At4g13740 SYNGENTA 124146
Genomic Sequence (from TAIR)
tttatttgtatttttttgtattcttctcatcttatattcttatctacgacatagtcaacattataaaactatgtatcaaatattaatttcaaagtaacta caccataatccagttctgttaaacccgtccgttttggtgatataaaacaataattgttttttgtctcgaaccaattcactatataaacatcatatacctc ttcaaggggggttaccaaccaaacagcttgacacgaaattgtctcgaaccaatgaacccaaacaaaaattgtcctggaaatccggatttccggtttactc aattgaaacaaaaaccggataaacctcaccctaaaccctaaccctccgaaacaaacagagagacacaaacccactctcagcgtatataaacagaactcaa gacagagacgctcttaaaccctttcttcttcaacccataccgtttt◄ctttcttcttctattttgtcacttttttcctcgccgacgaATGCAAGGGA►AC CACGACGGTTCGTGGTCTCTACACCCCTCCACCAACAATGGAAGCGGCAGAGCCAACGGAAACATCAACATCAACACCGTTCCCGGTGGAGGATACCTTC CTCAGGCAAATCCTGTCTTTCCCAATTTCAATCAACCCATTAGATACCCAATTCCTCAGTTTCCGGCGAATTTTTACCGCCCTAATTTCCCTGACTTCTC TCTCGGAAACCCTAATTTCCAACCCCATCAAAATCTCAACTTCCTTCATCAACAAATCCCTCACCAATATGGCTCCGCTGCTAATCACTTCCTTCAAAAC CATAACCAAAACAGCTTCTCTTTCCCACCTCAATCTATACCTAATAATGATATCAGTATCTCTCAGAATCACGGAGCTTTCGAAAACTCTTCATTGAAAC GAAGACGACAAGAGGAGGTTGTACAAGTGACTGATGTGGTTCCAAAATCTAATTTTGCTTCCGGTGAGAGTGCTAATAACTCCTTCAGTGTATCTCTACC GATCCCTATAGCAACTGATGATAGTGGTGTGTCTCGAGTCCATGGAGAGAAGTCATCTGGAAAACCCAAGCGCAAAGTTGATGTCTTGCGGATTGATAAG GCTGTTAACAAGACGCGTAAATTATTTGTTGCTGCTGGAGAGAGTGTTTCTTCGACTAGAGTGTCGAGAGCTGTTTTAGAAGAGCTTCAAGCTGATTCTT GGCGTTCCTTGGGTGTGCAAATGCAAGATGTTCCTTCTCTTCGTCAACTTATGGCCATTGAAGGCAAGgtaagcgttgaaattatgtctatatcctgcag agcttctatgttcactgtcaatagcgtatagatatatcttttgatgtcttgtagATCAATGCATTTATTCACTGCTTCGTTGGGGCTAGAAGAATTGTGA CCCTGCATGATTTGGAAGTGGCAATATGCCGGAACGAGTTTGTTGATTCTTTCGATGATCTGGAATTGGGACCTTTGCTGCAGCATCCACTGGTTTTGCT ATATGACAGAAGATGTTAAGCTCGATGAATTTCTGAATTTTGTTGCAAGTCAAAAGTCAGTTACAAGCAAGGAAAAGCTTGGTGTGCGTATTCAGAGCTT GTATTTTCCATCGATATCCAGTTCTACTGGACCAGTTAAGATCACTAGTGAGGAGATAATATCATTTCTTGATAGCTATCTGCACACTTGCGgtatgata ttgttcttttttggattatctaaacttggttatgagttaaataattttgatattacagtaaggttggtattaatgttggatctggttgttcttagtatga actgcattagctgattttatgtgatttaatgcatttttatagGATGTATGTATCTTTCATTCTAGACGCGAAGAGACAAGAAGGTGAAACACTGAAAGTC TTACTGACTGAGCTGCATCAGAAGTATCACATCCCCTCATCAAAGAAACAACAGCGAGATAAATCTCTAACTGTCTCTGAGCGAGCTGACTCATTTGCTT TACATCATAAGGATTATTGTGGCAAGCATATAAGATTTGATTCTTCAAGCTCAGATGAAAATGATAATGTTTATGAGGTTAGAAATCTTAATAGTTCTGA CCATATCAATAGTTGTCCATATCCATCTGTTGCGGAAGAGATGAAGCGTCTTGGGGGCTCCAATAAGAAAAGGAAGGGTGAAAGACGTAATCATGAAAAA TCTGATTCCTCCAAACTGCTTAGAAAATCCCCCTCTAAATTACAAGGACATGCGAAACAAGAGATACCTAAATTGGCTGATGATTCTGAAGCTAAGAAGG TTTTCAGTGTCGATGAGGCTGATTTTACACTTTCTGAAGGAGATTTAAGATTGTTCATTTCAACTTGGAAGGACACATGTAAAGAGCTAAGCATTTCAAC Ggtaagttcatgttgagattgtatgactgttttaatctgagagtgaattatcttaagtgaggtgtgagggggcttcatgtttgtttattttctaatactc tcttttattattgtagTTTGTCGAGAAAATGTTGTCTTTTTACAACTTGGGGGGCTCTGAAGGAAGAGCTCAGATTAAAAGAGCTAAAGCGATGTCATCA TTTCCGTTTGTTGGATTACTAAATGTCGCTGTGAGTGGTCATACTACTTTTGTTTAAagtgttttgcatttttcttgttttcttgctttcattaattcaa ttgaagaattttgtcaaaaatctctgttaatgcctcctatttacttttgttcatgccattcacattaagtgtacttggaggtcaaatcctcctaatctga cgtcttttttttctttgcaacacttgttttttctctctctgtgaaatagctgttttctggtatctcctaatttggatagaacagatggatgtttggttac tactttttttttttaatccatcaaatgtttatgaaaaataactgcacatatattttcaaagtgaaggatgcgagattacgtttgctatatatttacatcc atactcattttttgcttcacctttccgtttttactttttttttctttacccatttttttcccctcttattttgctttgtgttgcttttcccagtttgaaa ag
Border_1 (124146_RB)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCKCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGNGTTTGNAAAAACGGTATGGGTTGAAGAAGAAAGGGTANNAAGAGCGTCTCTGNCTTGAGTTCTGATTATATAC
GCTNAGAGTGGGTTTGCGNCTCTCTGTTNGCTACGGAGGGNTAGGGGTTAGGGCGAGGTTTATCCGGTTTTTGCTTCAATTGAGTAAACCGGAAATCCGG
ATTTCCAGGACAAT
| Start of BLAST Alignment: | NT < 40 / Upstream |
| First 15 bp Perfect Match: | NT < 40 / Upstream |
BLAST Details: Query Sequence: 124146_RB Length: (414 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F18A5 67117 773 9.9e-29 1 T2P3 68413 568 1.8e-19 1 T6C20 68339 568 1.8e-19 1 T28G19 68291 568 1.8e-19 1 F18A5 67117 Length = 118,718 Minus Strand HSPs: Score = 773 (122.0 bits), Expect = 9.9e-29, P = 9.9e-29 Identities = 165/180 (91%), Positives = 165/180 (91%), Strand = Minus / Plus Query: 414 ATTGTCCTGGAAATCCGGATTTCCGGTTTACTCAATTGAAGCAAAAACCGGATAAACCTC 355 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 45988 ATTGTCCTGGAAATCCGGATTTCCGGTTTACTCAATTGAAACAAAAACCGGATAAACCTC 46047 Query: 354 GCCCTAACCCCTANCCCTCCGTAGCNAACAGAGAGNCGCAAACCCACTCTNAGCGTATAT 295 |||||| ||||| ||||||| | | ||||||||| | |||||||||||| ||||||||| Sbjct: 46048 ACCCTAAACCCTAACCCTCCGAAACAAACAGAGAGACACAAACCCACTCTCAGCGTATAT 46107 Query: 294 AATCAGAACTCAAGNCAGAGACGCTCTTNNTACCCTTTCTTCTTCAACCCATACCGTTTT 235 || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 46108 AAACAGAACTCAAGACAGAGACGCTCTTAA-ACCCTTTCTTCTTCAACCCATACCGTTTT 46166 T2P3 68413 Length = 79,192 Minus Strand HSPs: Score = 568 (91.3 bits), Expect = 1.8e-19, P = 1.8e-19 Identities = 129/145 (88%), Positives = 130/145 (89%), Strand = Minus / Plus
Border_2 (124146_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACGACGGTT
CGTGGTCTCTACACCCCTCCACCAACAATGGAAGCGGCAGAGCCAACGGAAACATCAACATCAACACCGTTCCCGGTGGAGGATACCTTCCTCAGGCAAA
TCCTGTCTTTCCCAATTTCAATCAACCCATTAGATACCCAATTCCTCAGTTTCCGGCGAATTTTTACCGCCCTAATTTCCCTGACTTCTCTCTCGGAAAC
CCTAATTTCCAACCCCATCAAAATCTCAACTTCCTTCATCAACAAATCCCTCACCAATATGGCTCCGCTGCTAATCACTTCCTTCAAAACCATAACCAAA
ACAGCTTCTCTTTCCCACCTCAATCTATACCTAATAATGATATCAGTATCTCTCAGAATCACGGAGCTTTCGAAAACTCTTCATCT
| Start of BLAST Alignment: | NT 10 / Exon 1 of 4 |
| First 15 bp Perfect Match: | NT 10 / Exon 1 of 4 |
BLAST Details: Query Sequence: 124146_LB Length: (586 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g13740 68417.t02023 expressed protein 1980 4.6e-85 1 At1g08300 68414.t00815 expressed protein 197 0.65 1 At5g41730 68418.t04724 protein kinase family protein cont... 194 0.78 1 >At4g13740 68417.t02023 expressed protein Length = 2179 Plus Strand HSPs: Score = 1980 (303.1 bits), Expect = 4.6e-85, P = 4.6e-85 Identities = 396/396 (100%), Positives = 396/396 (100%), Strand = Plus / Plus Query: 189 ACCACGACGGTTCGTGGTCTCTACACCCCTCCACCAACAATGGAAGCGGCAGAGCCAACG 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14 ACCACGACGGTTCGTGGTCTCTACACCCCTCCACCAACAATGGAAGCGGCAGAGCCAACG 73 Query: 249 GAAACATCAACATCAACACCGTTCCCGGTGGAGGATACCTTCCTCAGGCAAATCCTGTCT 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 GAAACATCAACATCAACACCGTTCCCGGTGGAGGATACCTTCCTCAGGCAAATCCTGTCT 133 Query: 309 TTCCCAATTTCAATCAACCCATTAGATACCCAATTCCTCAGTTTCCGGCGAATTTTTACC 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 TTCCCAATTTCAATCAACCCATTAGATACCCAATTCCTCAGTTTCCGGCGAATTTTTACC 193 Query: 369 GCCCTAATTTCCCTGACTTCTCTCTCGGAAACCCTAATTTCCAACCCCATCAAAATCTCA 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 GCCCTAATTTCCCTGACTTCTCTCTCGGAAACCCTAATTTCCAACCCCATCAAAATCTCA 253 Query: 429 ACTTCCTTCATCAACAAATCCCTCACCAATATGGCTCCGCTGCTAATCACTTCCTTCAAA 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 ACTTCCTTCATCAACAAATCCCTCACCAATATGGCTCCGCTGCTAATCACTTCCTTCAAA 313 Query: 489 ACCATAACCAAAACAGCTTCTCTTTCCCACCTCAATCTATACCTAATAATGATATCAGTA 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 ACCATAACCAAAACAGCTTCTCTTTCCCACCTCAATCTATACCTAATAATGATATCAGTA 373 Query: 549 TCTCTCAGAATCACGGAGCTTTCGAAAACTCTTCAT 584 |||||||||||||||||||||||||||||||||||| Sbjct: 374 TCTCTCAGAATCACGGAGCTTTCGAAAACTCTTCAT 409 >At1g08300 68414.t00815 expressed protein Length = 2048 Plus Strand HSPs: Score = 197 (35.6 bits), Expect = 1.1, P = 0.65 Identities = 105/169 (62%), Positives = 105/169 (62%), Strand = Plus / Plus