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At3g62910 SYNGENTA 125189

Genomic Sequence (from TAIR)
AATCGACATcgtcgccggaggaagagaagaaattgagtaccgcgattcaattgatttattatttaacaaaaactcaacttcgcgacgaatcagttttgac
ttcacatatattgggccataggcccatagagttactagcaggtgtaagttacaccgtgtaaccgagaatgtaaattagtatgggctaaaggcccaataaa
taaaagggtttcttctataattggcgaggatagttttgtcctaatagccaaacacgtctcatcatctaaactaggcttccttatccagcaactcccgcgc
cactcgtcttcttccacctctctctctagagtctagacaATGAATAGCTCGATGACGACGAGTCCAACGGCTCGAGCCTTCCTTCATCTTCACTCGTCAC
CATTCACTTTACGTTCGAGAAAGTCACCGTCTGGAGTTTGTCTAGTCTCGTGGCCGCCTTCTCGGTCTCGCAGGACTCGACGACTCGTTTGTATGGCCgt
aagtgattctagttctcccaatgttggatttttttttcaaaagtttcagaattgttcgatgattttgtctgttgaaacatttagGAACCTTACCTCATTA
GGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCGgtttgttcctacacttattccattaatggttaaggtttgtttcttaatctcattcttaa
gagttttgaatgatttgtagGTGAAACTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATGTCGGAGCTTGACGA
GgtatttgcacattcttttagtgttcaaaatttgcagcttttttcggggtttcttaacattgaattcaattttagGTTGTAACAGTCTTCAGAAGATTCA
AGGACTGTGAGAAGCAGTTACTAGAAAGCAAAGgtcccttcaagtctcctcctttcttttactttgctttgattctgttcctcggaagctggttatgatt
tactgattggtttattgcttcagTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATAGGAAGTGAAATCAACTCGCTCACTAAAGAA
ATTGAGGAGCTTGAAAAACAACTTAAGgtttagagccttggttccatagctgacttattcggcagctgaaaatcgaatgttgctcattttaaaaatttga
ttctgatactcaactcgtaacattgtgttggcttgtgtcagGTGTTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTTGAAGgtaactg
actaaactatatgtcgacaagtagtatcatttgtctacactggccttttttcttgaaaaactgccttttgctcggacttcccgccattgttttacctatc
tacctctggacgagtctgaaatcttagttccttccgcagTTAGAGCAGGAACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTgtaggtacatg
ctttccttgatttcttctgatcctctatctgattttaatgccttccgatagttcaccgttttgtttcagtcttatttcttaaaaaactttcaaattttat
tgttcctatatttcatggctaagagaagcaagtgcaataattaaaaacttcagatcctaccatgaatcagtatgctttgcattattcttttgcttgcagG
TGCGGATGTATCAGAGGTACAGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGgtgagatgctctctgtgttttgttttggcatttaa
ggagtgtgtaatgaaaatggcagtagagcataacaacttagagacatgttctcaccagtatagctttttaatcttcctacttttataagGCTGAACATGG
AGGTTACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTATGAATCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACA
GAAACACAGGGTCGTGTACACACTTCTACAGCAACTGTAGCCATCATGCCAGAGgtaaactagctttcgcatgttccatttttcgatattctgattgata
attggtaaccagtccaaaactgtcatctctgctttgttttttttgtcattttagGCTGATGAAGTGGAAGTGGTGATTGACCCAAAGGACATTGAACTTA
CATCTGCAAGATCTGGCGGCGCTGGAGgttatgctaaagaaattcgctttctgtttctctcacatttcacttgctaataatactgaaaagaggtcttg
gtgcagGCCAAAATGTGAACAAGGTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAG
GAATAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTgtaagcaacattcaaggagcaaactctctactcttcttctcctctatcaagtcccacctta
gtctttttttgttgaaacattatatgtctatatatagGTATGAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGgtcca
cttcattttattatccccatagtctttctaaactcaaggtcatcatcaaatattcatcttattctgctctatgtcgattcttgcggaaacagGTTGGGAC
TGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGgtaatacacggatccagagccttgctttgaaaacttgatggattctgttttgcttatgat
gtctgaaaattacagGACAGTAGAGTGACTGATCATAGGCTAAAGATGAACTTTGCGCTTACAACATTTCTTGACGGTGCTTTAGAGGACGCAGTGCAGg
tcctaaacactaaaccttaaactttttcttacgtttgtattagttaatgtgaatcttgaagaatgtttgcattattcttattgcagGCTTGTGCTGCTTT
GGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTAGCTGCTTCTTCTGCTACTTCTGGATAAatcctcaaactatactccaaggaaaactttgta
gttgtacacacatcataattataagacttttattcattcatatatagctaagcatatgataatgcaatttagcaaatattgatgggcatacctgatggga
ccaaggccaaaccgagttagccacactgaaatactggaaaaacatatttatcaaccaattcatatttatatattcaaacctttttaaaaaacaagatttt
tgagagttattacttttgcggaaaacatttgacaactatttcaaaatgttgtaaattaaataaagatgttatgcaaaaaaatgttaaaggaaatggagtc
aaacttaaagaaaacagagacgaatcctctctgcagtttttatggaattcaaagtttggcactaagcaaacatcctgcaagtctgaagcctaatctgacc
at

Border_1 (125189_LBD)

TTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAA
TTTGTTTACACCACAATATATCCTGACACAAATTGACAAGATCTTGAAACCGAATTTCCATGGCATATGCTAGCATGCATAAACTGAAGGTTTAAGTTGT
CGGTTTGTTGACTTGTTGTCATGTGGAGACAGAATTTGAAAAGAGGTCTTGGTGCAGGCCAAAATGTGAACAAGGTGGAGACCGGCTATAGATCTATTCC
ACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATAAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAAGCAA
CATTCAAGGAGCAAACTCTCTACTCTTCTTCTCCTCTCCRWCAARGCCCACCTTAGTCTTTTTTTTGNTGAACATTATATGTCTATATATTAGGGTATGA
AATAAAAGTAAGGGGAACNACAANGAGAAGATTANGGAATGAAAAGGAAATCTTCANGTCCACTTTCATTTTATTATTCCCCATAGTCTTTTCTTAAACT
CCAAGG

Start of BLAST Alignment:NT 1890 / Exon 10 of 15
First 15 bp Perfect Match:NT 1944 / Intron 10 of 14
BLAST Details:
Query Sequence: 125189_LBD 
Length: (606 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g62910 68416.t06528 peptide chain release factor, puta...  1329  7.6e-55   1


>At3g62910 68416.t06528 peptide chain release factor, putative similar to
           peptide chain release factor 1 [Escherichia coli] GI:147567;
           contains Pfam profiles PF00472: Peptidyl-tRNA hydrolase domain,
           PF03462: PCRF domain
        Length = 2873

  Plus Strand HSPs:

 Score = 1329 (205.5 bits), Expect = 7.6e-55, P = 7.6e-55
 Identities = 324/377 (85%), Positives = 327/377 (86%), Strand = Plus / Plus

Query:   180 TAAACTGAAGGTTTAAGTTGTCGGTTTGT-TGACTTGTTGTCATGTGGAGACAGAATT-T 237
             ||  || |||   |  | | || |||| | | || |  | |||  ||   | | |||  |
Sbjct:  1932 TATGCTAAAGAAATTCGCTTTCTGTTTCTCTCACAT--T-TCACTTGCT-A-ATAATACT 1986

Query:   238 GAAAAGAGGTCTTGGTGCAGGCCAAAATGTGAACAAGGTGGAGACCGGCTATAGATCTAT 297
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct:  1987 GAAAAGAGGTCTTGGTGCAGGCCAAAATGTGAACAAGGTGGAGAC-GGCTATAGATCTAT 2045

Query:   298 TCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATA 357
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2046 TCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAAGAAAGGACCCAGATTAGGAATA 2105

Query:   358 AAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAAGCAACATTCAAGGAGCAAACT 417
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2106 A-GGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAAGCAACATTCAAGGAGCAAACT 2164

Query:   418 CTCTACTCTTCTTCTCCTCTCCRWCAARGCCCACCTTAGTCNNNNNNNNGNTGAA-CATT 476
             ||||||||||||||||||||  ++|||+ ||||||||||||        | |||| ||||
Sbjct:  2165 CTCTACTCTTCTTCTCCTCT--ATCAAGTCCCACCTTAGTCTTTTTTT-GTTGAAACATT 2221

Query:   477 ATATGTCTATATATTAGGGTATGAAATAAAAGTAAGGGGAACNACAANGAGAAGATTANG 536
             |||||||||||||| ||| ||||||||||||||||||| ||| |||| |||||||| | |
Sbjct:  2222 ATATGTCTATATAT-AGG-TATGAAATAAAAGTAAGGG-AACAACAA-GAGAAGAT-AAG 2276

Query:   537 GAATGAAAAGGAAATCT 553
             |||||||| ||||||||
Sbjct:  2277 GAATGAAA-GGAAATCT 2292