At5g56680 SYNGENTA 127779
Genomic Sequence (from TAIR)
gacatctgtaaaactggacctataagcaacacaagtttgacaatataggaatacaaaataattcgaattcagagaaaaattatctctactttaataggtc tataacgtttgcataatctaaaacccaagatattttggaaacatatttctattttaataccattttccactaatacttttcaataacagtagttgtttcc ataaataacgtctccactaattgaataaaatgaaatatttaacgaattattaattgcgataattagatacgaatcaaaaagattccaccggcttcgttgg aaactttaagatatttccgattttaccccatataaagggaagatccaacggttattcttacatctctcaatacgcagccaaatacactctctctgaaacc tctcctcttttagggtttaatatcaacgcctccaaaatttccgtgcttttgttttcgtagataacgaacaATGGCTGATGAGATTGTGCCGCCGGCGACT CAATTAGCCGCCGTATCCTTAGAAAACGATGGATCTACGGTGCAAAGAGCTCAATTCTCTAACCGGGTTTTGATTCGAACGATTTTGGATCGACCTGACG GCGGAGCTGGACTCGCCGGTCAAACGGTTCGAATCGGTGGTTGGGTAAAATCCGGAAGAGATCAAGGGAAAAGAACGTTTTCTTTCCTTGCGGTTAACGA TGGATCTTGTCCAGCGAATCTTCAGGTTATGGTGGATCCGTCTCTCTATGATGTCTCTAACTTGGTTGCTACGGGAACTTGTGTGACTGTTGATGGAGTT TTGAAGGTTCCACCGAAAGGTAAAGGTACGCAGCAGCAGATTGAGCTTAACGTTGTGAAGGTGATTGATGTTGGAACGGTGGATGCGTCTAAGTATCCAC TTCCTAAGACTAAGTTGACTCTTGAGACTTTGAGAGATGTGCTTCATCTTCGTTCTAGAACTAACTCGgtattacttcttatctctttcactgagttgtg ttttgattgttcctaggtttgaatcaaagaatagttgatttatggtgatatttgcctgtgatttcagATCTCAGCTGTTGCAAGAATTCGTAATGCTCTT GCTTTTGCGACTCACAGTTTCTTTCAAGAGCATAGTTTCCTTTACATTCACACTCCTATCATCACGACAAGTGATTGTGAAGGTGCTGGTGAAATGTTCC AAGCAACAACTTTGATCAATTACACTGAGAGGTTGGAGCAGGATCTCATTGATAACCCTCCGCCTACTGAGGCTGATGTTGAAGCTGCGAGGCTCATTGT CATTGAGAGAGGTAATGTTGTAGCGGAACTGAAAGCTGCCAAAGCAAGCAAGGAAGCGATCACTGCTGCTGTTGCTGAACTTAAAATAGCAAAGGAGACT TTTGCTCATATTGATGAGAGGTCGAGGCTTAGACCTGGACTACCTAAGAAAGATGGAAACATTGATTATTCCAAGGATTTCTTTGGTCGTCAAGCTTTCT TGACAGTTTCCGGTCAATTACAAGTGGAGACCTATGCTTGTGCTCTTAGCAATGTGTATACATTTGGCCCGACTTTCCGGGCAGAGAACTCTCACACTTC AAGGCATCTTGCTGAATTCTGGATGGTTGAGCCTGAGATTGCTTTTGCAGATCTAGAGgtaataaacatacgatattctttggttttcttctttatcgtt aatgtagactcagtatcttaaaaaccttcttttaaatttgtgcagGACGACATGAACTGTGCAGAGGCGTATGTGAAATACATGTGCAACTGGTTGCTTG AGAAATGTTACGCTGACATGGAACTTATGGCTAAGAATTTCGACTCAGGATGCATTGACAGGCTAAAATTGGTTGCCTCTACTCCGTTTGGGCGTATAAC ATACACTAAAGCAATAGAGCTACTTGAGGAAGCTGTGGCTAAAGGAAAGGAATTTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGAGCATGAA AGgtttgtgataacccttaagaaccattcctcagctttaaacagttttaagaaatggttgctaatgaaacatgtcttgcaattacagATACTTGACAGAG GTTCTGTTTCAAAAGCCACTTATTGTCTATAACTACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCTGCCATGG ATGTCCTCGTTCCAAAGgtaatattaaaactcaaagttgaatgcatttcctttatttgtgtgtgattaatcatcgaagaaacacaacaacggcctctttc cttacccttatctctgtataaattagGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGTCATCAAAAAGAGgtgtgtgaaagtgaa accaatattcaatttttggcttaatttttttttgttttggttcttttgtgaaccttatgaagcaaaatcttgtgtttgaacagGATTGAGGAGATGGGTC TTCCAATAGAGCCATATGAGTGGTACCTAGACTTGCGCCGTTATGGAACAGTGAAGCATTGTGGGTTTGGACTTGGCTTCGAACGTATGATTCTCTTCGC TACTGGACTTG►A◄TAACAT◄CAGAGACGTTATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTTTGAttcctcttctttacaccatttacatacaca atttcgcttttattagctggtctggtttccataaccgacttggtttagtttactttttaagttggttaaaggaaaattgtattgacttttgattttttat ctctatggatctggttttgttcggttatcccgatttggctattgaatgataggagaaccaatttgagatataccacaaacatataggagaaccaatttga gatataccacaaacatataggagaaccaatttgaggtataccactaaccgttgttagttgttactgttcacatttttatccggatttggataaatctctt tggcttgttggaagttctttttgaaaaatgcatattattacataccttcgaagttcgaaactgacttcaaaactgcagctagaactttagtatcccttga aac
Border_1 (127779_AbB)
TTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTA
ATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATTCAAGTCCAGTAGCGAAGAGAATCAT
ACGTTCGAAGCCAAGTCCAAACCCACAATGCTTCACTGTTCCATAACGGCGCAAGTCTAGGTACCACTCATATGGCTCTATTGGAAGACCCATCTCCTCA
ATCCTGTTCAAACACAAGATTTTGCTTCATAAGGTTCACAAAAGAACCAAAACAAAAAAAAATTAAGCCAAAAATTGAATATTGGTTTCACTTTCACACA
CCTCTTTTTGATGACATCATATCGTTCTTCCCTTTGGCTTCCACCAATGAGTTCTCCAACCTAATTTATACAGAGATAAGGGTAAGGAAAGAGGCCGTTG
TTGTGTTTCTTCGATGATTAATCACACACAAATAAAGGAAATGCATTCAACTTTGAGTTTTAATATTACCTTTGGAACGAGGACATCCATGGCAGCAACT
GTCTTCTCATCATCGTTAAGTCTCATGTAAAAAGCTTTGATTCCTTTCGGGTAGTTATAGACAATAAGTGGCTTTTGAAACAGAACCTCTGTCAAGTATC
TGTAATTGCAAGACATGTTTCATTAGCAACCATTTCTTAAAACTGTTTAAAGCTGAGGAATGGTTCTTAAGGGTTATCACAAACCTTTCATGCTCCGAGG
CTAAGTCGATTCCCCACTCCACATTGTTATCAAATTCCTTTCCTTTAGCCACAGCTTCCTCAAGTAGCTCTATTGCTTTAGKGKGATGKTATACGCCCAA
ACGGAGTAGAGGCAACCAATTTTAGCCTGTCAATGCATCCTGAGTCGAAATTC
| Start of BLAST Alignment: | NT 2148 / Exon 6 of 6 |
| First 15 bp Perfect Match: | NT 2142 / Exon 6 of 6 |
BLAST Details: Query Sequence: 127779_AbB Length: (953 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g56680 68418.t06567 asparaginyl-tRNA synthetase 1, cyt... 3619 3.8e-159 1 At1g70980 68414.t07492 asparaginyl-tRNA synthetase, cytop... 1176 3.2e-73 2 At3g07420 68416.t00799 asparaginyl-tRNA synthetase 2, cyt... 328 1.7e-06 1 At3g10750 68416.t01156 hypothetical protein 190 0.991 1 At4g02670 68417.t00331 zinc finger (C2H2 type) family pro... 188 0.999 1 >At5g56680 68418.t06567 asparaginyl-tRNA synthetase 1, cytoplasmic / asparagine-tRNA ligase 1 (SYNC1) identical to SP|Q9SW96 Length = 2454 Minus Strand HSPs: Score = 3619 (549.0 bits), Expect = 3.8e-159, P = 3.8e-159 Identities = 742/785 (94%), Positives = 745/785 (94%), Strand = Minus / Plus Query: 953 GAATTTCGACTCAGGATGCATTGACAGGCTAAAATTGGTTGCCTCTACTCCGTTTGGGCG 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1467 GAATTTCGACTCAGGATGCATTGACAGGCTAAAATTGGTTGCCTCTACTCCGTTTGGGCG 1526 Query: 893 TATAMCATCMCMCTAAAGCAATAGAGCTACTTGAGGAAGCTGTGGCTAAAGGAAAGGAAT 834 ||||+||| +|+|||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1527 TATAACAT-ACACTAAAGCAATAGAGCTACTTGAGGAAGCTGTGGCTAAAGGAAAGGAAT 1585 Query: 833 TTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGAGCATGAAAGGTTTGTGATAA 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1586 TTGATAACAATGTGGAGTGGGGAATCGACTTAGCCTCGGAGCATGAAAGGTTTGTGATAA 1645 Query: 773 CCCTTAAGAACCATTCCTCAGCTTTAAACAGTTTTAAGAAATGGTTGCTAATGAAACATG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1646 CCCTTAAGAACCATTCCTCAGCTTTAAACAGTTTTAAGAAATGGTTGCTAATGAAACATG 1705 Query: 713 TCTTGCAATTACAGATACTTGACAGAGGTTCTGTTTCAAAAGCCACTTATTGTCTATAAC 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1706 TCTTGCAATTACAGATACTTGACAGAGGTTCTGTTTCAAAAGCCACTTATTGTCTATAAC 1765 Query: 653 TACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCT 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1766 TACCCGAAAGGAATCAAAGCTTTTTACATGAGACTTAACGATGATGAGAAGACAGTTGCT 1825 Query: 593 GCCATGGATGTCCTCGTTCCAAAGGTAATATTAAAACTCAAAGTTGAATGCATTTCCTTT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1826 GCCATGGATGTCCTCGTTCCAAAGGTAATATTAAAACTCAAAGTTGAATGCATTTCCTTT 1885 Query: 533 ATTTGTGTGTGATTAATCATCGAAGAAACACAACAACGGCCTCTTTCCTTACCCTTATCT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1886 ATTTGTGTGTGATTAATCATCGAAGAAACACAACAACGGCCTCTTTCCTTACCCTTATCT 1945 Query: 473 CTGTATAAATTAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGT 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1946 CTGTATAAATTAGGTTGGAGAACTCATTGGTGGAAGCCAAAGGGAAGAACGATATGATGT 2005 Query: 413 CATCAAAAAGAGGTGTGTGAAAGTGAAACCAATATTCANNNNNNNNNNNNNNNNNNNNNN 354 |||||||||||||||||||||||||||||||||||||| Sbjct: 2006 CATCAAAAAGAGGTGTGTGAAAGTGAAACCAATATTCAATTTTTGGCTTAATTTTTTTTT 2065 Query: 353 NNNNNNNNNNNNNNGTGAACCTTATGAAGCAAAATCTTGTGTTTGAACAGGATTGAGGAG 294 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2066 GTTTTGGTTCTTTTGTGAACCTTATGAAGCAAAATCTTGTGTTTGAACAGGATTGAGGAG 2125 Query: 293 ATGGGTCTTCCAATAGAGCCATATGAGTGGTACCTAGACTTGCGCCGTTATGGAACAGTG 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 ATGGGTCTTCCAATAGAGCCATATGAGTGGTACCTAGACTTGCGCCGTTATGGAACAGTG 2185 Query: 233 AAGCATTGTGGGTTTGGACTTGGCTTCGAACGTATGATTCTCTTCGCTACTGGACTTGAA 174 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 AAGCATTGTGGGTTTGGACTTGGCTTCGAACGTATGATTCTCTTCGCTACTGGACTTGAT 2245 Query: 173 TATAT 169 | || Sbjct: 2246 AACAT 2250 >At1g70980 68414.t07492 asparaginyl-tRNA synthetase, cytoplasmic, putative / asparagine-tRNA ligase, putative similar to SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis thaliana] Length = 2285 Minus Strand HSPs: Score = 1176 (182.5 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73 Identities = 329/414 (79%), Positives = 332/414 (80%), Strand = Minus / Plus
Border_2 (127779_RB)
CTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCKCGM
AATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATGCTAGCATATGCCATG
GAAACCACCATAACATCAGAGACGTTATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTTTGATTCCTCTTCTTTACACCATTTACATACACAATTTC
GCTTTTATTAGCTGGTCTGGTTTCCATAACCGACTTGGTTTAGTTTACTTTTTAAGTTGGTTAAAGGAAAATTGTATTGACTTTTGATTTTTTATCTCTA
TGGATCTGGTTTTGTTCGGTTATCCCGATTTGGCTATTGAATGATAGGAGAACCAATTTGAGATATACCACAAACATATAGGAGAACCAATTTGAGATAT
ACCACAAACATATAGGAGAACCAATTTGAGGTATACCACTAACCGTTGTTAGTTGTTACTGTTCACATTTTTATCCGGATTTGGATAAATCTCTTTGGCT
TGTTGGAAGTTCTTTTTGAAAAATGCATATTATTACATACCTTCGAAGTTCGAAACTGACTTCAAAACTGCAGCTAGAACTTTAGTATCCCTTGAAACCA
AAATGCAATGAAAAAAAAAACTGAANAACGCTAANAATGNGTAATCGAAACATAGAGATTAACAACAATGTNCCTTGAGCCCAAATAGCANAGCCATGAA
GACGATGAANAATGTTACGAGACCAAGCAAGNGATCTCAGCTGATTCGTGGAATT
| Start of BLAST Alignment: | NT 2141 / Exon 6 of 6 |
| First 15 bp Perfect Match: | NT 2141 / Exon 6 of 6 |
BLAST Details: Query Sequence: 127779_RB Length: (855 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g56680 68418.t06567 asparaginyl-tRNA synthetase 1, cyt... 1055 2.3e-42 1 At3g46210 68416.t04647 3' exoribonuclease family domain 1... 408 8.4e-12 2 At1g70980 68414.t07492 asparaginyl-tRNA synthetase, cytop... 315 1.4e-10 2 At5g02960 68418.t00219 40S ribosomal protein S23 (RPS23B)... 204 0.59 1 >At5g56680 68418.t06567 asparaginyl-tRNA synthetase 1, cytoplasmic / asparagine-tRNA ligase 1 (SYNC1) identical to SP|Q9SW96 Length = 2454 Plus Strand HSPs: Score = 1055 (164.3 bits), Expect = 2.3e-42, P = 2.3e-42 Identities = 211/211 (100%), Positives = 211/211 (100%), Strand = Plus / Plus Query: 210 ATAACATCAGAGACGTTATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTTTGATTCC 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2244 ATAACATCAGAGACGTTATTCCTTTCCCTCGCTATCCTGGAAAAGCTGATCTTTGATTCC 2303 Query: 270 TCTTCTTTACACCATTTACATACACAATTTCGCTTTTATTAGCTGGTCTGGTTTCCATAA 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2304 TCTTCTTTACACCATTTACATACACAATTTCGCTTTTATTAGCTGGTCTGGTTTCCATAA 2363 Query: 330 CCGACTTGGTTTAGTTTACTTTTTAAGTTGGTTAAAGGAAAATTGTATTGACTTTTGATT 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2364 CCGACTTGGTTTAGTTTACTTTTTAAGTTGGTTAAAGGAAAATTGTATTGACTTTTGATT 2423 Query: 390 TTTTATCTCTATGGATCTGGTTTTGTTCGGT 420 ||||||||||||||||||||||||||||||| Sbjct: 2424 TTTTATCTCTATGGATCTGGTTTTGTTCGGT 2454 >At3g46210 68416.t04647 3' exoribonuclease family domain 1-containing protein similar to SP|Q9NQT4 Exosome complex exonuclease RRP46 (EC 3.1.13.-) (Ribosomal RNA processing protein 46) {Homo sapiens}; contains Pfam profile PF01138: 3' exoribonuclease family, domain 1 Length = 2140 Minus Strand HSPs: Score = 408 (67.3 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12 Identities = 140/199 (70%), Positives = 140/199 (70%), Strand = Minus / Plus