCTAGAGCTAA
GGCTATCTTCAATCACGAGGCAATTTCTCTGTTACCCTATTTTCAATTTCTTGACTCTGTTAATAATATTTCACTATTTGGTTGGCAATGTGATTCATTG
TTGATTTGGATCATACCAATTGGTTGCTGAGGTAATGAAGTCCGCTACACTTTGTTCTGACTCACGTCTCTATTTTTTGTTGGTTTCAGTTTCCGCTTCA
CAATCTGACAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGCCACTCTCAATGGCTATTGATCTAGCATCTCTT
CCTGCTGAATCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGAAGTGCCTCCACCGCCTG
TTCTG
| Start of BLAST Alignment: | NT 331 / Intron 1 of 4 |
| First 15 bp Perfect Match: | NT 340 / Intron 1 of 4 |
BLAST Details: Query Sequence: 117405_LB1D Length: (805 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g06960 68416.t00747 expressed protein 3384 1.7e-148 1 At4g08520 68417.t01337 clathrin adaptor complex small cha... 213 0.31 1 At1g12730 68414.t01318 cell division cycle protein-relate... 206 0.55 1 At1g26810 68414.t02934 galactosyltransferase family prote... 205 0.60 1 >At3g06960 68416.t00747 expressed protein Length = 2337 Plus Strand HSPs: Score = 3384 (513.8 bits), Expect = 1.7e-148, P = 1.7e-148 Identities = 710/738 (96%), Positives = 710/738 (96%), Strand = Plus / Plus Query: 70 ACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAAT-AAAGTTCGATAA 128 | ||| |||| ||| | | | || || | | || || | |||||||||||| Sbjct: 337 AAATTCAAAAA-TCCTAACTTTTTTTTTTTCT-GA-TACTT-TCGGTGAAAGTTCGATAA 392 Query: 129 TTATTTTGTTTTTGTGAATCCCAAGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGA 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 TTATTTTGTTTTTGTGAATCCCAAGGCTTGTGTCTCTTCTGGGCCAATTCGATGTTCAGA 452 Query: 189 GATTCGGTAACGGAGATAGATAAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTA 248 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 GATTCG-TAACGGAGATAGATAAGACTAAAGCTTTTGGTCGAGGGTCTTCGTCTACAGTA 511 Query: 249 GCTTCTCGTTTAAACACAATTGGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGT 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 GCTTCTCGTTTAAACACAATTGGCAAGCATTTGAAGGATAAATCTTTGTACGCATTGGGT 571 Query: 309 TTTTGTTCTGAGTTTTTGTTATCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTAC 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 TTTTGTTCTGAGTTTTTGTTATCACCAGATGATACTTTGCTTCTTAGCTATGATGCTTAC 631 Query: 369 AAAGGTGATCTCGATAAGAATCCTAGAGCTAAGGCTATCTTCAATCACGAGGCAATTTCT 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 AAAGGTGATCTCGATAAGAATCCTAGAGCTAAGGCTATCTTCAATCACGAGGCAATTTCT 691 Query: 429 CTGTTACCCTATTTTCAATTTCTTGACTCTGTTAATAATATTTCACTATTTGGTTGGCAA 488 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 CTGTTACCCTCTTTTCAATTTCTTGACTCTGTTAATAATATTTCACTATTTGGTTGGCAA 751 Query: 489 TGTGATTCATTGTTGATTTGGATCATACCAATTGGTTGCTGAGGTAATGAAGTCCGCTAC 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 TGTGATTCATTGTTGATTTGGATCATACCAATTGGTTGCTGAGGTAATGAAGTCCGCTAC 811 Query: 549 ACTTTGTTCTGACTCACGTCTCTATTTTTTGTTGGTTTCAGTTTCCGCTTCACAATCTGA 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 ACTTTGTTCTGACTCACGTCTCTATTTTTTGTTGGTTTCAGTTTCCGCTTCACAATCTGA 871 Query: 609 CAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGC 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 CAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAACATGGTGAATATTGGGATGTGC 931 Query: 669 CACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTGAATCTGGTCCAAGTTACCATT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 932 CACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTGAATCTGGTCCAAGTTACCATT 991 Query: 729 TATGTTTACACCATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGAAGTGC 788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 992 TATGTTTACACCATAACAGCGGATCACCCAAGAAGTTACATTCTGATACTATGGAAGTGC 1051 Query: 789 CTCCACCG-C-CTG-TTC 803 |||||||| | ||| ||| Sbjct: 1052 CTCCACCGTCACTGCTTC 1069 >At4g08520 68417.t01337 clathrin adaptor complex small chain family protein contains Pfam profile: PF01217 clathrin adaptor complex small chain Length = 3176 Plus Strand HSPs: Score = 213 (38.0 bits), Expect = 0.38, P = 0.31 Identities = 341/621 (54%), Positives = 341/621 (54%), Strand = Plus / Plus