At5g63050 SYNGENTA 11833
Genomic Sequence (from TAIR)
cacaaccccttttaagtccaatgaaatcaagttgttagttaattcattgtgaaactagagattcaagttttggttccttcaaagatattcgatataaaag agaggacttcaagttttgagaacgtaattacatgtttcacgtcgtggttttcaaaaaaatgattataagaaatgttattttcgtgttgattgtatgattt gaagaaacaaaacatcatgtaaatctaaatgtaaagagcttttttatcttgaaaaaagttgataaaaaagttgtgaaagttctattcaaatgattttttt ttttgttaagactatgttcttcaactcgttatttgactatttaaaatagaaaatcaattgtgatttaataaaaaaaaaaacttaatagtaatttctccga aacgacgacgtttagaggtgttggtattaaaaaacctttgattaaccgcttgcctgcaatctgctctcctatctcttccaatctcctctcctctctatct atccgcgtccccatttcttcttccctctaaaattccaatctttcttattgcttttttttattcaaagcttcaagattttcactagggttctttccctttc tcttattcgataaattctgttcttttctttcgtattctcacggacgaacaaaccccaaggcaacgagctcatgattgaggtccgttcttctgctctttcc ctctcagtttcttcgcagctgttttctaatttgcaatctattttatggatttggggtacttttgttaagggaacaaaacctatcattttccaggtttctt atggttgcgctttagattttatagtttagtgtaatttaatctgatttggggaattgggtgttggataagagtgttttgcagctgagaggattgaaaaatt gaatatttatgatatttaagctcgctaatgaggttctcttacttcggattttgctcagcttcgctcctgtcaagtaatttttgttgtgatctatatatga aatttccttttaatgttttatggtcgctacttgtgatttcatcatctttggaggttacaatcatcttattcaatcctttcttcggcctcagattgtggct tttgagtaaatgattcactgctcagctagagacaATGGTGTTGGTAACCCATAAATTGCAGgtatcttagacatagatctgtaaagtcctaaattctact ttgttttgtgtctctgtaatggtcatgtctgcaaatggttgtaccttccgtttcactcttgtaaagccttcttttacttgccacactagaaatatagatg tttacctcccccttgttctctcatgtagGGTTCACATGTCTTGTCTCCT►TGGAGTTCGCCAACATGGAC◄CAGAGGCTTGTGTTTAAAGAGACCTGTTA CGACAGTGCACT►TTGTTGA◄GAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGgtgagtatcccactttacaaatccctgcttaggt tatgtactacttagtttgagactcattactctctctgtacgactgtactctaggaaggtagatacgtagttatattgtggattaaaatgtgcctcttaat acgctgagacctatctgttagctaagagattccttgttagatactgagacgtatgaacatataggaaactatactaaaaagttatagttcatatattccc tttgcaattgattctcggaatcataatatgttgtgaaactcttttgcagTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTAC ATCTTTTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAATAACTCTGTCAAACTATCTTACCGTTCAGATGAT GACGAAAATAATGTGAATGGCTCCCCAAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGCAACCCGCTATTCAGA AACTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTATTCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCA AGAAACTGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCTGGTTTTGGAGTCTAGACGCAGCTATCAAGATTCCG TTGCTGTTATTgtaagtatcagcatcaaagcatctttttcttttgcttgatgaggtagtctagagttagttatcaatagaggaaaatcgactagatgtga acttatattcaaaaactgtccttaggaagatttaagagtgtcacagccacttttttcttttccaagttccttgtatgtgtattgactatactttcacctt gaccttttttgtagTGTTCCAGCTTTCCTAGCTGTTTACGCGATCTGTGGTGCTGAAGTTACAAAGGAATTATCCCCTATGTGGGTGGTTGGCCCCTTGA TCATCGCCCTTTATATAAAAATGTTCCAAGGACTATGTTCCCTTTACGCCTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACCTACCATCGTATTA TCTTGTAGCATACCAATACATTGCCGATGGAAAGCTCAAAGACGACGTTAAAGCTCTAGTGTTTAAACCAGTGGTGGCCATCAAGAACACAGACTACAAA GAGCTCACACGCACGAAGCTGAAACAGTTCCAAGAATGGATCATTGAGAAATACCTGGATTTTGTTGAATCTGTATGGCCTTATTACTGCAGAACTATCA GATTCCTGAAGAGGGCTAACCTGATTTGAagatcttcaacatggaaccctcaaattctgacttctcagggcttctctatgatttctctctgtgctttgtt tacctttttttttttttttcttaattttaggaaggcttttcatgttgtttgttcttatctctatgtatactgataccttttttgaggttttacaatgagt tcttttaatattaagggttatcccttttctccatacttaaaaattatctatacacatataaatcgacaacaacagaagaaataagtgcttaaaggtctct tataaacctctTTAGCTCCGGAAATTTGATGGTAATGTTTCTTCAGTAAAGTACTCCTTTCTGACGGTCTCTGCTGAGCAAAACTTGACcttcacataaa gcaaagtataaaaatccatctagtccagtcctctgaataaccacactatgtagtatatagcaattagaatcgatgcataaaaacatagcaatatggtatg gaag
Border_1 (11833_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTGCACTGTCCATGTTGG
CGAACTCCAAGGAGACAAGACATGTGAACCCTACATGAGAGAACAAGGGGGAGGTAAACATCTATATTTCTAGTGTGGCAAGTAAAAGAAGGCTTTACAA
GAGTGAAACGGAAGGTACAACCATTTGCAGACATGACCATTACAGAGACACAAAACAAAGTAGAATTTAGGACTTTACAGATCTATGTCTAAGATACCTG
CAATTTATGGGTTACCAACACCATTGTCTCTAGCTGAGCAGTGAATCATTTACTCAAAAGCCACAATCTGAGGCCGAAGAAAGGATTGAATAAGATGATT
GTAACCTCCAAAGATGATGAAATCACAAGTAGCGACCATAAAACATTAAAAGGAAATTTCATATATAGATCACAACAAAAATTACTTGACAGGAGC
| Start of BLAST Alignment: | NT 283 / Exon 3 of 5 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 235 / Exon 3 of 5 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 11833_LB Length: (596 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 2040 7.7e-88 1 At5g57015 68418.t06605 casein kinase, putative similar to... 213 0.18 1 At1g43830 68414.t04610 gypsy-like retrotransposon family ... 202 0.50 1 At4g02220 68417.t00274 zinc finger (MYND type) family pro... 200 0.56 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Minus Strand HSPs: Score = 2040 (312.1 bits), Expect = 7.7e-88, P = 7.7e-88 Identities = 438/462 (94%), Positives = 438/462 (94%), Strand = Minus / Plus Query: 596 GCTCCTGTCAAGTAATTTTTGTTGTGATCTATATATGAAATTTCCTTTTAATGTTTTATG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 GCTCCTGTCAAGTAATTTTTGTTGTGATCTATATATGAAATTTCCTTTTAATGTTTTATG 562 Query: 536 GTCGCTACTTGTGATTTCATCATCTTTGGAGGTTACAATCATCTTATTCAATCCTTTCTT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 GTCGCTACTTGTGATTTCATCATCTTTGGAGGTTACAATCATCTTATTCAATCCTTTCTT 622 Query: 476 CGGCCTCAGATTGTGGCTTTTGAGTAAATGATTCACTGCTCAGCTAGAGACAATGGTGTT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 CGGCCTCAGATTGTGGCTTTTGAGTAAATGATTCACTGCTCAGCTAGAGACAATGGTGTT 682 Query: 416 GGTAACCCATAAATTGCAGGTATCTTAGACATAGATCTGTAAAGTCCTAAATTCTACTTT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 683 GGTAACCCATAAATTGCAGGTATCTTAGACATAGATCTGTAAAGTCCTAAATTCTACTTT 742 Query: 356 GTTTTGTGTCTCTGTAATGGTCATGTCTGCAAATGGTTGTACCTTCCGTTTCACTCTTGT 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 743 GTTTTGTGTCTCTGTAATGGTCATGTCTGCAAATGGTTGTACCTTCCGTTTCACTCTTGT 802 Query: 296 AAAGCCTTCTTTTACTTGCCACACTAGAAATATAGATGTTTACCTCCCCCTTGTTCTCTC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 803 AAAGCCTTCTTTTACTTGCCACACTAGAAATATAGATGTTTACCTCCCCCTTGTTCTCTC 862 Query: 236 ATGTAGGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGAC-AGTGCACAAATT 178 ||||||||||||||||||||||||||||||||||||||||||||||| || | | || Sbjct: 863 ATGTAGGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGG-C---TT 918 Query: 177 GACGCTTAGACA-ACTTAATAACACATTGCGGACGTTTTTAA 137 | | ||| | | || | || ||| ||| || || || | Sbjct: 919 GT-GTTTAAAGAGACCTGTTACGACAGTGC--ACTTTGTTGA 957 >At5g57015 68418.t06605 casein kinase, putative similar to casein kinase I, delta isoform [Arabidopsis thaliana] SWISS-PROT:P42158; contains protein kinase domain, Pfam:PF00069 Length = 3747 Minus Strand HSPs: Score = 213 (38.0 bits), Expect = 0.20, P = 0.18 Identities = 151/255 (59%), Positives = 151/255 (59%), Strand = Minus / Plus
Border_2 (11833_RB)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGTGTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGGTGTTTTAGGTGAGTATCCCACTTTACAAATCCCTGCTTAGGTTATGTACT
ACTTAGTTTGAGACTCATTACTCTCTCTGTACGACTGTACTCTAGGAAGGTAGATACGTAGTTATATTGTGGATTAAAATGTGCCTCTTAATACGCTGAG
ACCTATCTGTTAGCTAAGAGATTCCTTGTTAGATACTGAGACGTATGAACATATAGGAAACTATACTAAAAAGTTATAGTTCATATATTCCCTTTGCAAT
TGATTCTCGGAATCATAATATGTTGTGAAACTCTTTTGCGGTTTACGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTTTA
AAGG
| Start of BLAST Alignment: | NT 215 / Exon 3 of 5 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 276 / Exon 3 of 5 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 11833_RB Length: (604 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 1987 1.9e-85 1 At1g42852 68414.t04507 hAT-like transposase family (hobo/... 194 0.80 1 At1g14180 68414.t01501 expressed protein 184 0.992 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Plus Strand HSPs: Score = 1987 (304.2 bits), Expect = 1.9e-85, P = 1.9e-85 Identities = 433/464 (93%), Positives = 433/464 (93%), Strand = Plus / Plus Query: 145 TGGAGCTCGCTTGAGCTTGGATCAGA---TTGTCGTTTCCCGCCTTCAGTTTAAACTAT- 200 ||||| |||| | | |||| |||| |||| |||| | | ||| || | Sbjct: 890 TGGAGTTCGCCA-A-CATGGACCAGAGGCTTGT-GTTTAAAGAGACCTGTTACGACAGTG 946 Query: 201 CAGTGTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGGTGTTTTAGGT 260 || | ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 947 CACT--TTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGGT 1004 Query: 261 GAGTATCCCACTTTACAAATCCCTGCTTAGGTTATGTACTACTTAGTTTGAGACTCATTA 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1005 GAGTATCCCACTTTACAAATCCCTGCTTAGGTTATGTACTACTTAGTTTGAGACTCATTA 1064 Query: 321 CTCTCTCTGTACGACTGTACTCTAGGAAGGTAGATACGTAGTTATATTGTGGATTAAAAT 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1065 CTCTCTCTGTACGACTGTACTCTAGGAAGGTAGATACGTAGTTATATTGTGGATTAAAAT 1124 Query: 381 GTGCCTCTTAATACGCTGAGACCTATCTGTTAGCTAAGAGATTCCTTGTTAGATACTGAG 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 GTGCCTCTTAATACGCTGAGACCTATCTGTTAGCTAAGAGATTCCTTGTTAGATACTGAG 1184 Query: 441 ACGTATGAACATATAGGAAACTATACTAAAAAGTTATAGTTCATATATTCCCTTTGCAAT 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 ACGTATGAACATATAGGAAACTATACTAAAAAGTTATAGTTCATATATTCCCTTTGCAAT 1244 Query: 501 TGATTCTCGGAATCATAATATGTTGTGAAACTCTTTTGCGGTTTACGGTCCCCTTGCAAC 560 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1245 TGATTCTCGGAATCATAATATGTTGTGAAACTCTTTTGCAGTTTAGGGTCCCCTTGCAAC 1304 Query: 561 GGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTTTAAAGG 604 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 GGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTTTAAAGG 1348 >At1g42852 68414.t04507 hAT-like transposase family (hobo/Ac/Tam3) has a 2.4e-64 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) [Arabidopsis thaliana] Length = 2423 Plus Strand HSPs: Score = 194 (35.2 bits), Expect = 1.6, P = 0.80 Identities = 166/286 (58%), Positives = 166/286 (58%), Strand = Plus / Plus