At5g39710 SYNGENTA 119165
Genomic Sequence (from TAIR)
gttctaaattgtctccatcttacctaatttaaaattaatttaccatttagaattaagtaaaaaatctagaattaagaaagaaatcagtcatattttcttg tacatttgactatggtttacatttcagttatgttacttaattctaaattgttttcatatttagaagaaaatatacaatttattagatcatgaaaattgta taaaacacagaacttcccattaaaagtagaattttatttttcaaaatttcgaacttaattttagttatagaatttcattgttataagtcaatttgtatta tcaattttaaaaataaatttctcaaccaaatataataaattatagccacagaaaaaaagccacaggtgaaaaatgatcggacggctgagatcaattg◄tg cttcttcttcttcttcttcttcttcttcttcgagcctttctcttcctaaaaccctaaATGTTTCTCACTAAAAC◄C►CTAATTC►GACGATCTCTCTCAA CCTTCGCTTCTTCTCCTTCAGATTCACTTCTCGCCGATAAAGCTTTAACCTTTCTCAAACGCCATCCATACCAACTTCATCATCTCTCTGCAAATTTCAC ACCAGAAGCAGCTTCAAATCTCCTCCTCAAATCTCAAAACGATCAAGCACTAATCCTCAAGTTCCTAAATTGGGCAAACCCACATCAATTCTTCACTCTC CGTTGCAAATGCATCACTCTTCACATCCTCACCAAATTCAAACTCTACAAAACAGCTCAAATCCTCGCCGAAGATGTCGCAGCCAAAACCCTAGACGACG AATACGCTTCTCTCGTCTTCAAATCTCTACAAGAGACTTACGATTTGTGTTATTCAACTTCCTCTGTTTTCGATTTAGTAGTGAAATCTTACTCTCGTTT GAGTTTGATTGATAAGGCTTTAAGCATTGTTCATTTAGCTCAAGCTCATGGCTTTATGCCTGGAGTTTTGTCTTACAATGCGGTGTTAGATGCTACGATT AGATCTAAGAGGAACATTAGTTTTGCTGAGAATGTGTTCAAAGAAATGTTGGAGAGCCAAGTTTCTCCTAATGTGTTTACTTACAATATCTTGATTAGAG GGTTTTGCTTTGCTGGGAATATAGATGTTGCTTTAACGTTATTCGATAAAATGGAGACGAAAGGTTGTTTACCAAATGTTGTTACTTACAACACTTTGAT TGATGGGTATTGTAAGTTGCGTAAGATTGATGATGGGTTTAAGCTTTTGAGATCAATGGCGTTAAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTT GTTATCAACGGGTTATGTAGAGAAGGGAGGATGAAGGAGGTAAGTTTTGTTCTTACGGAGATGAATAGGAGAGGGTATTCGCTTGATGAAGTTACTTATA ATACTCTTATTAAAGGTTATTGTAAAGAAGGTAATTTTCATCAAGCTCTTGTGATGCATGCTGAGATGTTGAGACATGGGTTGACACCTAGTGTTATTAC TTATACTTCGTTGATACATAGTATGTGTAAGGCTGGGAATATGAACAGGGCTATGGAGTTTCTTGATCAGATGCGGGTTAGAGGGCTTTGTCCGAATGAG CGTACTTACACGACGTTGGTTGATGGGTTTTCTCAAAAGGGGTATATGAATGAAGCTTATCGGGTTTTGAGAGAGATGAATGATAACGGGTTTTCTCCTT CGGTTGTGACTTATAATGCTTTGATTAATGGTCATTGTGTTACTGGGAAAATGGAAGATGCGATAGCAGTTCTCGAAGATATGAAGGAGAAAGGTTTGAG TCCGGATGTAGTGAGTTATAGCACGGTATTATCCGGCTTTTGTAGAAGTTATGATGTTGATGAGGCGCTTAGAGTCAAGAGGGAAATGGTTGAAAAAGGT ATCAAACCTGATACAATCACCTACTCATCTCTGATCCAAGGGTTTTGTGAACAGAGAAGGACTAAGGAAGCGTGTGATCTTTACGAAGAAATGCTGAGAG TTGGTCTTCCACCAGATGAGTTTACTTACACAGCCTTGATCAATGCTTATTGTATGGAAGGCGATTTGGAAAAAGCTCTACAGTTGCACAATGAAATGGT CGAGAAAGGAGTATTGCCTGATGTTGTCACTTACAGCGTGCTGATCAACGGGCTTAACAAACAATCTCGAACAAGAGAGGCAAAAAGACTTTTGCTCAAG CTGTTCTACGAAGAATCAGTCCCTAGCGATGTCACATATCACACACTCATAGAAAACTGCAGTAACATCGAGTTCAAAAGCGTAGTATCTCTTATTAAAG GATTCTGTATGAAAGGAATGATGACTGAAGCTGATCAAGTTTTCGAATCCATGCTTGGGAAAAACCATAAACCCGATGGAACAGCATACAACATTATGAT TCATGGTCATTGCAGAGCCGGAGATATCCGCAAAGCGTATACTCTATACAAAGAGATGGTAAAATCCGGATTCCTTCTCCATACTGTGACAGTGATTGCT CTGGTTAAAGCCTTGCACAAGGAAGGGAAAGTTAATGAATTGAATAGTGTGATTGTGCATGTATTAAGAAGCTGTGAATTGAGCGAAGCAGAGCAAGCCA AAGTGCTTGTGGAGATCAATCATAGAGAAGGGAATATGGATGTGGTTCTTGATGTGCTTGCTGAAATGGCCAAAGATGGATTTCTTCCCAACGGCATAAG TTAAtctagtgagtaaaatcatttacatgggcaatggatcaaccatgcaccagcaacaatgatgctaatcgtgggagatttttcagaataccgcggtttc gtagctgctattcaccgtttgaagttgaaatggtacaatgttatctttgcagtttgtgtaatatatataaggcaaacaacttaattattgtaagacattg tttataatccatcatcaaagaatgaagatagagaaaccattgcaaattgaactaagagaacatcttataggttttggcttgaaggatgatctgtctcgct ccacctattggtgctaacaccgcgattaggactccaactattatcgagatctgtaaatcatcaaatatgttcaagagttaactttttaattagcattatg ttat
Border_1 (119165_AbB)
NTTGTTNATTTGTTTCATNTTGTTTTAGTGAGAACCATNTAGGGTTTTAGNAAGANAAAGGCTCCGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCCA
ATTGATCTCAGCCGTCCGATCATTTTTCACCTGTGGCTTTTTTTCTGTGGCTATAATTTATTATATTTGGTTGAGAAATTTATTTTTAAAATTGATAATA
CAAATTGACTTATAACAATGAAATTCTATAACTAAAATTAAGTTCGAAATTTTGAAAAATAAAATTCTACTTTTAATGGGAAGTTCTGTGTTTTATACAA
TTTTCATGATCTAATAAATTGTATATTTTCTTCTAAATATGAAAACAATTTAGAATTAAGTAACATAACTGAAATGTAAACCATAGTCAAATGTACAAGA
AAATATGACTGATTTCTTTCTTAATTCTAGATTTTTTACTTAATTCTAAATGGTAAATTAATTTTAAATTAGGTAAGATGGAGACAATTTAGAACTAAAT
TAGATTGTTTTCATGATCTAATTATTCAACAACTTTTCTTTATAAACCTACCTTTAAATAATCACGTCATTGTTTTTGCATTCATCAGGTATCATATTTT
GGTAGGTGAGTTAAAATAAATACCTTAANAAGTGTTGTCAAAACTATCAAAGCANTGACTTTTGTTGTTTANCAA
| Start of BLAST Alignment: | NT 17 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT < 59 / Upstream |
BLAST Details: Query Sequence: 119165_AbB Length: (675 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MIJ24 67745 2897 1.1e-124 1 MYH19 67748 513 5.5e-17 1 FCAALL 68169 422 7.1e-13 1 F14P22 67306 404 4.6e-12 1 MIJ24 67745 Length = 78,697 Minus Strand HSPs: Score = 2897 (440.7 bits), Expect = 1.1e-124, P = 1.1e-124 Identities = 609/654 (93%), Positives = 609/654 (93%), Strand = Minus / Plus Query: 675 TTGNTAAACAACAAAAGTCANTGCTTTGATAGTTTTGACAACACTTNTTAAGGTATTTAT 616 ||| |||||||||||| | | |||||||||||||||||||||| || ||||||||||||| Sbjct: 67273 TTGTTAAACAACAAAAATAAATGCTTTGATAGTTTTGACAACA-TT-TTAAGGTATTTAT 67330 Query: 615 TTTAACTCACCTACCAAAATATGATACCTGATGAATGCAAAAACAATGACGTGATTATTT 556 |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 67331 TTTAACTCAC-TACCAAAATATGATAC-TGATGAATGCAAAAACAATGAC-TGATTATTT 67387 Query: 555 AAAGGTAGGTTTATAAAGAAAAGTTGTTGAATAATTAGATCATGAAAACAATCTAATTTA 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67388 AAAGGTAGGTTTATAAAGAAAAGTTGTTGAATAATTAGATCATGAAAACAATCTAATTTA 67447 Query: 495 GTTCTAAATTGTCTCCATCTTACCTAATTTAAAATTAATTTACCATTTAGAATTAAGTAA 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67448 GTTCTAAATTGTCTCCATCTTACCTAATTTAAAATTAATTTACCATTTAGAATTAAGTAA 67507 Query: 435 AAAATCTAGAATTAAGAAAGAAATCAGTCATATTTTCTTGTACATTTGACTATGGTTTAC 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67508 AAAATCTAGAATTAAGAAAGAAATCAGTCATATTTTCTTGTACATTTGACTATGGTTTAC 67567 Query: 375 ATTTCAGTTATGTTACTTAATTCTAAATTGTTTTCATATTTAGAAGAAAATATACAATTT 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67568 ATTTCAGTTATGTTACTTAATTCTAAATTGTTTTCATATTTAGAAGAAAATATACAATTT 67627 Query: 315 ATTAGATCATGAAAATTGTATAAAACACAGAACTTCCCATTAAAAGTAGAATTTTATTTT 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67628 ATTAGATCATGAAAATTGTATAAAACACAGAACTTCCCATTAAAAGTAGAATTTTATTTT 67687 Query: 255 TCAAAATTTCGAACTTAATTTTAGTTATAGAATTTCATTGTTATAAGTCAATTTGTATTA 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67688 TCAAAATTTCGAACTTAATTTTAGTTATAGAATTTCATTGTTATAAGTCAATTTGTATTA 67747 Query: 195 TCAATTTTAAAAATAAATTTCTCAACCAAATATAATAAATTATAGCCACAGAAAAAAAGC 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67748 TCAATTTTAAAAATAAATTTCTCAACCAAATATAATAAATTATAGCCACAGAAAAAAAGC 67807 Query: 135 CACAGGTGAAAAATGATCGGACGGCTGAGATCAATTGGGNNNNNNNNNNNNNNNNNNNNN 76 ||||||||||||||||||||||||||||||||||||| | Sbjct: 67808 CACAGGTGAAAAATGATCGGACGGCTGAGATCAATTGTGCTTCTTCTTCTTCTTCTTCTT 67867 Query: 75 NNNNNNNNACGGAGCCTTTNTCTTNCTAAAACCCTANATGGTTCTCACTAAAAC 22 || ||||||| |||| ||||||||||| ||| ||||||||||||| Sbjct: 67868 CTTCTTCTTCG-AGCCTTTCTCTTCCTAAAACCCTAAATGTTTCTCACTAAAAC 67920 MYH19 67748 Length = 87,380 Plus Strand HSPs: Score = 513 (83.0 bits), Expect = 5.5e-17, P = 5.5e-17 Identities = 313/517 (60%), Positives = 313/517 (60%), Strand = Plus / Plus
Border_2 (119165_LB1)
CACTAGCATCTGAATTTATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTT
GTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGACAAATTGACGATCTCTCTCAACCTTCGCTTCTTCTCCTTCAGATTCACTTCTCGCCGATAA
AGCTTTAACCTTTCTCAAACGCCATCCATACCAACTTCATCATCTCTCTGCAAATTTCACACCAGAAGCAGCTTCAAATCTCCTCCTCAAATCTCAAAAC
GATCAAGCACTAATCCTCAAGTTCCTAAATTGGGCAAACCCACATCAATTCTTCACTCTCCGTTGCAAATGCATCACTCTTCACATCCTCACCAAATTCA
AACTCTACAAAACAGCTCAAATCCTCGCCGAAGATGTCGCAGCCAAAACCCTAGACGACGAATACGCTTCTCTCGTCTTCAAATCTCTACAAGAGACTTA
CGATTTGTGTTATTCAACTTCCTCTGTTTTCGATTTAGTAGTGAAATCTTACTCTCGTTTGAGTTTGATTGATAAGGCTTTAAGCATTGTTCATTTAGCT
CAAGCTCATGGCTTTATGCCTGGAGTTTTGTCTTACAATG
| Start of BLAST Alignment: | NT 18 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 25 / Exon 1 of 1 |
BLAST Details: Query Sequence: 119165_LB1 Length: (640 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g39710 68418.t04474 pentatricopeptide (PPR) repeat-con... 2486 6.3e-108 1 At1g26500 68414.t02898 pentatricopeptide (PPR) repeat-con... 248 0.0039 1 At1g34110 68414.t03808 leucine-rich repeat transmembrane ... 200 0.64 1 At5g48370 68418.t05550 thioesterase family protein simila... 195 0.80 1 >At5g39710 68418.t04474 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2244 Plus Strand HSPs: Score = 2486 (379.0 bits), Expect = 6.3e-108, P = 6.3e-108 Identities = 500/502 (99%), Positives = 500/502 (99%), Strand = Plus / Plus Query: 140 CAAATT-GACGATCTCTCTCAACCTTCGCTTCTTCTCCTTCAGATTCACTTCTCGCCGAT 198 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 CTAATTCGACGATCTCTCTCAACCTTCGCTTCTTCTCCTTCAGATTCACTTCTCGCCGAT 78 Query: 199 AAAGCTTTAACCTTTCTCAAACGCCATCCATACCAACTTCATCATCTCTCTGCAAATTTC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 AAAGCTTTAACCTTTCTCAAACGCCATCCATACCAACTTCATCATCTCTCTGCAAATTTC 138 Query: 259 ACACCAGAAGCAGCTTCAAATCTCCTCCTCAAATCTCAAAACGATCAAGCACTAATCCTC 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 ACACCAGAAGCAGCTTCAAATCTCCTCCTCAAATCTCAAAACGATCAAGCACTAATCCTC 198 Query: 319 AAGTTCCTAAATTGGGCAAACCCACATCAATTCTTCACTCTCCGTTGCAAATGCATCACT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 AAGTTCCTAAATTGGGCAAACCCACATCAATTCTTCACTCTCCGTTGCAAATGCATCACT 258 Query: 379 CTTCACATCCTCACCAAATTCAAACTCTACAAAACAGCTCAAATCCTCGCCGAAGATGTC 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 CTTCACATCCTCACCAAATTCAAACTCTACAAAACAGCTCAAATCCTCGCCGAAGATGTC 318 Query: 439 GCAGCCAAAACCCTAGACGACGAATACGCTTCTCTCGTCTTCAAATCTCTACAAGAGACT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 GCAGCCAAAACCCTAGACGACGAATACGCTTCTCTCGTCTTCAAATCTCTACAAGAGACT 378 Query: 499 TACGATTTGTGTTATTCAACTTCCTCTGTTTTCGATTTAGTAGTGAAATCTTACTCTCGT 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 TACGATTTGTGTTATTCAACTTCCTCTGTTTTCGATTTAGTAGTGAAATCTTACTCTCGT 438 Query: 559 TTGAGTTTGATTGATAAGGCTTTAAGCATTGTTCATTTAGCTCAAGCTCATGGCTTTATG 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 TTGAGTTTGATTGATAAGGCTTTAAGCATTGTTCATTTAGCTCAAGCTCATGGCTTTATG 498 Query: 619 CCTGGAGTTTTGTCTTACAATG 640 |||||||||||||||||||||| Sbjct: 499 CCTGGAGTTTTGTCTTACAATG 520 >At1g26500 68414.t02898 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1518 Plus Strand HSPs: Score = 248 (43.3 bits), Expect = 0.0039, P = 0.0039 Identities = 288/508 (56%), Positives = 288/508 (56%), Strand = Plus / Plus