At5g63050 SYNGENTA 123345
Genomic Sequence (from TAIR)
cacaaccccttttaagtccaatgaaatcaagttgttagttaattcattgtgaaactagagattcaagttttggttccttcaaagatattcgatataaaag agaggacttcaagttttgagaacgtaattacatgtttcacgtcgtggttttcaaaaaaatgattataagaaatgttattttcgtgttgattgtatgattt gaagaaacaaaacatcatgtaaatctaaatgtaaagagcttttttatcttgaaaaaagttgataaaaaagttgtgaaagttctattcaaatgattttttt ttttgttaagactatgttcttcaactcgttatttgactatttaaaatagaaaatcaattgtgatttaataaaaaaaaaaacttaatagtaatttctccga aacgacgacgtttagaggtgttggtattaaaaaacctttgattaaccgcttgcctgcaatctgctctcctatctcttccaatctcctctcctctctatct atccgcgtccccatttcttcttccctctaaaattccaatctttcttattgcttttttttattcaaagcttcaagattttcactagggttctttccctttc tcttattcgataaattctgttcttttctttcgtattctcacggacgaacaaaccccaaggcaacgagctcatgattgaggtccgttcttctgctctttcc ctctcagtttcttcgcagctgttttctaatttgcaatctattttatggatttggggtacttttgttaagggaacaaaacctatcattttccaggtttctt atggttgcgctttagattttatagtttagtgtaatttaatctgatttggggaattgggtgttggataagagtgttttgcagctgagaggattgaaaaatt gaatatttatgatatttaagctcgctaatgaggttctcttacttcggattttgctcagcttcgctcctgtcaagtaatttttgttgtgatctatatatga aatttccttttaatgttttatggtcgctacttgtgatttcatcatctttggaggttacaatcatcttattcaatcctttcttcggcctcagattgtggct tttgagtaaatgattcactgctcagctagagacaATGGTGTTGGTAACCCATAAATTGCAGgtatcttagacatagatctgtaaagtcctaaattctact ttgttttgtgtctctgtaatggtcatgtctgcaaatggttgtaccttccgtttcactcttgtaaagccttcttttacttgccacactagaaatatagatg tttacctcccccttgttctctcatgtagGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTGTGTTTAAAGAGACCTGTTACG ACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGgtgagtatcccactttacaaatccctgcttaggttatg tactacttagtttgagactcattactctctctgtacgactgtactctaggaaggtagatacgtagttatattgtggattaaaatgtgcctcttaatacgc tgagacctatctgttagctaagagattccttgttagatactgagacgtatgaacatataggaaactatactaaaaagttatagttcatatattccctttg caattgattctcggaatcataatatgtt◄gt◄gaaactcttttgcagTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACAT CTTTTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAATAACTCTGTCAAACTATCTTACCGTTCAGATGATGA CGAAAATAATGTGAATGGCTCCCCAAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGCAACCCGCTATTCAGAAA CTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTATTCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCAAG AAACTGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCTGGTTTTGGAGTCTAGACGCAGCTATCAAGATTCCGTT GCTGTTATTgtaagtatcagcatcaaagcatctttttcttttgcttgatgaggtagtctagagttagttatcaatagaggaaaatcgactagatgtgaac ttatattcaaaaactgtccttaggaagatttaagagtgtcacagccacttttttcttttccaagttccttgtatgtgtattgactatactttcaccttga ccttttttgtagTGTTCCAGCTTTCCTAGCTGTTTACGCGATCTGTGGTGCTGAAGTTACAAAGGAATTATCCCCTATGTGGGTGGTTGGCCCCTTGATC ATCGCCCTTTATATAAAAATGTTCCAAGGACTATGTTCCCTTTACGCCTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACCTACCATCGTATTATC TTGTAGCATACCAATACATTGCCGATGGAAAGCTCAAAGACGACGTTAAAGCTCTAGTGTTTAAACCAGTGGTGGCCATCAAGAACACAGACTACAAAGA GCTCACACGCACGAAGCTGAAACAGTTCCAAGAATGGATCATTGAGAAATACCTGGATTTTGTTGAATCTGTATGGCCTTATTACTGCAGAACTATCAGA TTCCTGAAGAGGGCTAACCTGATTTGAagatcttcaacatggaaccctcaaattctgacttctcagggcttctctatgatttctctctgtgctttgttta cctttttttttttttttcttaattttaggaaggcttttcatgttgtttgttcttatctctatgtatactgataccttttttgaggttttacaatgagttc ttttaatattaagggttatcccttttctccatacttaaaaattatctatacacatataaatcgacaacaacagaagaaataagtgcttaaaggtctctta taaacctctTTAGCTCCGGAAATTTGATGGTAATGTTTCTTCAGTAAAGTACTCCTTTCTGACGGTCTCTGCTGAGCAAAACTTGACcttcacataaagc aaagtataaaaatccatctagtccagtcctctgaataaccacactatgtagtatatagcaattagaatcgatgcataaaaacatagcaatatggtatgga ag
Border_1 (123345_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATYACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
TGCTTCTTATTTACGAAATTGACGCTTAGACAACTTAATAACAAATTAATTGACAATATATAACATATTATGATTCCGAGAATCAATTGCAAAGGGAATA
TATGAACTATAACTTTTTAGTATAGTTTCCTATATGTTCATACGTCTCAGTATCTAACAAGGAATCTCTTAGCTAACAGATAGGTCTCAGCGTATTAAGA
GGCACATTTTAATCCACAATATAACTACGTATCTACCTTCCTAGAGTACAGTCGTACAGAGAGAGTAATGAGTCTCAAACTAAGTAGTACATAACCTAAG
CAGGGATTTGTAAAGTGGGATACTCACCTAAAACAACATTTTTGCTTCAATCGTAAATGCTTATCTTTCCTCTCAACAAAGTGCACTGTCGTAACAGGTC
TCTTTAAACACAAGCCTCTGGTCCATGTTGGCGAACTCCAAGTKAGAMAAGACATGTGAACCCTACWWGARARAACAAGGGGGRGGTAAACATCTATATT
TCTAGTGTGGCAAGTAAAAGAAGGCTTTACAAGAGNTGAAACGGAAGGTACAACCATTTGCAGACATGACCATTACAGAGACACAAAACAAAGTAGAATT
TAGGACTTTACAGATCTATGTCTAAGATACCTGCAATTTATGGGTTACCACACTNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
N
| Start of BLAST Alignment: | NT 596 / Intron 3 of 4 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 594 / Intron 3 of 4 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 123345_LB Length: (901 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 2893 2.3e-126 1 At1g72080 68414.t07627 hypothetical protein 230 0.061 1 At2g04200 68415.t00362 pseudogene, similar to OSJNBa0052O... 199 0.84 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 190 0.99 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Minus Strand HSPs: Score = 2893 (440.1 bits), Expect = 2.3e-126, P = 2.3e-126 Identities = 584/595 (98%), Positives = 591/595 (99%), Strand = Minus / Plus Query: 853 GTGT-GGTAACCCATAAATTGCAGGTATCTTAGACATAGATCTGTAAAGTCCTAAATTCT 795 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 GTGTTGGTAACCCATAAATTGCAGGTATCTTAGACATAGATCTGTAAAGTCCTAAATTCT 737 Query: 794 ACTTTGTTTTGTGTCTCTGTAATGGTCATGTCTGCAAATGGTTGTACCTTCCGTTTCANC 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 738 ACTTTGTTTTGTGTCTCTGTAATGGTCATGTCTGCAAATGGTTGTACCTTCCGTTTCA-C 796 Query: 734 TCTTGTAAAGCCTTCTTTTACTTGCCACACTAGAAATATAGATGTTTACCYCCCCCTTGT 675 ||||||||||||||||||||||||||||||||||||||||||||||||||+||||||||| Sbjct: 797 TCTTGTAAAGCCTTCTTTTACTTGCCACACTAGAAATATAGATGTTTACCTCCCCCTTGT 856 Query: 674 TYTYTCWWGTAGGGTTCACATGTCTTKTCTMACTTGGAGTTCGCCAACATGGACCAGAGG 615 |+|+||++||||||||||||||||||+|||+ |||||||||||||||||||||||||||| Sbjct: 857 TCTCTCATGTAGGGTTCACATGTCTTGTCTC-CTTGGAGTTCGCCAACATGGACCAGAGG 915 Query: 614 CTTGTGTTTAAAGAGACCTGTTACGACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTT 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 CTTGTGTTTAAAGAGACCTGTTACGACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTT 975 Query: 554 ACGATTGAAGCAAAAATGTTGTTTTAGGTGAGTATCCCACTTTACAAATCCCTGCTTAGG 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 ACGATTGAAGCAAAAATGTTGTTTTAGGTGAGTATCCCACTTTACAAATCCCTGCTTAGG 1035 Query: 494 TTATGTACTACTTAGTTTGAGACTCATTACTCTCTCTGTACGACTGTACTCTAGGAAGGT 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 TTATGTACTACTTAGTTTGAGACTCATTACTCTCTCTGTACGACTGTACTCTAGGAAGGT 1095 Query: 434 AGATACGTAGTTATATTGTGGATTAAAATGTGCCTCTTAATACGCTGAGACCTATCTGTT 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 AGATACGTAGTTATATTGTGGATTAAAATGTGCCTCTTAATACGCTGAGACCTATCTGTT 1155 Query: 374 AGCTAAGAGATTCCTTGTTAGATACTGAGACGTATGAACATATAGGAAACTATACTAAAA 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1156 AGCTAAGAGATTCCTTGTTAGATACTGAGACGTATGAACATATAGGAAACTATACTAAAA 1215 Query: 314 AGTTATAGTTCATATATTCCCTTTGCAATTGATTCTCGGAATCATAATATGTTAT 260 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1216 AGTTATAGTTCATATATTCCCTTTGCAATTGATTCTCGGAATCATAATATGTTGT 1270 >At1g72080 68414.t07627 hypothetical protein Length = 2355 Minus Strand HSPs: Score = 230 (40.6 bits), Expect = 0.063, P = 0.061 Identities = 229/408 (56%), Positives = 230/408 (56%), Strand = Minus / Plus