At4g14590 SYNGENTA 122206
Genomic Sequence (from TAIR)
aacaatttttattagtcccttataacatatctcttttactgatcttaagcatcatccatagacaattgcaggatcacaccagttttggatcatctaaatt ttttttaattttactaaaattcctccagatctaaatttcattaaatcctaagtctaatacattcggtatttgagaaccccgcctttgttttaagattttt aatcataactcataagcgcgtatgaattcggattatccaaaggctaaactacagaaccaaaacgacatagttttttgtcgtttagaatctataagcgcag acaaaagtcaactttagaatcaacccaaaaatagaagtcaaaattaaaaaccaaaaccctaagattttagagtagactctcttcgaATGGAGAACCACTT TGTTACATCGAAACTGATCCGTGTCTCTCTACACGAAGTTGAGAACCAGCTCGAACTATCACTACGTCAAGCCTTCGAGAATCTCCAGCCGAAACTACGA CCACCGTTCTCCTTAGAACTCCCAGACCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTATGGAGTTTTATGCGAACCAAATTCCTCTAAAACCC ACATCAAGCACTTACATGCTCTCGTCACTGATGGGTAC►GCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAA◄TTGTATGTTAAGCTTGTT►GA TTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTTTCAAGTGTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGGA AgtggggattatggtgatcataatgtttggctttgttctgaattagTTAGTTTGTTTCTTGAGAAATGGGAATGCTTGCTTGATGATTCTCCATTGGTGT TGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTAGCGGATCATTATAGGGTTTTAGGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATT CTGTGTTAAAATGTTTAGAGAGCAGCTTCATTTAAGTTTGAAGATTGGACGGGACCTTATCCTGTTGTTGCAGGATCTGTCTCATGTCTCTGAGTTCAGA GAGATATGGAACGATTTGGTGTCGAACCATTGCTCTGAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTTCTTCGAATCACTCCTGAGATGGAAA CACAATTAAGGTTTTTGCTAGGAAATGTTAAATTGGGAAGTCATAAGCGGCATCAGATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAAGAAAC ACTTTTGATAGATATAGTGAGATTCGTTTGCTGTGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATGCCAAGATGGGCTATTATAGGTTGG CTTTTGGAACTGTGTAGGCAAAATCATCACATCGAGCGAAGCGTTATGCTGGCTCTGTTTTACGACTGGCTCTTCTTTGACGAAAGAATCGATAATATTA TGAATGTTGAACCTGCTGCTCTCTTGATGGTATGGTCAATACCGCAGTATCCACACATCACTCACTCCTTACTTGAATTCTTACTTCATCTTGTCGAAAC TTATGACATAACCCGTCGCGATACGATTGTAAGAGGTTTGACGTCAGCATTCAGAGAAATTGAGCGAAAAGGAGTTATTCGGTCGCTGGATATATTCCTA GCAAATCCTGCACTTGCACCAGATTTGAAGAAGAAGCTAGCAAATCTGTTGTCATGTCATCAGGAGAAGACGGTTCATGTGAATCTCAATCAAGTTAGTG TTCTTTCTAAGCAAACAGTTCTTTCTTCGGAAGCTAATTTAAAAGATTGCAGCACCAAAATTGTTGATACTCCTGACCAGAAGTTGGACAATTCCGTTGA AAATCCAGCAAAAAACCATAAGGTTGAACTGTTCAAAGAGTTTATAAGACCCTCACGGTGAacaaaacccttagtctatgttgtgaatcttctataaatc ttcagccggaatcgaagctggactctctctactaacgatcaagagactcacactcgagaaaaccatacaatcaaacacttggaacgaagacggagaagaa tgacacccacgtgattcagtgattgatcctatgtctcggcgagaacagagactagcaatccactatctcaagtttacaagatcatcaagagttctaccag aggttcacgactaagtgttctcactccaaagataatagaatgaacacagcttagagatgatctttctctattatagttgtaacaaactctcgataaacca atataatctttaaccattaccggttcaattaaatttttggttaaaagaatctttaaccgtcgatagctctccttactgatatgatccaacggttaaataa aac
Border_1 (122206_RBD)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGTTTAGTCAATTTGTTCAACAACGATTCCAATAAGTAAACTAGTGAAAAACGCGTACCCATCAGTGACGAGAG
CATGTAAGTGCTTGATGTGGGTTTTAGAGGAATTTGGTTCGCATAAAACTCCATAGACGATGGCTTTATTGAGCTCAAGATACTCTTGTGGGTCTGGGAG
TTCTAAGGAGAACGGTGGTCGTAGTTTCGGCTGGAGATTCTCGAAGGCTTGACGTAGTGATAGTTCGAGCTGGTTCTCAACTTCGTGTAGAGAGACACGG
ATCAGTTTCGATGTAACAAAGTGGTTCTCCATTCGAAGAGAGTCTACTCTAAAATCTTAGGGTTTTGGTTTTTAATTTTGACTTCTATTTTTGGGTTGAT
TCTAAAGTTGACTTTTGTCTGCGCTTATAGATTCTAAACGACAAAAAACTATGTCGTTTTGGTTCTGTAGTTTAGCCTTTGGATAATCCGAATTCATACG
CGCTTATGAGTTATGATTAAAAATCTTAAAACAAAGGCGGGGNTCTCAAATACCGAATGTATTAGACTTAGGATTTAATGAAATTTAGATCTGGAGGAAT
TTTAGTAAAANTAAAAAAAATTTAGATGATCCAAAACTGGTGTGATCCTGCAATTGTCTATGGATGAAGCT
| Start of BLAST Alignment: | NT 291 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 291 / Exon 1 of 2 |
BLAST Details: Query Sequence: 122206_RBD Length: (871 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g14590 68417.t02121 expressed protein 1455 3.3e-61 1 At4g36400 68417.t04752 FAD linked oxidase family protein ... 189 0.997 1 At3g46940 68416.t04738 deoxyuridine 5'-triphosphate nucle... 185 0.9991 1 >At4g14590 68417.t02121 expressed protein Length = 1572 Minus Strand HSPs: Score = 1455 (224.4 bits), Expect = 3.3e-61, P = 3.3e-61 Identities = 291/291 (100%), Positives = 291/291 (100%), Strand = Minus / Plus Query: 532 ATGGAGAACCACTTTGTTACATCGAAACTGATCCGTGTCTCTCTACACGAAGTTGAGAAC 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ATGGAGAACCACTTTGTTACATCGAAACTGATCCGTGTCTCTCTACACGAAGTTGAGAAC 60 Query: 472 CAGCTCGAACTATCACTACGTCAAGCCTTCGAGAATCTCCAGCCGAAACTACGACCACCG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 CAGCTCGAACTATCACTACGTCAAGCCTTCGAGAATCTCCAGCCGAAACTACGACCACCG 120 Query: 412 TTCTCCTTAGAACTCCCAGACCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTAT 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 TTCTCCTTAGAACTCCCAGACCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTAT 180 Query: 352 GGAGTTTTATGCGAACCAAATTCCTCTAAAACCCACATCAAGCACTTACATGCTCTCGTC 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 GGAGTTTTATGCGAACCAAATTCCTCTAAAACCCACATCAAGCACTTACATGCTCTCGTC 240 Query: 292 ACTGATGGGTACGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAA 242 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ACTGATGGGTACGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAA 291 >At4g36400 68417.t04752 FAD linked oxidase family protein low similarity to SP|Q12627 from Kluyveromyces lactis and SP|P32891 from Saccharomyces cerevisiae; contains Pfam FAD linked oxidases, C-terminal domain PF02913, Pfam FAD binding domain PF01565 Length = 3674 Plus Strand HSPs: Score = 189 (34.4 bits), Expect = 5.7, P = 0.997 Identities = 105/165 (63%), Positives = 105/165 (63%), Strand = Plus / Plus
Border_2 (122206_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCGATTCCGCTAAGATTCAGCTTAT
TTGGGTAACTAAGGAGATGATTGATGTTTCAAGTGTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGGAAGTGGGGATTATGGTGATCAT
AATGTTTGGCTTTGTTCTGAATTAGTTAGTTTGTTTCTTGAGAAATGGGAATGCTTGCTTGATGATTCTCCATTGGTGTTGACTAGTGCTCTGTATAGTT
TTCTTCGGTTATTAGCGGATCATTATAGGGTTTTAGGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATTCTGTGTTAAAATGTTTAGAGA
GCAGCTTCATTTAAGTTTGAAGATTGGACGGGACCTTATCCTGTTGTTGCAGGATCTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGATTTGGTG
TCGAACCATTGCTCTGAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTTCTTCGAATCACTCCTGAGATGGAAACACAATTAAGGTTTTTGCTAG
GAAATGTTAAATTGGGAAGTCATAAGCGGCATCAGATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAAGAAACACTTTTGATAGATATAGTGAG
ATTCGTTTGCTGTGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATGCCAAGATGGGCTATTATAG
| Start of BLAST Alignment: | NT 252 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 309 / Exon 1 of 2 |
BLAST Details: Query Sequence: 122206_LBU Length: (874 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g14590 68417.t02121 expressed protein 3512 4.1e-154 1 At2g11050 68415.t01116 gypsy-like retrotransposon family ... 209 0.51 1 At1g14180 68414.t01501 expressed protein 199 0.84 1 At5g40080 68418.t04525 60S ribosomal protein-related cont... 198 0.86 1 >At4g14590 68417.t02121 expressed protein Length = 1572 Plus Strand HSPs: Score = 3512 (533.0 bits), Expect = 4.1e-154, P = 4.1e-154 Identities = 736/760 (96%), Positives = 736/760 (96%), Strand = Plus / Plus Query: 121 GCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATT-AA--GT-TGTCTAAGC-- 174 ||||| |||| || ||| | | | ||| ||| || || || ||| ||||| Sbjct: 253 GCGTTT-TTCACTAGTTTACTTAT-TG-G-AATC-GTTGTTGAATTGTATGT-TAAGCTT 306 Query: 175 GTCGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTTTCAAGT 234 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 GTTGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTTTCAAGT 366 Query: 235 GTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGGAAGTGGGGATTATGGT 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 GTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGGAAGTGGGGATTATGGT 426 Query: 295 GATCATAATGTTTGGCTTTGTTCTGAATTAGTTAGTTTGTTTCTTGAGAAATGGGAATGC 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 GATCATAATGTTTGGCTTTGTTCTGAATTAGTTAGTTTGTTTCTTGAGAAATGGGAATGC 486 Query: 355 TTGCTTGATGATTCTCCATTGGTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 TTGCTTGATGATTCTCCATTGGTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTA 546 Query: 415 GCGGATCATTATAGGGTTTTAGGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 GCGGATCATTATAGGGTTTTAGGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATC 606 Query: 475 AAATTCTGTGTTAAAATGTTTAGAGAGCAGCTTCATTTAAGTTTGAAGATTGGACGGGAC 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 AAATTCTGTGTTAAAATGTTTAGAGAGCAGCTTCATTTAAGTTTGAAGATTGGACGGGAC 666 Query: 535 CTTATCCTGTTGTTGCAGGATCTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGAT 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 667 CTTATCCTGTTGTTGCAGGATCTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGAT 726 Query: 595 TTGGTGTCGAACCATTGCTCTGAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTT 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 727 TTGGTGTCGAACCATTGCTCTGAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTT 786 Query: 655 CTTCGAATCACTCCTGAGATGGAAACACAATTAAGGTTTTTGCTAGGAAATGTTAAATTG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 787 CTTCGAATCACTCCTGAGATGGAAACACAATTAAGGTTTTTGCTAGGAAATGTTAAATTG 846 Query: 715 GGAAGTCATAAGCGGCATCAGATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAA 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 GGAAGTCATAAGCGGCATCAGATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAA 906 Query: 775 GAAACACTTTTGATAGATATAGTGAGATTCGTTTGCTGTGTTATTCATCCAACTAACGAA 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 907 GAAACACTTTTGATAGATATAGTGAGATTCGTTTGCTGTGTTATTCATCCAACTAACGAA 966 Query: 835 ATCATCAGATCAGAGATCATGCCAAGATGGGCTATTATAG 874 |||||||||||||||||||||||||||||||||||||||| Sbjct: 967 ATCATCAGATCAGAGATCATGCCAAGATGGGCTATTATAG 1006 >At2g11050 68415.t01116 gypsy-like retrotransposon family (Athila) has a 1.7e-211 P-value blast match to GB:CAA57397 Athila ORF 1 [Arabidopsis thaliana] Length = 5686 Minus Strand HSPs: Score = 209 (37.4 bits), Expect = 0.71, P = 0.51 Identities = 283/496 (57%), Positives = 283/496 (57%), Strand = Minus / Plus