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At5g39680 SYNGENTA 129789

Genomic Sequence (from TAIR)

atcaaaatatcattattgttgttatatgtattcatgaagtgaaaaaatattaaaattttataaataatcagctttatacataatatatataaattgatat
ttcgactcacaaataaatctaaacataaaaattgtaattacatattatagatctaattttattaacaatacaaaaataaataaataataaatataaatta
gcataaagaacaattaatgtaattttttttaataattttcacaacagttttatttaaaagttctaagccgtaatgtacatgtttaaatgggtcaaagtca
aagagactagtgattgttgacttcgaaactttccgttaaaacttaaaagcaccttcctcataatctctggttactttgggaagaaaaatatcaattttgg
cgccATGTCAGCCTTGTCTGTGATCGAACAACGATTGTTAAAGTGGGACAAGCTCGCGTCTTTAGTACCCAAATCAAAAAAAACTCCTTTTCCGATTGAT
CGTCTAAACGAGCTTTTGAAAGTCTGTGCTAATTCAAGTTATCTAAGAATTGGAGAATCGATTCACGCTCATTTGATTGTTACCAACCAATCATCTAGAG
CTGAAGACGCGTATCAGATCAATTCTCTGATCAATCTCTATGTGAAATGCAGAGAAACTGTTCGTGCACGCAAGCTGTTCGATTTAATGCCTGAGAGAAA
TGTTGTTTCTTGGTGTGCGATGATGAAGGGATATCAAAATTCTGGGTTTGATTTTGAAGTTTTGAAGCTTTTTAAAAGTATGTTTTTTTCTGGTGAATCG
AGACCTAATGAGTTTGTAGCTACTGTGGTTTTTAAGTCTTGTTCAAACTCTGGGAGGATTGAAGAAGGTAAACAGTTTCATGGATGTTTTCTTAAGTATG
GTTTGATTTCTCATGAGTTTGTACGGAACACTCTTGTTTACATGTATTCTTTGTGTTCGGGGAATGGCGAGGCTATACGAGTTTTGGATGATCTTCCTTA
TTGTGATCTTTCTGTGTTTAGTTCTGCTCTTAGTGGTTATCTAGAGTGTGGTGCTTTTAAAGAAGGGCTTGATGTTTTGAGAAAGACAGCTA►ACGAAGA
TTTTGTTTGGAACAACC►TCACGTATTTGTCTTCTTTACGGCTTTTCTCCAATCTCAGAGATTTGAATTTGGCTCTGCAGGTTCATAGCCGAATGGTGAG
GTTTGGTTTCAACGCTGAAGTTGAGGCTTGTGGTGCACTCATTAATATGTATGGCAAATGTGGTAAAGTCCTTTATGCTCAGAGAGTTTTCGATGATACA
CACGCTCAAAACATTTTCTTGAATACAACGATCATGGATGCTTACTTCCAGGATAAGTCTTTCGAGGAGGCTCTGAATCTGTTTTCAAAGATGGATACTA
AAGAGGTTCCACCAAATGAGTACACCTTTGCTATTTTGCTGAATTCAATTGCAGAGCTATCGCTTCTAAAACAGGGCGATCTTCTACATGGACTTGTTTT
GAAATCCGGCTATAGGAACCATGTAATGGTAGGCAATGCATTGGTTAACATGTACGCCAAAAGTGGCAGCATTGAGGATGCAAGGAAAGCATTCTCAGGC
ATGACTTTTAGAGATATAGTTACTTGGAACACAATGATATCTGGATGCTCACATCATGGATTGGGGAGGGAAGCGCTTGAAGCCTTTGATAGAATGATTT
TTACAGGAGAGATTCCCAACCGCATAACTTTTATCGGCGTTTTGCAGGCTTGTAGCCATATTGGTTTTGTGGAGCAAGGGCTTCATTACTTTAATCAGCT
GATGAAGAAATTTGATGTCCAGCCTGATATACAGCATTATACATGCATTGTTGGACTTTTGAGCAAGGCTGGAATGTTCAAGGATGCTGAGGATTTCATG
AGAACAGCTCCAATTGAATGGGATGTTGTTGCATGGAGAACTTTGCTAAATGCTTGTTATGTTCGCCGGAATTACAGGTTAGGAAAAAAAGTAGCAGAAT
ATGCCATTGAGAAGTATCCAAACGACTCAGGAGTTTACGTATTGTTATCCAATATCCACGCCAAGTCAAGGGAGTGGGAAGGTGTGGCAAAAGTGCGTTC
TTTGATGAATAACAGAGGTGTTAAGAAGGAGCCTGGAGTAAGCTGGATAGGGATACGTAATCAAACCCATGTGTTTCTTGCAGAGGATAATCAACACCCC
GAGATTACGCTGATTTATGCAAAGGTTAAGGAAGTTATGTCGAAGATTAAACCATTAGGGTATTCGCCTGATGTTGCTGGAGCTTTCCATGATGTCGATG
AAGAACAGAGAGAAGATAACCTCTCTTATCATAGTGAGAAGCTAGCTGTGGCATATGGTCTGATAAAAACGCCAGAGAAATCACCATTGTACGTGACTAA
AAACGTGAGGATATGTGATGATTGTCACTCTGCAATTAAGCTTATCTCGAAGATCTCAAAACGATACATAGTTATCAGAGATTCCAATCGGTTCCATCAT
TTCCTAGATGGTCAGTGTTCTTGCTGTGATTACTGGTGAagctataaaccaaaggttgaattatagagtgatggagagctcttgcacctctattgcggcc
tcacgagcttcagttattgtaagtagtactaaaataagttgcatcattttttgagatccctttagtcatcaatctctaggtgtaaatagtgtataataac
accttttggcagattattcatgtctgtgacaattatttccaaactcattggtttttacgctctatagcagagcttttgatatgaaagtttggtagtttat
acaaggtgcggagacaacagtattaacagacacaatctcaaagcaagaagaaaagaagtgcagaaattgatactttaaggaaatacgatttcagcagaag
ttgttctccatgaatttcacaaatccatagaaatcgattcttccgtctttacttccatcgaatgatctgatcattctcctgcagttctcaaggttagatc
cttgctttaagccaaggattgtcaaaactctctgcaaatctataggatcgataaacccatctctgttttcatcaaagacatcaaaagcttgcttcacttc
ctctaagcttggctctttctcttcgaacagattcgaaacctccttggaactgtactgtttttgaagtccctcgttttcttggtcagtggaaagccctaag
cttttcataaccatccctacatcttctctgcaaagaccatcatcatcatcatcacgatattcttcgtgtttgatcgaagtttggaactcaagatctttgc
tcttcttctcggaaacacattgctggtgttgaacaagaggccagaacctagagaaaaataactgagcaaaagaaacccatctgaaaaaaccgatgaggaa
gaagttgatcagaccaaacaaagggaaagacaaagaagaagactgtttgcatttagacaatgaactcttcatggttataaagctatataattggttttca
gtcataacttttgttagaagtctatttgaaaagtaaaactaggcaaaataatgaatcacaaggaaaagaatgttttggaggagatgttggagatatgagt
ttgtttttatggttgtgtatatatagatgatgaataagtcaatgtggacacaattttggtggcgaggcaaaagagaggaagttgcagttggaagaagaga
cc

Border_1 (129789_LB)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATTT
ATCTTGCATATGTCACGTATTTGTCTTCTTTACGGCTTTTCTCCAATCTCAGAGATTTGAATTTGGCTCTGCAGGTTCATAGCCGAATGGTGAGGTTTGG
TTTCAACGCTGAAGTTGAGGCTTGTGGTGCACTCATTAATATGTATGGCAAATGTGGTAAAGTCCTTTATGCTCAGAGAGTTTTCGATGATACACACGCT
CAAAACATTTTCTTGAATACAACGATCATGGATGCTTACTTCCAGGATAAGTCTTTCGAGGAGGCTCTGAATCTGTTTTCAAAGATGGATACTAAAGAGG
TTCCACCAAATGAGTACACCTTTGCTATTTTGCTGAATTCAATTGCAGAGCTATCGCTTCTAAAACAGGGCGATCTTCTACATGGACTTGTTTTGAAATC
CGGCTATAGGAACCATGTAATGGTAGGCAATGCATTGGTTAACATGTACGCCAAAAGTGGCAGCATTGAGGATGAGGAAAANCNCTT

Start of BLAST Alignment:	NT 688 / Exon 1 of 1
First 15 bp Perfect Match:	NT 712 / Exon 1 of 1

BLAST Details:
Query Sequence: 129789_LB 
Length: (687 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g39680 68418.t04471 pentatricopeptide (PPR) repeat-con...  2325  8.2e-101  1
At2g03380 68415.t00263 pentatricopeptide (PPR) repeat-con...   348  4.5e-08   1
At3g49170 68416.t04991 pentatricopeptide (PPR) repeat-con...   328  5.7e-07   1
At4g39530 68417.t05125 pentatricopeptide (PPR) repeat-con...   321  1.3e-06   1


>At5g39680 68418.t04471 pentatricopeptide (PPR) repeat-containing protein
           contains INTERPRO:IPR002885 PPR repeats
        Length = 3210

  Plus Strand HSPs:

 Score = 2325 (354.9 bits), Expect = 8.2e-101, P = 8.2e-101
 Identities = 481/495 (97%), Positives = 481/495 (97%), Strand = Plus / Plus

Query:   189 ACCACAATATTTATCTTGCATATG-TCACGTATTTGTCTTCTTTACGGCTTTTCTCCAAT 247
             || |  || ||| | | | | |   |||||||||||||||||||||||||||||||||||
Sbjct:   709 ACGAAGAT-TTTGTTTGGAACAACCTCACGTATTTGTCTTCTTTACGGCTTTTCTCCAAT 767

Query:   248 CTCAGAGATTTGAATTTGGCTCTGCAGGTTCATAGCCGAATGGTGAGGTTTGGTTTCAAC 307
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   768 CTCAGAGATTTGAATTTGGCTCTGCAGGTTCATAGCCGAATGGTGAGGTTTGGTTTCAAC 827

Query:   308 GCTGAAGTTGAGGCTTGTGGTGCACTCATTAATATGTATGGCAAATGTGGTAAAGTCCTT 367
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   828 GCTGAAGTTGAGGCTTGTGGTGCACTCATTAATATGTATGGCAAATGTGGTAAAGTCCTT 887

Query:   368 TATGCTCAGAGAGTTTTCGATGATACACACGCTCAAAACATTTTCTTGAATACAACGATC 427
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   888 TATGCTCAGAGAGTTTTCGATGATACACACGCTCAAAACATTTTCTTGAATACAACGATC 947

Query:   428 ATGGATGCTTACTTCCAGGATAAGTCTTTCGAGGAGGCTCTGAATCTGTTTTCAAAGATG 487
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   948 ATGGATGCTTACTTCCAGGATAAGTCTTTCGAGGAGGCTCTGAATCTGTTTTCAAAGATG 1007

Query:   488 GATACTAAAGAGGTTCCACCAAATGAGTACACCTTTGCTATTTTGCTGAATTCAATTGCA 547
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1008 GATACTAAAGAGGTTCCACCAAATGAGTACACCTTTGCTATTTTGCTGAATTCAATTGCA 1067

Query:   548 GAGCTATCGCTTCTAAAACAGGGCGATCTTCTACATGGACTTGTTTTGAAATCCGGCTAT 607
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1068 GAGCTATCGCTTCTAAAACAGGGCGATCTTCTACATGGACTTGTTTTGAAATCCGGCTAT 1127

Query:   608 AGGAACCATGTAATGGTAGGCAATGCATTGGTTAACATGTACGCCAAAAGTGGCAGCATT 667
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1128 AGGAACCATGTAATGGTAGGCAATGCATTGGTTAACATGTACGCCAAAAGTGGCAGCATT 1187

Query:   668 GAGGATG-A-GGAAA 680
             ||||||| | |||||
Sbjct:  1188 GAGGATGCAAGGAAA 1202


>At2g03380 68415.t00263 pentatricopeptide (PPR) repeat-containing protein
           contains INTERPRO:IPR002885 PPR repeats
        Length = 2070

  Plus Strand HSPs:

 Score = 348 (58.3 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 264/459 (57%), Positives = 264/459 (57%), Strand = Plus / Plus