At5g63050 SYNGENTA 123563
Genomic Sequence (from TAIR)
cacaaccccttttaagtccaatgaaatcaagttgttagttaattcattgtgaaactagagattcaagttttggttccttcaaagatattcgatataaaag agaggacttcaagttttgagaacgtaattacatgtttcacgtcgtggttttcaaaaaaatgattataagaaatgttattttcgtgttgattgtatgattt gaagaaacaaaacatcatgtaaatctaaatgtaaagagcttttttatcttgaaaaaagttgataaaaaagttgtgaaagttctattcaaatgattttttt ttttgttaagactatgttcttcaactcgttatttgactatttaaaatagaaaatcaattgtgatttaataaaaaaaaaaacttaatagtaatttctccga aacgacgacgtttagaggtgttggtattaaaaaacctttgattaaccgcttgcctgcaatctgctctcctatctcttccaatctcctctcctctctatct atccgcgtccccatttcttcttccctctaaaattccaatctttcttattgcttttttttattcaaagcttcaagattttcactagggttctttccctttc tcttattcgataaattctgttcttttctttcgtattctcacggacgaacaaaccccaaggcaacgagctcatgattgaggtccgttcttctgctctttcc ctctcagtttcttcgcagctgttttctaatttgcaatctattttatggatttggggtacttttgttaagggaacaaaacctatcattttccaggtttctt atggttgcgctttagattttatagtttagtgtaatttaatctgatttggggaattgggtgttggataagagtgttttgcagctgagaggattgaaaaatt gaatatttatgatatttaagctcgctaatgaggttctcttacttcggattttgctcagcttcgctcctgtcaagtaatttttgttgtgatctatatatga aatttccttttaatgttttatggtcgctacttgtgatttcatcatctttggaggttacaatcatcttattcaatcctttcttcggcctcagattgtggct tttgagtaaatgattcactgctcagctagagacaATGGTGTTGGTAACCCATAAATTGCAGgtatcttagacatagatctgtaaagtcctaaattctact ttgttttgtgtctctgtaatggtcatgtctgcaaatggttgtaccttccgtttcactcttgtaaagccttcttttacttgccacactagaaatatagatg tttacctcccccttg◄tt◄►ctctcatgt►agGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTGTGTTTAAAGAGACCTGT TACGACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGgtgagtatcccactttacaaatccctgcttaggt tatgtactacttagtttgagactcattactctctctgtacgactgtactctaggaaggtagatacgtagttatattgtggattaaaatgtgcctcttaat acgctgagacctatctgttagctaagagattccttgttagatactgagacgtatgaacatataggaaactatactaaaaagttatagttcatatattccc tttgcaattgattctcggaatcataatatgttgtgaaactcttttgcagTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTAC ATCTTTTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAATAACTCTGTCAAACTATCTTACCGTTCAGATGAT GACGAAAATAATGTGAATGGCTCCCCAAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGCAACCCGCTATTCAGA AACTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTATTCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCA AGAAACTGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCTGGTTTTGGAGTCTAGACGCAGCTATCAAGATTCCG TTGCTGTTATTgtaagtatcagcatcaaagcatctttttcttttgcttgatgaggtagtctagagttagttatcaatagaggaaaatcgactagatgtga acttatattcaaaaactgtccttaggaagatttaagagtgtcacagccacttttttcttttccaagttccttgtatgtgtattgactatactttcacctt gaccttttttgtagTGTTCCAGCTTTCCTAGCTGTTTACGCGATCTGTGGTGCTGAAGTTACAAAGGAATTATCCCCTATGTGGGTGGTTGGCCCCTTGA TCATCGCCCTTTATATAAAAATGTTCCAAGGACTATGTTCCCTTTACGCCTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACCTACCATCGTATTA TCTTGTAGCATACCAATACATTGCCGATGGAAAGCTCAAAGACGACGTTAAAGCTCTAGTGTTTAAACCAGTGGTGGCCATCAAGAACACAGACTACAAA GAGCTCACACGCACGAAGCTGAAACAGTTCCAAGAATGGATCATTGAGAAATACCTGGATTTTGTTGAATCTGTATGGCCTTATTACTGCAGAACTATCA GATTCCTGAAGAGGGCTAACCTGATTTGAagatcttcaacatggaaccctcaaattctgacttctcagggcttctctatgatttctctctgtgctttgtt tacctttttttttttttttcttaattttaggaaggcttttcatgttgtttgttcttatctctatgtatactgataccttttttgaggttttacaatgagt tcttttaatattaagggttatcccttttctccatacttaaaaattatctatacacatataaatcgacaacaacagaagaaataagtgcttaaaggtctct tataaacctctTTAGCTCCGGAAATTTGATGGTAATGTTTCTTCAGTAAAGTACTCCTTTCTGACGGTCTCTGCTGAGCAAAACTTGACcttcacataaa gcaaagtataaaaatccatctagtccagtcctctgaataaccacactatgtagtatatagcaattagaatcgatgcataaaaacatagcaatatggtatg gaag
Border_1 (123563_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCMRCAAGGGGGAGGTAAACATCTA
TATTTCTAGTGTGGCAAGTAAAAGAAGGCTTTACAAGAGTGAAACGGAAGGTACAACCATTTGCAGACATGACCATTACAGAGACACAAAACAAAGTAGA
ATTTAGGACTTTACAGATCTATGTCTAAGATACCTGCAATTTATGGGTTACCAACACCATTGTCTCTAGCTGAGCAGTGAATCATTTACTCAAAAGCCAC
AATCTGAGGCCGAAGAAAGGATTGAATAAGATGATTGTAACCTCCAAAGATGATGAAATCACAAGTAGCGACCATAAAACATTAAAAGGAAATTTCATAT
ATAGATCACAACAAAAATTACTTGACAGGAGCGAAGCTGAGCAAAATCCGAAGTAAGAGAACCTCATTAGCGAGCTTAAATATCATAAATATTCAATTTT
TCAATCCTCTC
| Start of BLAST Alignment: | NT 183 / Intron 2 of 4 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 181 / Intron 2 of 4 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 123563_LB Length: (611 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 2162 2.4e-93 1 At5g57015 68418.t06605 casein kinase, putative similar to... 255 0.0018 1 At1g43830 68414.t04610 gypsy-like retrotransposon family ... 202 0.52 1 At5g19760 68418.t02127 dicarboxylate/tricarboxylate carri... 188 0.96 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Minus Strand HSPs: Score = 2162 (330.4 bits), Expect = 2.4e-93, P = 2.4e-93 Identities = 432/434 (99%), Positives = 434/434 (100%), Strand = Minus / Plus Query: 611 GAGAGGATTGAAAAATTGAATATTTATGATATTTAAGCTCGCTAATGAGGTTCTCTTACT 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 GAGAGGATTGAAAAATTGAATATTTATGATATTTAAGCTCGCTAATGAGGTTCTCTTACT 483 Query: 551 TCGGATTTTGCTCAGCTTCGCTCCTGTCAAGTAATTTTTGTTGTGATCTATATATGAAAT 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 TCGGATTTTGCTCAGCTTCGCTCCTGTCAAGTAATTTTTGTTGTGATCTATATATGAAAT 543 Query: 491 TTCCTTTTAATGTTTTATGGTCGCTACTTGTGATTTCATCATCTTTGGAGGTTACAATCA 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 TTCCTTTTAATGTTTTATGGTCGCTACTTGTGATTTCATCATCTTTGGAGGTTACAATCA 603 Query: 431 TCTTATTCAATCCTTTCTTCGGCCTCAGATTGTGGCTTTTGAGTAAATGATTCACTGCTC 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 604 TCTTATTCAATCCTTTCTTCGGCCTCAGATTGTGGCTTTTGAGTAAATGATTCACTGCTC 663 Query: 371 AGCTAGAGACAATGGTGTTGGTAACCCATAAATTGCAGGTATCTTAGACATAGATCTGTA 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 AGCTAGAGACAATGGTGTTGGTAACCCATAAATTGCAGGTATCTTAGACATAGATCTGTA 723 Query: 311 AAGTCCTAAATTCTACTTTGTTTTGTGTCTCTGTAATGGTCATGTCTGCAAATGGTTGTA 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 AAGTCCTAAATTCTACTTTGTTTTGTGTCTCTGTAATGGTCATGTCTGCAAATGGTTGTA 783 Query: 251 CCTTCCGTTTCACTCTTGTAAAGCCTTCTTTTACTTGCCACACTAGAAATATAGATGTTT 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 CCTTCCGTTTCACTCTTGTAAAGCCTTCTTTTACTTGCCACACTAGAAATATAGATGTTT 843 Query: 191 ACCTCCCCCTTGYK 178 ||||||||||||++ Sbjct: 844 ACCTCCCCCTTGTT 857 >At5g57015 68418.t06605 casein kinase, putative similar to casein kinase I, delta isoform [Arabidopsis thaliana] SWISS-PROT:P42158; contains protein kinase domain, Pfam:PF00069 Length = 3747 Minus Strand HSPs: Score = 255 (44.3 bits), Expect = 0.0018, P = 0.0018 Identities = 175/294 (59%), Positives = 175/294 (59%), Strand = Minus / Plus
Border_2 (123563_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGACGCTTACATAAAGGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTGTGTTTAAAGAGACCTGTTACGACAGTGCACT
TTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGGTGAGTATCCCACTTTACAAATCCCTGCTTAGGTTATGTACTACTTAG
TTTGAGACTCATTACTCTCTCTGTACGACTGTACTCTAGGAAGGTAGATACGTAGTTATATTGTGGATTAAAATGTGCCTCTTAATACGCTGAGACCTAT
CTGTTAGCTAAGAGATTCCTTGTTAGATACTGAGACGTATGAACATATAGGAAACTATACTAAAAAGTTATAGTTCATATATTCCCTTTGCAATTGATTC
TCGGAATCATAATATGTTGTGAAACTCTTTTGCAGTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTTTAAAGGTG
GCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAATAACTTTGTCAAACTATCNTACCGTTCAGGATGATGACGAAAAT
| Start of BLAST Alignment: | NT 183 / Intron 2 of 4 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 192 / Intron 2 of 4 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 123563_LB2 Length: (796 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 2878 1.1e-125 1 At1g42852 68414.t04507 hAT-like transposase family (hobo/... 185 0.9994 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Plus Strand HSPs: Score = 2878 (437.9 bits), Expect = 1.1e-125, P = 1.1e-125 Identities = 582/589 (98%), Positives = 582/589 (98%), Strand = Plus / Plus Query: 208 CTTACATAAAGGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCT 267 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 858 CTCTCATGTAGGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCT 917 Query: 268 TGTGTTTAAAGAGACCTGTTACGACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTAC 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 918 TGTGTTTAAAGAGACCTGTTACGACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTAC 977 Query: 328 GATTGAAGCAAAAATGTTGTTTTAGGTGAGTATCCCACTTTACAAATCCCTGCTTAGGTT 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 978 GATTGAAGCAAAAATGTTGTTTTAGGTGAGTATCCCACTTTACAAATCCCTGCTTAGGTT 1037 Query: 388 ATGTACTACTTAGTTTGAGACTCATTACTCTCTCTGTACGACTGTACTCTAGGAAGGTAG 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 ATGTACTACTTAGTTTGAGACTCATTACTCTCTCTGTACGACTGTACTCTAGGAAGGTAG 1097 Query: 448 ATACGTAGTTATATTGTGGATTAAAATGTGCCTCTTAATACGCTGAGACCTATCTGTTAG 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 ATACGTAGTTATATTGTGGATTAAAATGTGCCTCTTAATACGCTGAGACCTATCTGTTAG 1157 Query: 508 CTAAGAGATTCCTTGTTAGATACTGAGACGTATGAACATATAGGAAACTATACTAAAAAG 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 CTAAGAGATTCCTTGTTAGATACTGAGACGTATGAACATATAGGAAACTATACTAAAAAG 1217 Query: 568 TTATAGTTCATATATTCCCTTTGCAATTGATTCTCGGAATCATAATATGTTGTGAAACTC 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 TTATAGTTCATATATTCCCTTTGCAATTGATTCTCGGAATCATAATATGTTGTGAAACTC 1277 Query: 628 TTTTGCAGTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACA 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278 TTTTGCAGTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACA 1337 Query: 688 TCTTTTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 TCTTTTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTT 1397 Query: 748 ACTAATAACTTTGTCAAACTATCNTACCGTTCAGGATGATGACGAAAAT 796 |||||||||| |||||||||||| |||||||||| |||||||||||||| Sbjct: 1398 ACTAATAACTCTGTCAAACTATCTTACCGTTCAG-ATGATGACGAAAAT 1445 >At1g42852 68414.t04507 hAT-like transposase family (hobo/Ac/Tam3) has a 2.4e-64 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) [Arabidopsis thaliana] Length = 2423 Plus Strand HSPs: Score = 185 (33.8 bits), Expect = 7.4, P = 0.9994 Identities = 173/298 (58%), Positives = 173/298 (58%), Strand = Plus / Plus