At3g62910 SYNGENTA 125189
Genomic Sequence (from TAIR)
AATCGACATcgtcgccggaggaagagaagaaattgagtaccgcgattcaattgatttattatttaacaaaaactcaacttcgcgacgaatcagttttgac ttcacatatattgggccataggcccatagagttactagcaggtgtaagttacaccgtgtaaccgagaatgtaaattagtatgggctaaaggcccaataaa taaaagggtttcttctataattggcgaggatagttttgtcctaatagccaaacacgtctcatcatctaaactaggcttccttatccagcaactcccgcgc cactcgtcttcttccacctctctctctagagtctagacaATGAATAGCTCGATGACGACGAGTCCAACGGCTCGAGCCTTCCTTCATCTTCACTCGTCAC CATTCACTTTACGTTCGAGAAAGTCACCGTCTGGAGTTTGTCTAGTCTCGTGGCCGCCTTCTCGGTCTCGCAGGACTCGACGACTCGTTTGTATGGCCgt aagtgattctagttctcccaatgttggatttttttttcaaaagtttcagaattgttcgatgattttgtctgttgaaacatttagGAACCTTACCTCATTA GGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCGgtttgttcctacacttattccattaatggttaaggtttgtttcttaatctcattcttaa gagttttgaatgatttgtagGTGAAACTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATGTCGGAGCTTGACGA GgtatttgcacattcttttagtgttcaaaatttgcagcttttttcggggtttcttaacattgaattcaattttagGTTGTAACAGTCTTCAGAAGATTCA AGGACTGTGAGAAGCAGTTACTAGAAAGCAAAGgtcccttcaagtctcctcctttcttttactttgctttgattctgttcctcggaagctggttatgatt tactgattggtttattgcttcagTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATAGGAAGTGAAATCAACTCGCTCACTAAAGAA ATTGAGGAGCTTGAAAAACAACTTAAGgtttagagccttggttccatagctgacttattcggcagctgaaaatcgaatgttgctcattttaaaaatttga ttctgatactcaactcgtaacattgtgttggcttgtgtcagGTGTTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTTGAAGgtaactg actaaactatatgtcgacaagtagtatcatttgtctacactggccttttttcttgaaaaactgccttttgctcggacttcccgccattgttttacctatc tacctctggacgagtctgaaatcttagttccttccgcagTTAGAGCAGGAACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTgtaggtacatg ctttccttgatttcttctgatcctctatctgattttaatgccttccgatagttcaccgttttgtttcagtcttatttcttaaaaaactttcaaattttat tgttcctatatttcatggctaagagaagcaagtgcaataattaaaaacttcagatcctaccatgaatcagtatgctttgcattattcttttgcttgcagG TGCGGATGTATCAGAGGTACAGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGgtgagatgctctctgtgttttgttttggcatttaa ggagtgtgtaatgaaaatggcagtagagcataacaacttagagacatgttctcaccagtatagctttttaatcttcctacttttataagGCTGAACATGG AGGTTACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTATGAATCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACA GAAACACAGGGTCGTGTACACACTTCTACAGCAACTGTAGCCATCATGCCAGAGgtaaactagctttcgcatgttccatttttcgatattctgattgata attggtaaccagtccaaaactgtcatctctgctttgttttttttgtcattttagGCTGATGAAGTGGAAGTGGTGATTGACCCAAAGGACATTGAACTTA CATCTGCAAGATCTGGCGGCGCTGGAGgt►tatgctaaagaaattcgctttctgtttctctcacatttcacttgctaataatac►tgaaaagaggtcttg gtgcagGCCAAAATGTGAACAAGGTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAG GAATAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTgtaagcaacattcaaggagcaaactctctactcttcttctcctctatcaagtcccacctta gtctttttttgttgaaacattatatgtctatatatagGTATGAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGgtcca cttcattttattatccccatagtctttctaaactcaaggtcatcatcaaatattcatcttattctgctctatgtcgattcttgcggaaacagGTTGGGAC TGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGgtaatacacggatccagagccttgctttgaaaacttgatggattctgttttgcttatgat gtctgaaaattacagGACAGTAGAGTGACTGATCATAGGCTAAAGATGAACTTTGCGCTTACAACATTTCTTGACGGTGCTTTAGAGGACGCAGTGCAGg tcctaaacactaaaccttaaactttttcttacgtttgtattagttaatgtgaatcttgaagaatgtttgcattattcttattgcagGCTTGTGCTGCTTT GGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTAGCTGCTTCTTCTGCTACTTCTGGATAAatcctcaaactatactccaaggaaaactttgta gttgtacacacatcataattataagacttttattcattcatatatagctaagcatatgataatgcaatttagcaaatattgatgggcatacctgatggga ccaaggccaaaccgagttagccacactgaaatactggaaaaacatatttatcaaccaattcatatttatatattcaaacctttttaaaaaacaagatttt tgagagttattacttttgcggaaaacatttgacaactatttcaaaatgttgtaaattaaataaagatgttatgcaaaaaaatgttaaaggaaatggagtc aaacttaaagaaaacagagacgaatcctctctgcagtttttatggaattcaaagtttggcactaagcaaacatcctgcaagtctgaagcctaatctgacc at
Border_1 (125189_LBD)
TTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAA
TTTGTTTACACCACAATATATCCTGACACAAATTGACAAGATCTTGAAACCGAATTTCCATGGCATATGCTAGCATGCATAAACTGAAGGTTTAAGTTGT
CGGTTTGTTGACTTGTTGTCATGTGGAGACAGAATTTGAAAAGAGGTCTTGGTGCAGGCCAAAATGTGAACAAGGTGGAGACCGGCTATAGATCTATTCC
ACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATAAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAAGCAA
CATTCAAGGAGCAAACTCTCTACTCTTCTTCTCCTCTCCRWCAARGCCCACCTTAGTCTTTTTTTTGNTGAACATTATATGTCTATATATTAGGGTATGA
AATAAAAGTAAGGGGAACNACAANGAGAAGATTANGGAATGAAAAGGAAATCTTCANGTCCACTTTCATTTTATTATTCCCCATAGTCTTTTCTTAAACT
CCAAGG
| Start of BLAST Alignment: | NT 1890 / Exon 10 of 15 |
| First 15 bp Perfect Match: | NT 1944 / Intron 10 of 14 |
BLAST Details: Query Sequence: 125189_LBD Length: (606 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g62910 68416.t06528 peptide chain release factor, puta... 1329 7.6e-55 1 >At3g62910 68416.t06528 peptide chain release factor, putative similar to peptide chain release factor 1 [Escherichia coli] GI:147567; contains Pfam profiles PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain Length = 2873 Plus Strand HSPs: Score = 1329 (205.5 bits), Expect = 7.6e-55, P = 7.6e-55 Identities = 324/377 (85%), Positives = 327/377 (86%), Strand = Plus / Plus Query: 180 TAAACTGAAGGTTTAAGTTGTCGGTTTGT-TGACTTGTTGTCATGTGGAGACAGAATT-T 237 || || ||| | | | || |||| | | || | | ||| || | | ||| | Sbjct: 1932 TATGCTAAAGAAATTCGCTTTCTGTTTCTCTCACAT--T-TCACTTGCT-A-ATAATACT 1986 Query: 238 GAAAAGAGGTCTTGGTGCAGGCCAAAATGTGAACAAGGTGGAGACCGGCTATAGATCTAT 297 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1987 GAAAAGAGGTCTTGGTGCAGGCCAAAATGTGAACAAGGTGGAGAC-GGCTATAGATCTAT 2045 Query: 298 TCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATA 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2046 TCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATA 2105 Query: 358 AAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAAGCAACATTCAAGGAGCAAACT 417 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2106 A-GGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAAGCAACATTCAAGGAGCAAACT 2164 Query: 418 CTCTACTCTTCTTCTCCTCTCCRWCAARGCCCACCTTAGTCNNNNNNNNGNTGAA-CATT 476 |||||||||||||||||||| ++|||+ |||||||||||| | |||| |||| Sbjct: 2165 CTCTACTCTTCTTCTCCTCT--ATCAAGTCCCACCTTAGTCTTTTTTT-GTTGAAACATT 2221 Query: 477 ATATGTCTATATATTAGGGTATGAAATAAAAGTAAGGGGAACNACAANGAGAAGATTANG 536 |||||||||||||| ||| ||||||||||||||||||| ||| |||| |||||||| | | Sbjct: 2222 ATATGTCTATATAT-AGG-TATGAAATAAAAGTAAGGG-AACAACAA-GAGAAGAT-AAG 2276 Query: 537 GAATGAAAAGGAAATCT 553 |||||||| |||||||| Sbjct: 2277 GAATGAAA-GGAAATCT 2292