At3g16290 SYNGENTA 117811
Genomic Sequence (from TAIR)
caaacacatacatgagtgacactgacagaccggtttccgcgtctcgattcgtttttagcgtctgggcttcttaatgccttttttagagttaaatggccta agtttttgttattgggctttaagaagcctttttatattacgattgttctgtgttctgtttcttctatccctttagcctgggaaatgatgaagctcattgc tacgttttaatggcgatcactctatctcgactagcttggtttattgcaattcacttcttcatgtaagttaaattcactctacttcaattgaatcacatcA TGGCTTGTCGTTTCCCTCTGCATTCTTCGTCACCTTCTCAATTCCTTTCACCGGAAAATCGTCAGAGACTACCCAGAAATTACCCTTCAATCTCATGCCA AAACAATTCAGCTACGAACGTTGTCCATGAAGATGGTGATGATAACGACAAAGCCAAGACAAACCAAGTCAATCTTCTCGCAATACCAATCACACTCACT ATAATCTCCGCTTCTCTAGCCAAACCGTCGTTCGCGGCTGCGAAGGTAACGGAGAGAAAGAGAACTCAGAAGAAACCTCAGGAGGCTTTGACACTTGAAC AGCTTAAAGCTTGGTCCAAAGATTTACCTGTAGTTTCGAATCGTATACCTTATACTGACATTTTGAGCTTAAAAGCTGAAGGTAAGCTTAAGCATGTGAT AAAGCCTCCTAATTTAAGTTTGCGGCAAAAGGCAGAGCCTGTGTTAGTAGTTTTGGAGGATTCTAGAGTATTAAGGACTGTGTTGCCTTCTTTAGAGGGT AATAAGAGGTTTTGGGAACAATGGGATGAGTTAGGGATTGATGTACAATGTGTTAATGCTTATACTCCTCCGGTTAAGAGACCTCCTGTGCCGTCTCCTT ATTTAGGATTTTTGTGGAAAGTTCCTGCTTATATGTTAACATGGGTTAAGCCAAAGAAGGAGTCTAAACGTGCTGCTGAGTTGAAGAGAATGAGGGAGGA TTTCAAGAGGCAGAGGAAGGAGGAGATTGAGACGATGAAAGAGGAAAGAGTGATGATGGAAAAGACAATGAAGGCGCAGAAGAAACAACAGGAGAGGAAG AAAAGGAAGGCTGTTAGGAAGAAGAAATACGAGGAGTCTCTGCGTGAGGCGAGGAAAAATTATCGAGATATGGCGGATATGTGGGCAAGATTGGCTCAGG ATCCTAATGTGGCTACTGCTCTTGGATTGGTATTCTTTTATATATTTTACCGTGTGGTGGTTCTCAACTATAGGAAGCAAAAGAAGGATTATGAAGACAG GTTGAAGATTGAGAAGGCGGAAGCAGATGAGAGGAAGAAAATGAGGGAGTTGGAAAGGGAGATGGAGGGAATTGAGGAAGAGGATGAGGAGGTTGAGGAA GGTACAGGTGAGAAAAATCCTTACTTACAGATGGCGATGCAGTTCATGAAGTCAGGTGCACGTGTGAGACGAGCATCAAATAAGAGGTTACCTGAGTATC TTGAGAGAGGTGTGGATGTCAAATTTACAGATGTTGCTGGACTTGGGAAGATTCGTCTTGAACTTGAGGAAATCGTTAAGTTTTTTACTCATGGAGAGAT GTACCGCAGGAGAGGGGTCAAGATTCCAGgttgaatgttgtgaaaacttctgtttttccttatatcacctagtatttgatgttaagttatatgatctatg aaattctgctgtttgatcatttctttaattttgttttcgtttagGTGGTATTCTTTTATGTGGGCCTCCTGGGGTCGGAAAAACTTTACTGGCAAAAGCT GTAGCTGGTGAAGCAGGAGTCAATTTCTTCTCTATCTCTGCTTCTCAGTTTGTGGAAATATATGTTGGTGTTGGTGCATCTCGTGTCCGAGCATTATACC AAGAAGCTAGAGAAAATgtaagtctaataactttctatacctgtgttgatcgtagaacttaattctcacttttggatgcttctgagatcattcaagcagt acctcttggcttcttttctgttgattctcattgttatagtgaggatttagtctattactggatgttaattttaaggtggtctcactgcagGCTCCATCTG TGGTCTTCATTGATGAATTGGATGCTGTTGGAAGGGAGCGTGGGTTAATAAAGGGTTCTGGAGGACAAGAAAGGGATGCCACTCTTAATCAGgttccaga catttcagattgtgtaatagttttcttcgttatataacgggatggtaattttattc►atttttttgtgt◄cccagC◄TACTTG►TTTCTTTAGATGGTTT TGAAGGAAGGGGAGAGGTCATCACCATTGCTTCCACAAACAGACCAGACATTCTCGATCCTGCGCTTGTGAGGCCTGGACGGTTCGACCGCAAAATCTTT ATCCCTAAACCTGGTCTTATTGGACGGATGGAAATTCTGCAGgtaacggcgtggtatctgtgtttatgtattcttaaacttgtaaatttgcaacaaaaaa aaaagaggttaaaagtagagttttgtcctcggtccaaatttatatttttgttttggttttgctgtttagGTTCATGCTCGTAAGAAGCCGATGGCTGAAG ATTTAGACTATATGGCAGTTGCTAGCATGACAGATGGCATGGTTGGAGCAGAGCTTGCTAATATTGTTGAGATCGCGGCAATTAATATGATGCGTGATGG AAGAACAGAGgtgggatcaatatttttagttcaaattagttatatctgctcttgttttttggatgggtttggtttcaaatgttaggatcgtgtagcatct ggtaatatggtgtgtgtgaattaaattaagtgattggatgttgtgctcgataggaagcttaggctaatattaagtttagaagtctatttttgattccagc aagtaaaagactgagaaatcatctatattctgtaactctaatgcagTTAACAACAGATGATTTGCTTCAAGCTGCACAAATAGAAGAAAGAGGAATGTTA GATAGAAAAGACAGGAGCTTGGAGACATGGCGACAAGTTGCGATCAATGAAGCTGCAATGGCTGTTGTAGCAGTGAACTTTCCTGATATGAAGAATATAG AATTTgtaggtttcttaaatctcttttccccttcatacattgaatgaagcttcaactttctgttttaccgcaccgtgacatttcgatgaccttgaccagC TGACAATCAACCCTAGAGCTGGTAGAGAATTGGGTTATGTCCGGGTGAAGATGGATCATATCAAATTTAAGGAAGGCATGCTTAGgtttgtggctttcat catacagatttactttcatgattacacgggttctttatgttaatctatatgtcctttggtggtctactatatgtagTCGACAATCCATCTTGGATCACAT CACTGTTCAGTTAGCACCCCGTGCTGCAGATGAACTATGGTACGGTGAGGATCAGgtgagagatatgatatatcattttactcttctctaataactgtgg tcatatttttttttagtttaccaacctttgctaatgatttgttacagTTAAGCACGATATGGGCTGAAACATCGGATAACGCAAGATCAGCTGCTCGATC ATTGGTTCTTGGTGGTCTTTCTGATAAGCATCATGGCTTGAATAACTTCTGGGTAGCTGATCGAATTAACgtaaggccatatcttgacattgttttcact tcagttttcagagaacagatatcatcttctgatacatggatttgcagGATATTGATGTGGAGGCATTGCGGATATTGAACATGTGTTACGAGCGTGCTAA AGAGgtaaagtagacttctaaatcaactacatctatatcatagcatctcctttatattggtcttgttaaatatatatttacaaacgcatacaccagATTC TTGGAAGAAACAGGACGCTCATGGACGAGGTGGTAGAGAAACTGGTTCAAAAGAAAAGTCTAACGAAACAAGAATTCTTCACTCTTGTTGAGCTCTATGG GTCCAGTAAACCAATGCCACCGAGTATCCTTGAACTTAGGAAGATCAAACGGCTTGAGCTAGAAGAGATGGTGCTGAAACTGGACATGACTACCGCAAGA AACAGTTCATAAgatgattgtaatttggagaaaagagacagttcgtgacaatcgtagggaataaacatcaaaaacccattatagagacaatgaggttgat cctttatctatatttcctctgtaatctttgtaatagtacatgttagataattctttgagcttcaatatagtataacacttctttttatccatattgaagc aatagtcaattttaaattgtttcacatatcttgaaaaaaggattatgaatttttatgtcatgaacttatgtggagcatgtggattattttaatttgctat atataaaaattggaagacattgaacaatgggcacatgctaatccatgatttttctttttgttaggtatttaggtgaaattgcaaattgatgagaatcaaa tcaa
Border_1 (117811_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGCGCTTGTACACAAAAAAATGAATAAAATTACCATCCCGTTATATAACGAAGAAAACTATTACACAATCTGAAATGTCTGGAACCTGATTAAGAGTG
GCATCCCTTTCTTGTCCTCCAGAACCCTTTATTAACCCACGCTCCCTTCCAACAGCATCCAATTCATCTC
| Start of BLAST Alignment: | NT 1975 / Exon 4 of 11 |
| First 15 bp Perfect Match: | NT 1969 / Intron 3 of 10 |
BLAST Details: Query Sequence: 117811_LB1 Length: (370 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g16290 68416.t01829 FtsH protease, putative contains s... 797 2.6e-30 1 At5g28415 68418.t03144 copia-like retrotransposon family ... 169 0.999 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 167 0.9995 1 >At3g16290 68416.t01829 FtsH protease, putative contains similarity to cell division protein FtsH GI:1652085 from [Synechocystis sp. PCC 6803] Length = 3809 Minus Strand HSPs: Score = 797 (125.6 bits), Expect = 2.6e-30, P = 2.6e-30 Identities = 161/163 (98%), Positives = 161/163 (98%), Strand = Minus / Plus Query: 368 GATGAATTGGATGCTGTTGGAAGGGAGCGTGGGTTAATAAAGGGTTCTGGAGGACAAGAA 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1813 GATGAATTGGATGCTGTTGGAAGGGAGCGTGGGTTAATAAAGGGTTCTGGAGGACAAGAA 1872 Query: 308 AGGGATGCCACTCTTAATCAGGTTCCAGACATTTCAGATTGTGTAATAGTTTTCTTCGTT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1873 AGGGATGCCACTCTTAATCAGGTTCCAGACATTTCAGATTGTGTAATAGTTTTCTTCGTT 1932 Query: 248 ATATAACGGGATGGTAATTTTATTCATTTTTTTGTGTACAAGC 206 ||||||||||||||||||||||||||||||||||||| | ||| Sbjct: 1933 ATATAACGGGATGGTAATTTTATTCATTTTTTTGTGTCCCAGC 1975 >At5g28415 68418.t03144 copia-like retrotransposon family has a 1.2e-302 P-value blast match to dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] (AtRE1) (Ty1_Copia-element) Length = 4427 Plus Strand HSPs: Score = 169 (31.4 bits), Expect = 6.9, P = 0.999 Identities = 119/197 (60%), Positives = 119/197 (60%), Strand = Plus / Plus
Border_2 (117811_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTTCTGCGCAATTTTA
TTCATTTCTTTAGATGGTTTTGAAGGAAGGGGAGAGGTCATCACCATTGCTTCCACAAACAGACCAGACATTCTCGATCCTGCGCTTGTGAGGCCTGGAC
GGTTCGACCGCAAAATCTTTATCCCTAAACCTGGTCTTATTGGACGGATGGAAATTCTGCAGGTAACGGCGTGGTATCTGTGTTTATGTATTCTTAAACT
TGTAAATTTGCAACAAAAAAAAAAGAGGTTAAAAGTAGAGTTTTGTCCTCGGTCCAAATTTATATTTTTGTTTTGGTTTTGCTGTTTAGGTTCATGCTCG
TAAGAAGCCGATGGCTGAAGATTTAGACTATATGGCAGTTGCTAGCATGACAGATGGCATGGTTGGAGCAGAGCTTGCTAATATTGTTGAGATCGCGGCA
ATTAATATGATGCGTGATGGAAGAACAGAGGTGGGATCAATATTTTTAGTTCAAATTAGTTATATCTGCTCTTGTTTTTTGGATGGGTTTGGTTTCAAAT
GTTAGGATCGTGTAGCATCTGGTAATATGGTGTGTGTGAATTAAATTAAGTGATTGGATGTTGTGCTCGATAGGAAGCTTAGGCTAATATTAAGTT
| Start of BLAST Alignment: | NT 1957 / Intron 3 of 10 |
| First 15 bp Perfect Match: | NT 1981 / Exon 4 of 11 |
BLAST Details: Query Sequence: 117811_LB2 Length: (796 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g16290 68416.t01829 FtsH protease, putative contains s... 2909 2.9e-127 1 At1g50250 68414.t05156 cell division protein ftsH homolog... 224 9.3e-06 2 At3g53230 68416.t05452 cell division cycle protein 48, pu... 260 0.0021 1 At2g30950 68415.t03501 FtsH protease (VAR2) identical to ... 250 0.0062 1 >At3g16290 68416.t01829 FtsH protease, putative contains similarity to cell division protein FtsH GI:1652085 from [Synechocystis sp. PCC 6803] Length = 3809 Plus Strand HSPs: Score = 2909 (442.5 bits), Expect = 2.9e-127, P = 2.9e-127 Identities = 597/618 (96%), Positives = 597/618 (96%), Strand = Plus / Plus Query: 179 ATTTGTTTTCTGCGCAATTTTATTCATTTCTTTAGATGGTTTTGAAGGAAGGGGAGAGGT 238 |||| |||| || | | | || |||||||||||||||||||||||||||||||||| Sbjct: 1958 ATTT-TTTTGTGTCCCAGCTACTTG-TTTCTTTAGATGGTTTTGAAGGAAGGGGAGAGGT 2015 Query: 239 CATCACCATTGCTTCCACAAACAGACCAGACATTCTCGATCCTGCGCTTGTGAGGCCTGG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2016 CATCACCATTGCTTCCACAAACAGACCAGACATTCTCGATCCTGCGCTTGTGAGGCCTGG 2075 Query: 299 ACGGTTCGACCGCAAAATCTTTATCCCTAAACCTGGTCTTATTGGACGGATGGAAATTCT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2076 ACGGTTCGACCGCAAAATCTTTATCCCTAAACCTGGTCTTATTGGACGGATGGAAATTCT 2135 Query: 359 GCAGGTAACGGCGTGGTATCTGTGTTTATGTATTCTTAAACTTGTAAATTTGCAACNNNN 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2136 GCAGGTAACGGCGTGGTATCTGTGTTTATGTATTCTTAAACTTGTAAATTTGCAACAAAA 2195 Query: 419 NNNNNNGAGGTTAAAAGTAGAGTTTTGTCCTCGGTCCAAATTTATATTTTTGTTTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2196 AAAAAAGAGGTTAAAAGTAGAGTTTTGTCCTCGGTCCAAATTTATATTTTTGTTTTGGTT 2255 Query: 479 TTGCTGTTTAGGTTCATGCTCGTAAGAAGCCGATGGCTGAAGATTTAGACTATATGGCAG 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2256 TTGCTGTTTAGGTTCATGCTCGTAAGAAGCCGATGGCTGAAGATTTAGACTATATGGCAG 2315 Query: 539 TTGCTAGCATGACAGATGGCATGGTTGGAGCAGAGCTTGCTAATATTGTTGAGATCGCGG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2316 TTGCTAGCATGACAGATGGCATGGTTGGAGCAGAGCTTGCTAATATTGTTGAGATCGCGG 2375 Query: 599 CAATTAATATGATGCGTGATGGAAGAACAGAGGTGGGATCAATATTTTTAGTTCAAATTA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2376 CAATTAATATGATGCGTGATGGAAGAACAGAGGTGGGATCAATATTTTTAGTTCAAATTA 2435 Query: 659 GTTATATCTGCTCTTGTTTTTTGGATGGGTTTGGTTTCAAATGTTAGGATCGTGTAGCAT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2436 GTTATATCTGCTCTTGTTTTTTGGATGGGTTTGGTTTCAAATGTTAGGATCGTGTAGCAT 2495 Query: 719 CTGGTAATATGGTGTGTGTGAATTAAATTAAGTGATTGGATGTTGTGCTCGATAGGAAGC 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2496 CTGGTAATATGGTGTGTGTGAATTAAATTAAGTGATTGGATGTTGTGCTCGATAGGAAGC 2555 Query: 779 TTAGGCTAATATTAAGTT 796 |||||||||||||||||| Sbjct: 2556 TTAGGCTAATATTAAGTT 2573 >At1g50250 68414.t05156 cell division protein ftsH homolog 1, chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell division protein ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) [Arabidopsis thaliana] Length = 2855 Plus Strand HSPs: Score = 224 (39.7 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06 Identities = 136/223 (60%), Positives = 136/223 (60%), Strand = Plus / Plus