At3g12670 SYNGENTA 126850
Genomic Sequence (from TAIR)
gtctggagcagaaaaataaatttaccatggttttgaaatttaccgtttcagtccctttttattttattttcttactcaagcccaatgttgatgtattatt ttgagattaaaaaacttttgaccaaataaaaaaactattttgatttgctttcaatttgggtttaaataagagtgagggtctcgcaggttagcttataagc cgccgccttgaaaatccagaaggccatttttgttggtgaaaggtagaattcgtaaatttcttctgctcactttattgtttcgactcatacccgataatct cttctatgtttggtagagatatcttctcaaagtcttatctttccttaccgtgttctgtgttttttgatgatttaggtgaagaagaagaagcagagacaaa aacgattATGAAGTACGTTTTGGTGACAGGAGGAGTGGTGAGTGGTCTTGGCAAAGGTGTCACTGCTAGTAGCATTGGACTTCTCCTTCAAGCATGTGGT CTTCGTGTCACTTCCATTAAAATTGgtgagattcttgtctatctggattgcatgcaacactctgtattattggtcacccgccaaaaaaagtcacctttta ttgtgtaacggcttgtattgtgaagccaatttaagtgaatttcgtagctatgagatccttttttcacatttacattccttgtatgtagATCCTTATCTTA ACACTGATGCTGGAACAATGTCTCCGTTTGAGCATGGAGAAGTATTTGTATTGGATGATGGTGGAGAGgtatgtcatattgtgatttttgatgtattttc taatcatctcaggtattgttcctcaaacttgatgcattgtgacccctttcagGTGGATTTGGACCTTGGAAACTATGAACGATTTTTAGACAGTACATTG ACCCGTGACAACAATATAACTACTGGAAAGATATACCAGgtatttgtactacctcctcaatagttatctcttgttagagccaggttacaaatttgtgtac cctcaattttgcagTCAGTTATTGACAAGGAAAGGAAGGGGGACTACCTCGGAAGAACTGTACAGgttcatacattacttgtgc►tc◄ttacttaacttc ctctggttct►aatttgattcagtgtttgaacaaagtttttaactttatttaagGTTGTTCCTCATGTTACTGACGCAATCCAAGAGTGGATTGAGCGTG TAGCTAATGTTCCTGTGGATGGAAAGGAAGGTCCTCCTGATGTTTGTGTCATCGAATTAGGCGGGACTATAGgtactgtttgttggattatattacattt cctgacaattgttcagaagagtgagttttattattctattttctgtacagGTGATATTGAATCTATGCCCTTTATTGAGGCCCTTGGTCAATTCTCGTAT AAAGTTGgtgagcggtgctctaatttatattaacttttgaagattcagtaattttcttaggctattgcttatcggcttcatcaccgcatctgtcttttgt tcttagGACCTGGTAATTTCTGCTTGGTTCATGTCAGCCTTGTGCCTGTTCTCAGTGTTGTTGGTGAACAGgtaatcgtctatatagttgatatcttcca ttgagattctattttattagtttgtaacgacggagatatgagcctatattgcagAAGACGAAGCCAACCCAGCATAGTGTGCGAGGCCTCAGGAGCCTTG GTTTGACACCAAATATCCTAGCATGTCGCAGCACGAAGgtaatgggcgctccaatattgtcatgtcctttaagtgttgatgttagctatggtttttggtt tttaatcttatcagttcttgttttgtaacagGCACTTGAAGAAAATGTCAAGACAAAACTATCTCAATTTTGCCATGTGCCGgtatatcttgttaaattt ttggttcttatttgcgcttcttagcctaggaaggtcagatttctcatcaaaagacccctgtccgagtaaacatttctgtctgctttcctatggtttccca gGAAGTGAATATAGTAACGCTCTATGATGTTCCAAATATTTGGCACGTTCCTCTGCTTTTAAGGgtaagtacatttcagttgaatagtttcttactaaaa tctaatgagcttgttcctatgctggattttttctcttatcattcttttggtgttaacttctcttcaatagGATCAAAAAGCTCATGAAGCGATCCTAAGA GAGTTAAATCTTAGgtttgtttctgaaccatcttttcttttttctctctcttgagtgtaagttttattttgctcttggctccacactataagattgtctg tgatggctttttctctagtcgtttgacatttgcttattctgcagTAATGCTATAAAGCCTGACTTGACAGAATGGACTGCAAGGACTAAAATTTATGACA CACTGCAAGACCCTgttagtcagctttttctaattatgtttttgatgccattgtgtctatataatcaaaaccattgttcattctcgatggtgtgttctct ttcagGTGAGAATAGCTATGGTTGGAAAGTACACTGGCCTTACTGATTCTTACCTTTCCGTGTTGAAGgtaattgtttttctgtgttcttaaacaaacca aatgttgcattttataatcccaacctttagtttataattgatttccttacaacaaccgtgtctaatattgacgattcttaaaaatgggatttgtgttcac tgcagGCCCTTTTGCATGCTTCTGTTGCATGTCACAAGAAGCTTGTCATAGAGTGGGTTGCAGCTAGTGACCTTGAAGAGATAACTGCACAAGAGgtgag cctggcactctggtttttgtttctctcagggtacgaaaaaatgtatttactctcatgagcttttgtatgacgtacccttgcagACGCCAGATGTCCATAA GGCTGCATGGGATCTTTTGAAGgtacgtgaattttaatggagcctggcacaccaatttggtaaatatgtttgactcaacacttcggttgttgcagGGTGC TGATGGTATCCTAGTACCAGGAGGGTTTGGTGATAGAGGAGTGCAAGGGAAGATACTTGCTACAAAGTACGCCCGTGAAAATCAAGTCCCTTTCCTTGGC ATATGCCTGGGAATGCAGCTGGCTGTTGTTGAATTTGCCCGCTCCATTCTTGGTTTTCACGATGCAAACAGCACAGAGTTTGAACCAGAAACTTCAAGCC CTTGCATCATATTTATGCCAGAAgtactaaacaatctggctctctcatttgattgattacatggttttcatgtattaagtatctacttatacttgttcaa tctctcaatagGGATCCACAACTCATATGGGGGGCACAATGCGCTTAGGGTCAAGGAAGACTTACTTCCAGGTTGCTGATTGCAAGTCTGCCAAGCTgta agcacataatacagtagcacatgataactcgtaggattcatttccaaaatctatataacttctaatctctacattcagGTACGGTAATGCAAAGTTTGTA GATGAGCGACACAGGCACAGATATGAGgtaatatttcagcttcttctattatacatgttattttccttgagatttcttgtgagttgttgacagtgaaata tatatttttggcagGTAAATCCAGATATGATATCAGAAATTGAGAAGGCTGGCCTCTCCTTTGTTGGGAAAGATGAGACTGGGCGTCGTATGGAGgtaat atgcttgtggaaaacatgtttaatgtgtgactctgtctgggattggaacaataattgaatgcttttgtgatgttatgcttcattattctactggtttggt gtgcagATTGTTGAACTACCAAGTCATCCATACTTTGTGGGTGCTCAGTTCCATCCTGAATTCAAGTCCAGACCTGGGAAACCTTCTGCATTGTTTCTAG gtaaagtctaggttatagtttgatagcttttttgagcaagaatctgtggtaatgtggtggcttactaagaaacactttgattcaacagGTCTTATCGCAG CAGCGTCTGGGTGTCTAGAATCAGTATTGCAAACAGGTGGCAAGGTGAACATAGTTTCGAAAAATGGAGTAGCCAATGGATCTGCAATGGGGAAAGTTCA TCAGAACGGCAATGTCTATAGCAATGGAAACGGGCTTCACCACTGActcgagaaaggaacaattttactgcactttttaagcttttttgcttttaatcaa agctttctttaagcaagtcgacatgtatagtccctgagttttgtttccttgtcttgaaaacttgtttggtttcgttgttagggtttggggagagacatgg atatgaatgtgcttcctgttcttgggttactttttacctttcatagctaaaaactaataaagatctatattctagtttcttctggctcgttgaataataa caaaaatttgcagtttgtgttttgtaactaataggtgctttcaacaacttaagtaaagataatatccaagaactttgaatgttacatttttctgtcttta ttgtatcgctcaatttatttttcccatagaacttgtcaagctaaatcttttcgtactttttagtgttcatgtttttgcagccatccgagctgcgtctgtt tta
Border_1 (126850_RB)
CAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTT
ATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCTCGAAATTAACCCTC
ACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATGCTAGCATATGCCATGGAAACTATCAG
TGTTTCTTCCGAGCACAAGTAATGTATGAACCTGTACAGTTCTTCCGAGGTAGACCCCCTTCCTTTCYTTGWCAATAACTGACTGCAAAATTGAGGGTAC
ACAAATTTGTAACCTGGCTCTAACAAGAGATAACTATTGAGGAGGTAGTACAAATACCTGGTATATCTTTCCAGTAGTTATATTGTTGTCACGGGTCAAT
GTACTGTCTAAAAATCGTTCATAGTTTCCAAGGTCCAAATCCACCTGAAAGGGGTCACAATGCATCAAGTTTGAGGAACAATACCTGAGATGATTAGAAA
ATACATCAAAAATCACAATATGACATACCTCTCCACCATCATCCAATACAAATACTTCTCCATGCTCAAACGGAGACATTGTTCCAGCATCAGTGTTAAG
ATAAGGATCTACATACAAGGAATGTAAATGTGAAAAAAGGATCTCATAGCTACGAAATTCACTTAAATTGGCTTCACAATACAAGCCGNTACACAATAAA
ANGTGACTTTTTTTGGCGGGTGACCAATAATACAGAGNGGTGCATGCAATCCAGATAGACAAGAATCTCACCAATTTTAATGGAAGGGACACGAAAACCC
ATGCTTGAAGGAAAAN
| Start of BLAST Alignment: | NT 679 / Intron 5 of 21 |
| First 15 bp Perfect Match: | NT 679 / Intron 5 of 21 |
BLAST Details: Query Sequence: 126850_RB Length: (916 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g12670 68416.t01401 CTP synthase, putative / UTP--ammo... 2941 9.6e-129 1 At4g02120 68417.t00260 CTP synthase, putative / UTP--ammo... 623 3.2e-25 2 At2g34890 68415.t03957 CTP synthase, putative / UTP--ammo... 538 1.4e-18 1 At4g20320 68417.t02789 CTP synthase, putative / UTP--ammo... 305 2.5e-13 2 At1g30820 68414.t03380 CTP synthase, putative / UTP--ammo... 373 1.3e-08 1 At3g52780 68416.t05406 purple acid phosphatase (PAP20) id... 198 0.90 1 At4g10100 68417.t01573 molybdenum cofactor synthesis fami... 186 0.997 1 >At3g12670 68416.t01401 CTP synthase, putative / UTP--ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I Length = 4149 Minus Strand HSPs: Score = 2941 (447.3 bits), Expect = 9.6e-129, P = 9.6e-129 Identities = 595/606 (98%), Positives = 597/606 (98%), Strand = Minus / Plus Query: 915 TTTTCCTTCAAGCATG-GGTTTTCGTGTCCCTTCCATTAAAATTGGTGAGATTCTTGTCT 857 || ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 256 TTCTCCTTCAAGCATGTGGTCTTCGTGTCACTTCCATTAAAATTGGTGAGATTCTTGTCT 315 Query: 856 ATCTGGATTGCATGCACCNCTCTGTATTATTGGTCACCCGCCAAAAAAAGTCACNTTTTA 797 |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 316 ATCTGGATTGCATGCAACACTCTGTATTATTGGTCACCCGCCAAAAAAAGTCACCTTTTA 375 Query: 796 TTGTGTANCGGCTTGTATTGTGAAGCCAATTTAAGTGAATTTCGTAGCTATGAGATCCTT 737 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 TTGTGTAACGGCTTGTATTGTGAAGCCAATTTAAGTGAATTTCGTAGCTATGAGATCCTT 435 Query: 736 TTTTCACATTTACATTCCTTGTATGTAGATCCTTATCTTAACACTGATGCTGGAACAATG 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 TTTTCACATTTACATTCCTTGTATGTAGATCCTTATCTTAACACTGATGCTGGAACAATG 495 Query: 676 TCTCCGTTTGAGCATGGAGAAGTATTTGTATTGGATGATGGTGGAGAGGTATGTCATATT 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 TCTCCGTTTGAGCATGGAGAAGTATTTGTATTGGATGATGGTGGAGAGGTATGTCATATT 555 Query: 616 GTGATTTTTGATGTATTTTCTAATCATCTCAGGTATTGTTCCTCAAACTTGATGCATTGT 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 GTGATTTTTGATGTATTTTCTAATCATCTCAGGTATTGTTCCTCAAACTTGATGCATTGT 615 Query: 556 GACCCCTTTCAGGTGGATTTGGACCTTGGAAACTATGAACGATTTTTAGACAGTACATTG 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 GACCCCTTTCAGGTGGATTTGGACCTTGGAAACTATGAACGATTTTTAGACAGTACATTG 675 Query: 496 ACCCGTGACAACAATATAACTACTGGAAAGATATACCAGGTATTTGTACTACCTCCTCAA 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 ACCCGTGACAACAATATAACTACTGGAAAGATATACCAGGTATTTGTACTACCTCCTCAA 735 Query: 436 TAGTTATCTCTTGTTAGAGCCAGGTTACAAATTTGTGTACCCTCAATTTTGCAGTCAGTT 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 TAGTTATCTCTTGTTAGAGCCAGGTTACAAATTTGTGTACCCTCAATTTTGCAGTCAGTT 795 Query: 376 ATTGWCAARGAAAGGAAGGGGGTCTACCTCGGAAGAACTGTACAGGTTCATACATTACTT 317 ||||+|||+||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 796 ATTGACAAGGAAAGGAAGGGGGACTACCTCGGAAGAACTGTACAGGTTCATACATTACTT 855 Query: 316 GTGCTC 311 |||||| Sbjct: 856 GTGCTC 861 >At4g02120 68417.t00260 CTP synthase, putative / UTP--ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I Length = 3444 Minus Strand HSPs: Score = 623 (99.5 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25 Identities = 207/292 (70%), Positives = 207/292 (70%), Strand = Minus / Plus
Border_2 (126850_LB)
TTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAA
ATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGATTCAGTGTTTGAACAAAGTTT
TTAACTTTATTTAAGGTTGTTCCTCATGTTACTGACGCAATCCAAGAGTGGATTGAGCGTGTAGCTAATGTTCCTGTGGATGGAAAGGAAGGTCCTCCTG
ATGTTTGTGTCATCGAATTAGGCGGGACTATAGGTACTTGTTTGTTGGATTATATTACATTTCCTGACAATTGTTCAGAAGAGTGAGTTTTATTATTCTA
TTTTCTGTACAGGTGATATTGAATCTATGCCCTTTATTGAGGCCCTTGGTCAATTCTCGTATAAAGTTGGTGAGCGGTGCTCTAATTTATATTAACTTTT
GAAGATTCAGTAATTTTCTTAGGCTATTGCTTATCGGCTTCATCACCGCATCTGTCTTTTGTTCTTAGGACCTGGTAATTTCTGCTTGGTTCATGTCAGC
CTTGTGCCTGTTCTCAGTGTTGTTGGTGAACAGGTAATCGTCTATATAGTTGATATCTTCCATTGAGATTCTATTTTATTAGTTTGTAACGACGGAGATA
TGAGCCTATATTGCAGAAGACGAAGCCAACCCAGCATAGTGTGCGAGGCCTCAGGAGCCTTGGTTTGACACCAAATATCCTAGCATGTCGCAGCACGAAG
GTAATGGGCGCTCCAATATTGGCATGTCCTTTAAG
| Start of BLAST Alignment: | NT 677 / Intron 5 of 21 |
| First 15 bp Perfect Match: | NT 701 / Intron 5 of 21 |
BLAST Details: Query Sequence: 126850_LB Length: (835 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g12670 68416.t01401 CTP synthase, putative / UTP--ammo... 3308 2.5e-145 1 At2g34890 68415.t03957 CTP synthase, putative / UTP--ammo... 553 1.6e-38 2 At4g20320 68417.t02789 CTP synthase, putative / UTP--ammo... 841 2.8e-32 1 At4g02120 68417.t00260 CTP synthase, putative / UTP--ammo... 634 4.8e-30 2 >At3g12670 68416.t01401 CTP synthase, putative / UTP--ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I Length = 4149 Plus Strand HSPs: Score = 3308 (502.4 bits), Expect = 2.5e-145, P = 2.5e-145 Identities = 676/688 (98%), Positives = 676/688 (98%), Strand = Plus / Plus Query: 150 TGTTA-TTAAGTTGTCTAAGCGTC-AATTTGATTCAGTGTTTGAACAAAGTTTTTAACTT 207 | ||| |||| || || | || ||||||||||||||||||||||||||||||||||| Sbjct: 860 TCTTACTTAACTTC-CTCTGGTTCTAATTTGATTCAGTGTTTGAACAAAGTTTTTAACTT 918 Query: 208 TATTTAAGGTTGTTCCTCATGTTACTGACGCAATCCAAGAGTGGATTGAGCGTGTAGCTA 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 919 TATTTAAGGTTGTTCCTCATGTTACTGACGCAATCCAAGAGTGGATTGAGCGTGTAGCTA 978 Query: 268 ATGTTCCTGTGGATGGAAAGGAAGGTCCTCCTGATGTTTGTGTCATCGAATTAGGCGGGA 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 ATGTTCCTGTGGATGGAAAGGAAGGTCCTCCTGATGTTTGTGTCATCGAATTAGGCGGGA 1038 Query: 328 CTATAGGTACTTGTTTGTTGGATTATATTACATTTCCTGACAATTGTTCAGAAGAGTGAG 387 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 CTATAGGTACT-GTTTGTTGGATTATATTACATTTCCTGACAATTGTTCAGAAGAGTGAG 1097 Query: 388 TTTTATTATTCTATTTTCTGTACAGGTGATATTGAATCTATGCCCTTTATTGAGGCCCTT 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 TTTTATTATTCTATTTTCTGTACAGGTGATATTGAATCTATGCCCTTTATTGAGGCCCTT 1157 Query: 448 GGTCAATTCTCGTATAAAGTTGGTGAGCGGTGCTCTAATTTATATTAACTTTTGAAGATT 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 GGTCAATTCTCGTATAAAGTTGGTGAGCGGTGCTCTAATTTATATTAACTTTTGAAGATT 1217 Query: 508 CAGTAATTTTCTTAGGCTATTGCTTATCGGCTTCATCACCGCATCTGTCTTTTGTTCTTA 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 CAGTAATTTTCTTAGGCTATTGCTTATCGGCTTCATCACCGCATCTGTCTTTTGTTCTTA 1277 Query: 568 GGACCTGGTAATTTCTGCTTGGTTCATGTCAGCCTTGTGCCTGTTCTCAGTGTTGTTGGT 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278 GGACCTGGTAATTTCTGCTTGGTTCATGTCAGCCTTGTGCCTGTTCTCAGTGTTGTTGGT 1337 Query: 628 GAACAGGTAATCGTCTATATAGTTGATATCTTCCATTGAGATTCTATTTTATTAGTTTGT 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 GAACAGGTAATCGTCTATATAGTTGATATCTTCCATTGAGATTCTATTTTATTAGTTTGT 1397 Query: 688 AACGACGGAGATATGAGCCTATATTGCAGAAGACGAAGCCAACCCAGCATAGTGTGCGAG 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1398 AACGACGGAGATATGAGCCTATATTGCAGAAGACGAAGCCAACCCAGCATAGTGTGCGAG 1457 Query: 748 GCCTCAGGAGCCTTGGTTTGACACCAAATATCCTAGCATGTCGCAGCACGAAGGTAATGG 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 GCCTCAGGAGCCTTGGTTTGACACCAAATATCCTAGCATGTCGCAGCACGAAGGTAATGG 1517 Query: 808 GCGCTCCAATATTGGCATGTCCTTTAAG 835 |||||||||||||| ||||||||||||| Sbjct: 1518 GCGCTCCAATATTGTCATGTCCTTTAAG 1545 >At2g34890 68415.t03957 CTP synthase, putative / UTP--ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I Length = 3077 Plus Strand HSPs: Score = 553 (89.0 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38 Identities = 191/278 (68%), Positives = 191/278 (68%), Strand = Plus / Plus