At3g54660 SYNGENTA 125807
Genomic Sequence (from TAIR)
acatacgttgataacacaaatcgtataactttctaacggtacagaaaatagtaaaccgtacaaaaataataaaaaagggtaagatgtagaagtataaaac taatagtacaaattaaaagattttggttccacttgtatgtataagtgattacatcaaaatggtattactaagtcatcatttagatttgatgaagtttgta ttcgtgtcataaaccgggcgtaggtggagttattgtcagtttggtagcgttttacgaccacacataaaaacatgtttataaattgttaaaaaacaataag acatgtcataaatctaaatgccacaagtagaattatcgaaataaagcttttacataaatacacacacccaaactaaaaaagaaaaaaaaaagaaagagag agagaga►agaagaatcgtggagATGGCTTCGACCC►CGAAGCTTACCAGTACAATTTCATCATCTTCTCCATCTCTTCAATTCCTCTGCAAAAAACTCC CAATCGCAATTCATCTACCATCATCTTCTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCCGTATCGCCCTACT CTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCAGTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACT ATCGGTGCCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGTTTGCGAGCTTCCTTTTTCCACTATCTCTTCCG ATACTGCTGGAGGCGTTGGAGGAACgtaagatttcttccttcttgtggcttatatcgatagctagtgaatttgactttagtagtagctataccagaattt gaagcatttgcttgatgatttatggtttgattgtgttgtctactcatttttggttattttgcagGTGTGTATTGAGAGGATGTGTACCAAAGAAGTTACT TGTGTATGCATCCAAATACAGTCATGAGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGACTACTTTGATTGCT AACAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATATACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGgtatgccgag gctcggtgtttatatagttcatgagttaacctctatgtattgatttgagcttgagtatgtattttatatgtgtagGTTATAGACCCACACACTGTTGATG TAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGACGTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGA TGCCGCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGT GAAGTTCATGTATTTATAAGGCAAAAGAAGGTGCTGAGGGGATTTGATGAAGATgtaagtaaaaaattgagaatgacttttgctgctttcatttatccgt ctggatattttctaattgtaattgttattcttgtttcagGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAAT CCCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCG CAAGCCCAACACAAAGgtatagtgtgatttttattattttccaaaggatgtttataaaatgaaaactggtagcaaagttcatcctttaataatttgtcta agataaactgaccactgctgccccttgtttatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacagAACTTAGGGTTGGAGA ATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGgtatgatccagtgttttacctagtttttttgtcacttaggatttctattattgcattgtgca cagttctcttgttatacctggttacttcttgtgattgtgctccatgtttccactttttttttgtaagGTTGACGAATATTCACAGACATCTGTTCCATCC ATCTGGGCTGTTGGGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCAA CAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtcttac atgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactagAGCTGTTCCCTGCGCCGTT TTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGgtaagtaggatgatttgtcaaaaatatggtttatcatgcatgccactacatagaa atattaactacgtgtttgcagGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGACTTCCAG ACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTGTTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGgtttcatt ttttaacatgattggtattctctgaaaagtaatcacggaaaacatatatgattgaatatgaattttattttacaatttttcagGGATTTGGGGTTGCAGT TAAAGCTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGGAGTTTGTCACTATGAGGGCTCCAACCAGGAAATTC CGCAAAGACTCCTCTGAGgtttgtttgtgaacagtcaaaacttatccatctagttatttctcgtggttttgcaacatgggaaaatgattggaactgagtg agatgtgtatgtccaatttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGagaaggttgcaaaaaagattgtatttacggc attggagccccctgataaggtattcattcaccagtttccgaagtattggtcctaattcctaaaattagaaaagacatgcaatgcattagctcataccatg cttaagtaagatgtcaattagggccaaagctttgtttctgcccaccccggaaaaatagggtagactagaattctcctccataacggtgtttgatatttga cttgcatgtttgcaggagaacattgtgtctgtgaagaagaagcttttcttttggcagagaatattttttcataatgtcgtgtgaagatatgatcgctgtc ctgcaatacttttgatcgtttgacacacgaccaaattcctcgagagagagaggttgtaactattccgaaagagctctaaaactgaagctttcagttcttg tgacatcataatgaaggctgtatagatataacagtttcgagttttatttggatttgtagtatttttgttttctattgtgttgaacttgtctctttgaagt caccacgggagacctcatatcagcatcgttgcgaatcaaatgaggttttgagttttgacaagaaattcaacacgatcaccaaatccttgagtcattatca tattcagatttcagagtctcctaccataatcatatttatggttcgactgtacattattactgtttaaaattgatttgatttttgaaaagttaaaaactaa tagttgactaaaaaattcataaacaaatatatactttttaaagagatacgttttgattaataacaaaaaggaaatatatacattaagtattataattaat atacttatataactaaaaatcactattataagtaacaatatctctaaaactttgaatggccattaaatttttcaaaaatagatagaagaaagaatttttt taaaaaagatatatccaagagatttccaactatgataaagcaaatatgtcataattatatttattggcttatcgcgacacgatttccagattcttattat ta
Border_1 (125807_RB)
AGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACA
GCTATGACCATGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTT
CAGTTTATGCATGCTAGCATATGCCATGGAAACTATCAGTGTTTGACGCTTTACAACTGTACAATTTTAC:GGTTATACTATACAAC:TGTATAGTGGAA
TTGTGACACACAATTCGGGGTCGAAGCTTACCAGTACAATTTCATCATCTTCTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCT
ACCATCATCTTCTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTGTTCTCTCCGTCCCCGTATCGCCCTACTCTCAAACCACCGCTAT
TACCACTCTCGCCGGTTTTCTGTTTGTGCCAGTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTGCCGGAAGCG
GCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGTTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGGGAGGCG
TTGGAGGAACGTAAGATTTCTTCCTTCTTGTGGCTTATATCGATAGCTAGTGAATTTGACTTTAGTAGTAGCTATACCAGAATTTGAAGCATTTGCTTGA
TGATTTATGGTTTGATTGGGGTTGTCTACTCATTTTTTGGGTATTTTGCAAG
Start of BLAST Alignment: | NT < 15 / 5’ UTR |
First 15 bp Perfect Match: | NT 13 / Exon 1 of 10 |
BLAST Details: Query Sequence: 125807_RB Length: (850 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54660 68416.t05607 gluthatione reductase, chloroplast... 2581 2.1e-112 1 At3g24170 68416.t02736 glutathione reductase, putative id... 184 0.023 2 At1g66180 68414.t06888 aspartyl protease family protein c... 222 0.13 1 At3g57400 68416.t05916 expressed protein 219 0.18 1 >At3g54660 68416.t05607 gluthatione reductase, chloroplast nearly identical to SP|P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 Length = 3438 Plus Strand HSPs: Score = 2581 (393.3 bits), Expect = 2.1e-112, P = 2.1e-112 Identities = 539/560 (96%), Positives = 539/560 (96%), Strand = Plus / Plus Query: 292 AGTGGAATTGTGACACACAA-TTCGGGGTCGAAGCTTACCAGTACAATTTCATCATCTTC 350 || |||| ||| | | |||| ||||||||||||||||||||||||||||||| Sbjct: 68 AGAAGAATCGTGG-AGATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTTC 126 Query: 351 TCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCTACCATCATCTTC 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 TCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCTACCATCATCTTC 186 Query: 411 TTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTGTTCTCTCCGTCCCCG 470 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 187 TTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCCG 246 Query: 471 TATCGCCCTACTCTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCAG 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 TATCGCCCTACTCTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCAG 306 Query: 531 TACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTGC 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 TACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTGC 366 Query: 591 CGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGT 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 CGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGT 426 Query: 651 TTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGGGAGGCGTTGGAGGAACGT 710 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 427 TTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGG-AGGCGTTGGAGGAACGT 485 Query: 711 AAGATTTCTTCCTTCTTGTGGCTTATATCGATAGCTAGTGAATTTGACTTTAGTAGTAGC 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 AAGATTTCTTCCTTCTTGTGGCTTATATCGATAGCTAGTGAATTTGACTTTAGTAGTAGC 545 Query: 771 TATACCAGAATTTGAAGCATTTGCTTGATGATTTATGGTTTGATTGGGGTTGTCTACTCA 830 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 546 TATACCAGAATTTGAAGCATTTGCTTGATGATTTATGGTTTGATTGTG-TTGTCTACTCA 604 Query: 831 TTTTTTGGGTATTTTGCAAG 850 ||||| || ||||||||| | Sbjct: 605 TTTTT-GGTTATTTTGCAGG 623 >At3g24170 68416.t02736 glutathione reductase, putative identical to GB:P48641 from [Arabidopsis thaliana] Length = 5000 Plus Strand HSPs: Score = 184 (33.7 bits), Expect = 0.024, Sum P(2) = 0.023 Identities = 92/152 (60%), Positives = 92/152 (60%), Strand = Plus / Plus