At5g37630 SYNGENTA 119013
Genomic Sequence (from TAIR)
gtttaaatttgtttcaacagacaaaacgagctgcaatgaagaacgttgttttgttctaacataggagataaacgagacattaacgccgtaaaaaaattct gttaacctacttaacgacatgactcaaatgacaactcaacaaaaactttgtcatttattttgaaaaacaacaaaaactatacgatttatttgtcttccgt agagttcaagattaaatcgtcccaaatttgaaagttcgtaatttgtttgacatttttcccatttaattttcaaaacaagaatatcaaatattttcccgct catagaaaattttgaaataggtgaaagaaacaaaacagatctaactctcacacactctcacaagagcgtcaattcgaaaaattcaccaaacattttcggt ttctcttcacaaaaaatctcaaatttctctgtgaaaATGGGCGAAGAATCAGAAATCGCCATGGCTTCAGCAGATCGAAATAACCTAACCCAGAAAATCG CCAAGATCCTAAACGAGACTCGCACATCATACGCTACTCATAACCGTAAGCTAAAGGAGCTCGCCACAATCCGTTCAAAACTATCTTCATCTGAATCCGA ATCCGAGTCCGTGTCTTCTTCTATTCTTCAATTCTCTTCCGTGTTTCTCAAAACCCTAACCCCTCTTTTCATCGCGGCTCAACGAAGAACCGCTGCAGCA GAGCGTGTTGTTCGATTCGTGGCGGAATTCGCTTGTCTTCGTAGTAATTCAGACGGTGACTCCGATTGCGACGAGTTTCTAGAGGAATTTCTTAAGTTTT TGGTTGCTGGGTCTGTTGCTGCCAATAGAAACGCGAGATTCAGGGCGTGTCAGATAATTTCAGAGgtataagagaataattagggttctttctccttcaa tttaatcggtaaatgtctgttaggtcaaatataggtttaattcaactgttcattgtgtttgttacagATCATATTGAGGCTGCCAGATGAAGTGGAAGTA GCGGATGAACTATGGGATGATGTAATTGATTGTATGATGTTGCGAGTTCGGGACAAAGTTCCTGTTATACGTACATTTGCTGTGAGGTCTCTTTCACGTT TTGTGAATGATCCTGAGAATAGTGACATTCTTGATTTGCTACTTGAGGTGCTTCCTTTGGAACAGAATCCGgtaaagtttctatcttttaccatttctgc tttgacatcataaattacattctgatatttgtcatcaatgcttgccaaagtcttattgttgatgtttttattgtttacagGAGGTACGCAAAACAATTGT TTTATCTCTGCCTCCTTCAAATGCAACCACCCAAGCAATTATTGATTGCACGCTCGATGTTAATGAATCAGTACGCAAAGCAGCTTACTCTGTTCTGGCT AATAAAGTTCCTCTTCAGAGTCTGAGgtgaatttgggcttagagttttggt◄ctatttatttctttcttcttcattgacctcttaatagaagttttttgc tattttt◄gttagttacaactgttctacaacttccctactgtccttctctttctcctgactgggtatttctttcatttccct►gctttagCATCAAGCTA AGGACCACAATTCTTCAGAGAGGGCTCGCTGATCGTGCTGTAAATGTTTCAACGGAATGCTTGAAGCTAATGAAAGAGCAATGGCTAGCTAACTATTGTG AAGGAGATCCTATCACATTTCTTAAATACCTTGACGTTGAAACCTACGAATCTGTGGCAGAATCGGCGTTGGAAGTTCTGTTGAGTGAAGGGTTGATAAT GCCCTCCGATGATAAAAGCATCCAGCAGTACATATTGTCAGCAGATGGTGAAACTAGAGgtttgttgaagtctggacaataaatgcaatgcataagtttg cagattctgcatgtgcttatattttcttatacctgtgttagATGAAAGCACATGTTCTGCACCCAGCATTCAACTTATGGAGCCAGAGATTGCTCTTTAC TGGAGGATTATATGCAGGAAGGTGCACCAAAGTGCTCAAgtaagttttcagtttaccaactattcattgctgatgttagttactttatgcttcaaacaag gtttttgtgaatccataagttctgaaaatttccctatttagcttagttagataatagtgtgcttaaaattggtttatcgatgctcttgatgaattcccta acttagtgcttgattcacaaaccagagaatgcttatatctactagctttatattggtcgttgacactctcaatataattttttgtgatgatttttattaa acctagctggtcaccagttcttaagaccagtataaaaaggtgatcgtattcgagatccccaaccactatagcatgtcctgtgatttcaagttacaccttt actgcagtctgcagcaaatttttttctatttttttttattcactcatatctcaaacaaaactaggttacatagatcaatgcatctgagtaggcagcacat tactactgtcaaaatactaaaacacctattgtcagtttacttcactttttcttgtattgaatagccttttgtttgagaacacaaatatgtcctttagctt gtccctggattcactcaaatattgtctactatacaggctagcatttgaaatataaatcttggatcttgtaatgttttctaatgctcttagtgttggtttt acatatgggacaccggacatgctaagaatatgagactgttacgcagGCAAAAGGTTCTGATGCTGCTACAGCGATGGGTGCTGAAGCAGCAGTTTATGCT GCTGAAGCTTCAGATGCTAATGATTTGCTGGAAAGAATTCTTCCTGCAACAGTTTCTGATTATGTTGATCTAGTTAAAGCTCATATAGAAGCAGgtgagc ccagatattgtttctcatacgaaaacttaagttgtttttgtttgggagatactcatataatgttttcagGACCAAATCATCACTTTGCTTCGAGGCAGCT ATTATTGTTGGGTACGATGCTTGATTTCTCTGATGCTATGCTCCACAAGACTGTGAGCTCATTTGTCCAGGAGCTGCTCCGCAGACCTTTTGAGCAAGAA TTAGATGAAGATGGGAACAGTATTGTGATTGGAGATGGTATAAACCTTGGTGGTGATAAAGATTGGGCTGAGGCAGTGTCGAAATTGGCTAAAAAAGTCC ATGCTGCCCCTGGAGAATATGAAGAAGTTATACTTGTTGTTGTTGAAGAAGTAGCGAGACCCTGCAGGGAAAGGACTGCGGATTTCCTGCAGTGGATGCA CATGCTTTCTCTGACAAGTCTTCTCTTGGAAAATGGAAAATCTTTACATTCACTGCAAGGGAAGGCTATTGAACCAGAAGAGATATTGCATGCTCTATTG CTTCCAGGGgtaaattttctactctcctctgtttattttctactgcttaggcgccacttgttagattagataaatttgttgagactttgagttcttctta caatcttacttgtataaagcagcttttttgtcattgccaatttcactttaaaatgctgatattccatatgatctctgcatccttttgtttcatcgaaaaa ctgtcagaagatgtttacagttttaaggagtggagttatgtagctaagaaacagcttatcatgcagttgaatgccttttgcattaaaatctgggcatgat tttcgtggactcatgcaaaacaagcactctttctgatatgattcatgtcatgcagGCAAAACACACTCACTTGGATGTGCAGAGGATTGCTATAAAGGGC CTTGGTCTTTTTGGTTTGTTAGAGAAGAAGCCTAGCGAAGAGCTAGTAAGGCAGCTACGTGCAGCTTTTTGCAGAAGCCCTCCTCCAATTAGTATTATGG CTTGCAAGGCACTAGTGGATCTTGGGATGTGGCATAGCCCAACTGAAGTTGACAAGGCAATGGGACAAGATCTCTTGTCACAATTTGAGGATGACAGCAT TGATTTTGCACCCATCGACTTATCCAATGCCGAAGAAGATATGAACTTTAAAATGCTCGATCTCTTGTATGCTGGACTTGAAAGTGATGACTGGAGAGCA TCCACAGAGAGCAGTGAGAATGAGTCAGTTAAAGCAACTGTTGGGGAGGGGTTTGCAAAACTTCTTCTTCTAGGAGAGAAGTACCCAAACTTGCCTGCAT CTTTCTATCCGTTTGTATTGGGAAAGCTAATTGCTTTATATTTCAGTGAGGAGTCAAAAGAACAACTGAGgtatagagattttgtttctttcgattgcta acttctgtcaccagagtactagtaatgatttggtcttttaataatgtccagGTTTAAACAGTGTTTATCCGTCTTCTTTGAGCACTATGCCTCCCTCTCA GAAAAACATAAGgtaacggaaaccatgatgtctataagagcaataggttaacagtgtttcatggcgtatttgtataacactgctttcatgcaatgtagGG ATACGTGTCAAAGGCTTTTGTTCCTCTTGTACGCTCAATGTGGCCTGGGATTGATGGAAACACTAAAAGTTCGTCATATGTTGTATCAAATCAACGCAAG CGCGCAGTCCAAGTATCCAGATTCATCCTACAGATGATGCAAACCCCGCTATACAAAAAAGAGACAAGAGGTGAGCCTGAAAGCCAGGTCAATAAATCAC CAGAAGATTCTATCCAACATCCACTAAACTGTACAGAAGAAGGTTTGGCCATACGCATAGCCATCGAGgttagttgcattccttaactactataacatat tgttctcaggattaggaactgcggtctgtaatactggctaaccaatattgttaacctctttgctaatattgtttgtaatagATGCTAAGCTTCAAAGAAA AGAAGACTGCTCATGAGAAGGCATATGTTGCAGCGCTGTGCAAAATACTTGTGCTGCTCCATCTGAAACCATCAGAACAAAATGTGACAAAGTTGTTGAA AAAGCTTTTAAGCCTACTCGCAGATTCTGTACGTTCAGAGAAGGATCTTCTTAAAGAAGTGAAACCGGTGCTTCAACATCTAAAATCTTTGGATGCTTGT CCAAGCGAGGAGCTTACACAAGATCAAGCAAATTCCATCTTTGgtacattgatctcttgccttgtacattacagtttggttatatttacacgtaaaacta agttattcgagttgttatgctttggagaatttgactgttagtttctttctaatggctaattacagAAATACTCGGAGTTAGCTACAACTTAGAGATCACT GAAACTACAACAGTGCCACAGACACCTGCTCCTTGCTCAACAAAACCAGCTCGGTCAAGAAGACGAGCAAGGATTGAAGAAACATCCTCTGATGAAGAAG AAGTAGCATCTCCTCCACCTTCTGCTCCTAATACTTTGATGACCCGATCACACCGTGCAAGTAAAGCTGCTGCCTTGGCCAAAATAATGGCAAGCAAAGT GAAAATGAGCAATGTAGACGAGGATGATGAGGAAGAAGAAGGTTCTTCTGATGTTACAGCAGATGATTCAGATGAATAActatagagagttgaattaggg gttggctctgttgtttgtacgtttgctactaagtcgatgtgtgttttatgtcagttataaaaagattatagccaattcgtagcttgttatgtgtgagtgt cggttatgtttgctgtcgaaaatctttgtatttagattatagaacagataaataagaaagcacttgaatattattgaaaagactctgaagttgaatccat ttacggactccataTCAAGAGTTAAAACATAACAAGAAAAGAAAAATAAAACCAAAGCACTCTCCACCGCGGAGACGGAGAACAAGGTGAAGAGTTGACT CTTTCTGGATATTGTAATCCGCTAAAGTGTAATAACCATCTTCAAGCTGCTCGCCTGCAAAGATTAGCCTCTGTTGGTCCGGTTGGATCCTTTCTTTGTC CTG
Border_1 (119013_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCAAAACTCTA
AGCCCAAATTCACCTCAGACTCTGAAGAGGAACTTTATTAGCCAGAACAGAGTAAGCTGCTTTGCGTACCTGATTCATTAACATCGAGCGTGCAATCAAT
AATTGCTTGGGTGGTTGCATTTGAAGGAGGCAGAGATAAAACAATTGTTTTGCGTACCTCCTGTAAACAATAAAAACATCAACAATAAGACTTTGGCAAG
CATTGATGACAAATATCAGAATGTAATTTATGATGTCAAAGCAGAAATGGTAAAAGATAGAAACTTTACCGGATTCTGTTCCAAAGGAAGCACCTCAAGT
AGCAAATCAAGAATGTCACTATTCTCAGGATCATTCACAAAACGTGAAAGAGACCTCACAGCAAATGTACGTATAACAGGAACTTTGTCCCGACTCGCAA
CATCATACAATCAATTACATCATCCCATAGTTTCCCCCCNTTT
| Start of BLAST Alignment: | NT 1070 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 1015 / Intron 3 of 11 |
BLAST Details: Query Sequence: 119013_LB1 Length: (643 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g37630 68418.t04206 chromosome condensation family pro... 2206 2.7e-94 1 At1g33950 68414.t03787 avirulence-responsive family prote... 185 0.996 1 At5g67240 68418.t07806 exonuclease family protein contain... 183 0.999 1 At4g26620 68417.t03566 sucrase-related 182 0.9991 1 >At5g37630 68418.t04206 chromosome condensation family protein contains pfam profile: PF04154 chromosome condensation protein 3, C-terminal region Length = 5359 Minus Strand HSPs: Score = 2206 (337.0 bits), Expect = 2.7e-94, P = 2.7e-94 Identities = 472/500 (94%), Positives = 472/500 (94%), Strand = Minus / Plus Query: 632 AACTATGGGATGATGTAATTGATTGTATGATGTTGCGAGT-CGGGACAAAGTTCCTGTTA 574 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 572 AACTATGGGATGATGTAATTGATTGTATGATGTTGCGAGTTCGGGACAAAGTTCCTGTTA 631 Query: 573 TACGTACATTTGCTGTGAGGTCTCTTTCACGTTTTGTGAATGATCCTGAGAATAGTGACA 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 TACGTACATTTGCTGTGAGGTCTCTTTCACGTTTTGTGAATGATCCTGAGAATAGTGACA 691 Query: 513 TTCTTGATTTGCTACTTGAGGTGCTTCCTTTGGAACAGAATCCGGTAAAGTTTCTATCTT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 TTCTTGATTTGCTACTTGAGGTGCTTCCTTTGGAACAGAATCCGGTAAAGTTTCTATCTT 751 Query: 453 TTACCATTTCTGCTTTGACATCATAAATTACATTCTGATATTTGTCATCAATGCTTGCCA 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 TTACCATTTCTGCTTTGACATCATAAATTACATTCTGATATTTGTCATCAATGCTTGCCA 811 Query: 393 AAGTCTTATTGTTGATGTTTTTATTGTTTACAGGAGGTACGCAAAACAATTGTTTTATCT 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 AAGTCTTATTGTTGATGTTTTTATTGTTTACAGGAGGTACGCAAAACAATTGTTTTATCT 871 Query: 333 CTGCCTCCTTCAAATGCAACCACCCAAGCAATTATTGATTGCACGCTCGATGTTAATGAA 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 CTGCCTCCTTCAAATGCAACCACCCAAGCAATTATTGATTGCACGCTCGATGTTAATGAA 931 Query: 273 TCAGGTACGCAAAGCAGCTTACTCTGTTCTGGCTAATAAAGTTCCTCTTCAGAGTCTGAG 214 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 932 TCAG-TACGCAAAGCAGCTTACTCTGTTCTGGCTAATAAAGTTCCTCTTCAGAGTCTGAG 990 Query: 213 GTGAATTTGGGCTTAGAGTTTTGGTGTAAACAAAT-TGACG-CTT-A--GACAACTTAAT 159 ||||||||||||||||||||||||| || | | | | ||| | ||| |||||| Sbjct: 991 GTGAATTTGGGCTTAGAGTTTTGGTCTATTTATTTCTTTCTTCTTCATTGACCTCTTAAT 1050 Query: 158 AACACATTGCGGACGTTTTT 139 | | || | ||||| Sbjct: 1051 AGAAGTTTTTTGCTATTTTT 1070 >At1g33950 68414.t03787 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to AIG1 protein SP:P54120 (Arabidopsis thaliana), NTGP4 GB:AAD09518 (Nicotiana tabacum); contains Pfam profile: PF00735 cell division protein (members of this family bind GTP) Length = 6137 Minus Strand HSPs: Score = 185 (33.8 bits), Expect = 5.5, P = 0.996 Identities = 151/253 (59%), Positives = 151/253 (59%), Strand = Minus / Plus
Border_2 (119013_LB2)
TCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCAC
AATATAAGCTTTAGCATCAAGCTAAGGACCACAATTCTTCAGAGAGGGCTCGCTGATCGTGCTTGTAAATGTTTCAACGGAATGCTTGAAGCTAATGAAA
GAGCAATGGCTAGCTAACTATTGTGAAGGAGATCCTATCACATTTCTTAAATACCTTGACGTTGAAACCTACGAATCTGTGGCAGAATCGGCGTTGGAAG
TTCTGTTGAGTGAAGGGTTGATAATGCCCTCCGATGATAAAAGCATCCAGCAGTACATATTGTCAGCAGATGGTGAAACTAGAGGTTTGTTGAAGTCTGG
ACAATAAATGCAATGCATAAGTTTGCAGATTCTGCATGAGCTTATATTTTCTTATACCTGTGTTAGATGAAAGCACATGTTCTGCACCCAGCATTCAACT
TATGGAGCCAGAGATTGCTCTTTACTGGAGGATTAT
| Start of BLAST Alignment: | NT 1144 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 1144 / Intron 3 of 11 |
BLAST Details: Query Sequence: 119013_LB2 Length: (536 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g37630 68418.t04206 chromosome condensation family pro... 2121 2.0e-90 1 >At5g37630 68418.t04206 chromosome condensation family protein contains pfam profile: PF04154 chromosome condensation protein 3, C-terminal region Length = 5359 Plus Strand HSPs: Score = 2121 (324.3 bits), Expect = 2.0e-90, P = 2.0e-90 Identities = 427/429 (99%), Positives = 427/429 (99%), Strand = Plus / Plus Query: 108 GCTTTAGCATCAAGCTAAGGACCACAATTCTTCAGAGAGGGCTCGCTGATCGTGCTTGTA 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1145 GCTTTAGCATCAAGCTAAGGACCACAATTCTTCAGAGAGGGCTCGCTGATCGTGCT-GTA 1203 Query: 168 AATGTTTCAACGGAATGCTTGAAGCTAATGAAAGAGCAATGGCTAGCTAACTATTGTGAA 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 AATGTTTCAACGGAATGCTTGAAGCTAATGAAAGAGCAATGGCTAGCTAACTATTGTGAA 1263 Query: 228 GGAGATCCTATCACATTTCTTAAATACCTTGACGTTGAAACCTACGAATCTGTGGCAGAA 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 GGAGATCCTATCACATTTCTTAAATACCTTGACGTTGAAACCTACGAATCTGTGGCAGAA 1323 Query: 288 TCGGCGTTGGAAGTTCTGTTGAGTGAAGGGTTGATAATGCCCTCCGATGATAAAAGCATC 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 TCGGCGTTGGAAGTTCTGTTGAGTGAAGGGTTGATAATGCCCTCCGATGATAAAAGCATC 1383 Query: 348 CAGCAGTACATATTGTCAGCAGATGGTGAAACTAGAGGTTTGTTGAAGTCTGGACAATAA 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 CAGCAGTACATATTGTCAGCAGATGGTGAAACTAGAGGTTTGTTGAAGTCTGGACAATAA 1443 Query: 408 ATGCAATGCATAAGTTTGCAGATTCTGCATGAGCTTATATTTTCTTATACCTGTGTTAGA 467 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1444 ATGCAATGCATAAGTTTGCAGATTCTGCATGTGCTTATATTTTCTTATACCTGTGTTAGA 1503 Query: 468 TGAAAGCACATGTTCTGCACCCAGCATTCAACTTATGGAGCCAGAGATTGCTCTTTACTG 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 TGAAAGCACATGTTCTGCACCCAGCATTCAACTTATGGAGCCAGAGATTGCTCTTTACTG 1563 Query: 528 GAGGATTAT 536 ||||||||| Sbjct: 1564 GAGGATTAT 1572