At4g29060 SYNGENTA 129824
Genomic Sequence (from TAIR)
CAAACTCTCCTTCTTCACTCTGAGAAAGTGCTTTGTTGGAGAAGAATTGCAGCACCAGAAGAAGCACTAGTACAAAAAATTTCATcgttttgcaattctt ttttcctctcatgaatgatcttaccataagtttttctttttttggtcaaaaccatatgattataatatgaaaaagatctaaataggctttatctgtatga cttggagggtcaaaaactaaagtcttttagactcttagtaataaaatgttgaataagtcttgttcgacgcctcttattgatttattaagaaattgaccag catgaaaaggaggcattgctactatgtaatgtctgggggggagtttcacatcgatataggctattgatgggccttagtatgaagcccgtaagcccatatt gaagctcgagtcttgatggcgcaggagagagagaaaaagacaatcacctgtagtaatctttgaagactcttatctcctctatccaccaagagagggaaaa cgaaataaaaatagcacaggggagagacaaaatgagataaggatttgaagcctctcaccactctcctcgttttcgcttcgtgcttatttgtcaaacgcga acatttcaccgaaacttagcgacttttctcgctttactctttctgggagcaatttctcagagcataggcgagcttaaaggtagctccttttcttagcttt gctcaaatgggtttcttagttactcttcttatgtttccgtgataagatggttcgaaatttactagctttcttaatggaaatttttgagtttttctagtta gactacaatgaaatttcaattcgaaattgagaaaaagagtggtccttttcttcatatgctttcagattagtctgtgttgttgtctgaggaaagcttgtaa ttttgacagtgtgtaatggttttctatgtgtaggtgacagttcttagctATGGCTACGATTACACCTTCTTCTATTAGCAATGCCTGGCTCATTCCTGGA GCTTCTTTTACTGTAAAGAAGAGTGATTGTTCCATCAAATGTAGCTTTTCGCGTAAAGCTGGGAAACAGATTCTATCATCAACGCAGAGACTTGTGTTAC CTTTGTCGACTTCACTTAGATTGTTTCCTACACATGGAAGGCAGTTTGTGTTGCATCCTCATCGTAGAGCTACTGGGACTGATGTTGTGGCGGCTGTAGA GGAACAAGATTCTACTCCTGTTGTTGCGGAGGATAAAGAAACCGTGGCTAGTGAGAAGTCAGATGCTCCTGCTCCAACATCTCAGTCAAGGGGAACAGCA AGACCTGGAAGGAAGAGTGAGATGCCTGCGGTTAAGAACGAGGAGCTGGTTCCTGGAGCTACTTTCACTGGGAAAGTACGAGCTATTCAGCCTTTTGGAG CTTTTGTTGATTTTGGTGCTTTTACTGATGGATTAGTCCATGTTTCTCAATTGAGTGACAACTTTGTTAAGGATGTTTCGAGTGTTGTCACTATTGGACA AGAGGTGAAGGTAAGGCTAGTGGAAGCTGACATTGAGTCAAAACGTATTTCTTTAACTATGCGTGAGAATGATGATCCTCCTAAGCGTCAGTCTGGTGGT AGTGATAAGCCGAGATCAGGAGGGAAAAGGGATGGTTCTAAAGGAGGAGGACAGAGGAAGGGAGAAGGGTTTAACTCAAAGTTTGCCAAAGGGCAGATGT TGGATGGAGTGGTCAAGAATTTAACGAGGTCAGGAGCGTTTATAACTATAGGAGAAGGCGAAGAAGGGTTTTTACCGACGGCTGAGGAAGCAGATGATGG TATTGGAAGCATGATGATGGGTGGCTCTTCGTTGCAAGCTGGACAAGAGGTGAAGGTTCGTGTGTTGAGGATAGCAAGGGGACGTGTTACTTTAACAATG AAAGAGGAAGATGATGGTAAGTTTGATGAAACAACCACTCAGGGAGTTGTGCATACAGCCACAAATCCGTTTATGCTTGCTTTCCGTAAGAACGAAGAGA TTGCTGCGTTTCTTGACAAGAGGGAGGAAGAGGCAGAGAAGCCACCTGTTGAGACACCAGTAGAGCCTGAAGCTGAAGCCTCTGTCACCTCAGCTGAAGT CGAGGAATCGGTATGTGTCCCAGCTGAAGTAACAAGTGAAGAGGTTCCCTCGTCAGAAACTCCCAAGGTAGTAGAAGAAGAAGTGATAGCTACCAAAGCT GAAGATGATTCGCCGGAAAAAGAAGAGCAAACGGAAACACTTGCTGCAGCAGCTGAAGCTGAAGAGGTGGTTCCTCCAATTCCAGAAACCAAAAgtaagt tgactaaaaatcactagattgtaattttttttgtgtgctacttctcatattggtttattatgatcagtatcagtttatcagaatcatttaaaaagattat acaatgtttgtatcttagaactctatccaaggtaacatatacagctaaagcgttggggatactccaaattatagtagagaccttaaccacataaatagtc acatgaactacgtgttctaaaaaaatccagaataatcaaattcatgaagttttgtttgatggagcaaaaggtgataagaaacatataagaccacaaagat aaagacattttagttcattgtgtaatgattactagcattgacccttttcttctaccggtgaccagGTGAAGAGGAAATTGTTGAGAACTCTATTCCTCCA AACTCAGCCACTGATGAAGTTTCATCTCCAGAAGCTTTAGCAAGTGAAGAGGTTGAGAAGGAGCAAGTGGTTGCCGAAACACCTGTTGATGAAGTCAAGA CTCCTGCACCTGTAGTCACAGAAGCTTCTTCTGAGGAAAGTGGCAACACCGCTACTGCTGAAAGCATCAAAGgtccttcttttgtccatcctttacctgt tttacttcctgactcatgacctaatggtttatgtgagattccatctcctaacacaaaaatgtaacagGCATTTCACCAGCTCTAGTGAAGCAGCTGAGAG AAGAAACAGGGGCAGGAATGATGGACTGCAAGAATGCTCTTTCAGAGAGTGAGGGCGATATGGTCAAAGCTCAAGAGTACCTCCGCAAGAAGGGACTAGC GAGCGCAGATAAGAAAGCAAGCAGAGCCACATCCGAGGGAAGAATTGGTGCTTATATCCACGACAGCAGAATCGGTGTCCTCTTGGAGGTTAATTGTGAG ACTGATTTTGTCTCACGTGGCGACATTTTCAAGGAACTTGTTGATGATCTGGCGATGCAGgtaactccaagtttctagctgaaacattttcttcgttttg ctataactgagaatataatttgacctgacatgtagGTGGCTGCGTGTCCTCAAGTAGAGTATCTTGTAACAGAAGATGTTTCAGAAGAAATTGTGAAGAA AGAAAAAGAGATAGAGATGCAAAAGGAAGATCTTTTGTCGAAACCGGAACAAATAAGGGAGAAGATAGTGGACGGTCGGATAAAGAAAAGGCTAGATTCA CTTGCATTGCTTGAGCAACCATACATTAAAGACGATAAGGTGATAGTTAAGGATCTTGTAAAGCAGAGGATTGCAACCATTGGAGAAAACATCAAAGTGA AGAGATTTGTGAGGTACACTCTCGGAGAAGGCCTTGAGAAGAAAAGCCAGGACTTTGCTGCTGAGGTTGCTGCCCAAACTGCAGCTAAACCGAAAGCTAA AGAAGAGCCAAAAGCTGAAGAGGCCAAGGAAGCTGTTGCAAGgtgagaaattttttatagtctttgctcttcttgacatgaattcttataatgttggcta tagaaagattcaaactttttgcaatacggcactgcagCCCACCAACTACAGTGGTTTCAGCTGCTCTTGTAAAGCAACTGCGTGAAGAGACAGGAGCTGG AATGATGGATTGCAAGAAGGCATTGGCGGCGACAGGAGGAGATCTTGAGAAAGCACAAGAATTCCTCAGAAAGAAGGGTCTCTCATCAGCTGATAAAAAA TCAAGCCGGCTTGCATCAGAAGGGAGAATCGGTTCGTACATCCACGATTCTCGGATTGGAGTTCTGATAGAAGTGAACTGTGAGACTGACTTTGTCGGAA GAAGCGAAAAATTCAAGGAATTGGTTGATGATCTTGCAATGCAAGCAGTGGCTAATCCACAGgtaagaaaatgtcctcagctgaaacaatggcataaatt ggttgttggtctctgacctgaaatgtctacgtgcagGTGCAATATGTTTCAATAGAGGACATTCCAGAGGAGATAAAGCAGAAAGAAAAAGAGATTGAGA T◄GCAAAGAGAGGATCTTTTGTCGAAACCA◄GAGAACATAAGGGAGAAGATTGTGGAAGGAAGAATCTCAAAGAGGCTTGGAGAATGGGCATTGCTTGAG CAGCCTTACATCAAAGACGACAGTGTTCTGGTGAAGGATCTGGTGAAGCAAACAGTGGCTACTCTTGGGGAAAACATCAAAGTCAGAAGGTTTGTGAAGT TTACTCTTGGAGAAGATAACTGAtgagacagacgaagtaaagttttcaaataagggagctctgttttgtgtcatggagtttaaagtaaaagtcttccttt ttgttttgtagacaaaatcttcagtattcacattttgattagtttttaatcaaaacctgtaattttttgttcatgaaaatatgagatttgcattatataa atgtgcatttagtgacaatgtgacattatacactaaattcggagaaagattggttataatgaaa►ttttaaaccttat►tttaaatagaagtttcaaatg aatttccctgaagaagtgaaactaaataaaataattttttgtttccttttggatattatatctaaatataaaaatcaaaccgaccgaattactacataca ctacaataatgtttttttccttttataatttgtgggctaaaaaaggtcggtcggcccattttgagcccaataaaatttagggatagataaagacataaag taacgaacgatattccgaggttgtcatttgctaaggaaaaaaaaaacgaaaacgtgtgtctgtctcttctcgtagcgtctctcaagctcaggttcgtgaa catt
Border_1 (129824_LBD)
CTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTG
TCTAAGCGTCAATTTGTTTACACCACAATATATCCTGAATCTCAATCTCTTTTTCTTTCTGCTTTATCTCCTCTGGAATGTCCTCTATTGAAACATATTG
CACCTGCACGTAGACATTTCAGGTCAGAGACCAACAACCAATTTATGCCATTGTTTCAGCTGAGGACATTTTCTTACCTGTGGATTAGCCACTGCTTGCA
TTGCAAGATCATCAACCAATTCCTTGAATTTTTCGCTTCTTCCGACAAAGTCAGTCTCACAGTTCACTTCTATCAGAACTCCAATCCGAGAATCGTGGAT
GTACGAACCGATTCTCCCTTCTGATGCAAGCCGGCTTGATTTTTTATCAGCTGATGAGAGACCCTTCTTTCTGAGGAATTCTTGTGCTTTCTCAAGATCT
CCTCCTGTCGCCGCCAATGCCTTCTTGCAATCCATCATTCCAGCTCCTGTCTCTTCACGCAGTTGCTTTACAAGAGCAGCTGAAACCACTGTAGTTGGTG
GGCTGCAGTGCCGTATTGCAAAAAGTTTGAATC:TTTCTATAGCCAACATTATAAGAATTCATGTCAA:GAAGAGCAAAGACTATAAAAAA:TTTCTCAC
CTTGCAACAGCTTCCTTGGCCTCTTCA:GCTTTT:GGCTCTTCTTTAGCTTTCGGTTTAGCTGCAGTTTGGGCAGCAACCTCAGMAGCAAAGTCCTGGCT
TTTCTTCTCAAGGCCTTCTCCGAGAGTGG
| Start of BLAST Alignment: | NT 3380 / Exon 7 of 7 |
| First 15 bp Perfect Match: | NT 3352 / Exon 7 of 7 |
BLAST Details: Query Sequence: 129824_LBD Length: (824 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g29060 68417.t03858 elongation factor Ts family protei... 3435 4.5e-151 1 At4g11120 68417.t01714 translation elongation factor Ts (... 237 0.027 1 At3g06500 68416.t00685 beta-fructofuranosidase, putative ... 187 0.999 1 At5g40760 68418.t04607 glucose-6-phosphate 1-dehydrogenas... 186 0.9994 1 >At4g29060 68417.t03858 elongation factor Ts family protein similar to SP|P35019 Elongation factor Ts (EF-Ts) {Galdieria sulphuraria}; contains Pfam profiles PF00627: UBA/TS-N domain, PF00889: Elongation factor TS, PF00575: S1 RNA binding domain Length = 4312 Minus Strand HSPs: Score = 3435 (521.4 bits), Expect = 4.5e-151, P = 4.5e-151 Identities = 700/713 (98%), Positives = 701/713 (98%), Strand = Minus / Plus Query: 823 CACTCTCGGAGAAGGCCTTGAGAAGAAAAGCCAGGACTTTGCTKCTGAGGTTGCTGCCCA 764 |||||||||||||||||||||||||||||||||||||||||||+|||||||||||||||| Sbjct: 3156 CACTCTCGGAGAAGGCCTTGAGAAGAAAAGCCAGGACTTTGCTGCTGAGGTTGCTGCCCA 3215 Query: 763 AACTGCAGCTAAACCGAAAGCTAAAGAAGAGCCAAAAGCTGAAGAGGCCAAGGAAGCTGT 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3216 AACTGCAGCTAAACCGAAAGCTAAAGAAGAGCCAAAAGCTGAAGAGGCCAAGGAAGCTGT 3275 Query: 703 TGCAAGGTGAGAAATTTTTTATAGTCTTTGCTCTTCTTGACATGAATTCTTATAATGTTG 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3276 TGCAAGGTGAGAAATTTTTTATAGTCTTTGCTCTTCTTGACATGAATTCTTATAATGTTG 3335 Query: 643 GCTATAGAAAGATTCAAACTTTTTGCAATACGGCACTGCAGCCCACCAACTACAGTGGTT 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3336 GCTATAGAAAGATTCAAACTTTTTGCAATACGGCACTGCAGCCCACCAACTACAGTGGTT 3395 Query: 583 TCAGCTGCTCTTGTAAAGCAACTGCGTGAAGAGACAGGAGCTGGAATGATGGATTGCAAG 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3396 TCAGCTGCTCTTGTAAAGCAACTGCGTGAAGAGACAGGAGCTGGAATGATGGATTGCAAG 3455 Query: 523 AAGGCATTGGCGGCGACAGGAGGAGATCTTGAGAAAGCACAAGAATTCCTCAGAAAGAAG 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3456 AAGGCATTGGCGGCGACAGGAGGAGATCTTGAGAAAGCACAAGAATTCCTCAGAAAGAAG 3515 Query: 463 GGTCTCTCATCAGCTGATAAAAAATCAAGCCGGCTTGCATCAGAAGGGAGAATCGGTTCG 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3516 GGTCTCTCATCAGCTGATAAAAAATCAAGCCGGCTTGCATCAGAAGGGAGAATCGGTTCG 3575 Query: 403 TACATCCACGATTCTCGGATTGGAGTTCTGATAGAAGTGAACTGTGAGACTGACTTTGTC 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3576 TACATCCACGATTCTCGGATTGGAGTTCTGATAGAAGTGAACTGTGAGACTGACTTTGTC 3635 Query: 343 GGAAGAAGCGAAAAATTCAAGGAATTGGTTGATGATCTTGCAATGCAAGCAGTGGCTAAT 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3636 GGAAGAAGCGAAAAATTCAAGGAATTGGTTGATGATCTTGCAATGCAAGCAGTGGCTAAT 3695 Query: 283 CCACAGGTAAGAAAATGTCCTCAGCTGAAACAATGGCATAAATTGGTTGTTGGTCTCTGA 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3696 CCACAGGTAAGAAAATGTCCTCAGCTGAAACAATGGCATAAATTGGTTGTTGGTCTCTGA 3755 Query: 223 CCTGAAATGTCTACGTGCAGGTGCAATATGTTTCAATAGAGGACATTCCAGAGGAGATAA 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3756 CCTGAAATGTCTACGTGCAGGTGCAATATGTTTCAATAGAGGACATTCCAGAGGAGATAA 3815 Query: 163 AGCAGAAAGAAAAAGAGATTGAGATTCAG-GATAT-AT-TGTGGTGTAAACAA 114 ||||||||||||||||||||||||| || || | || | | || |||| | Sbjct: 3816 AGCAGAAAGAAAAAGAGATTGAGATGCAAAGAGAGGATCTTTTGTCGAAACCA 3868 >At4g11120 68417.t01714 translation elongation factor Ts (EF-Ts), putative similar to ethylene-responsive elongation factor EF-Ts precursor [Lycopersicon esculentum] GI:5669636; contains Pfam profile PF00889: Elongation factor TS Length = 2363 Minus Strand HSPs: Score = 237 (41.6 bits), Expect = 0.028, P = 0.027 Identities = 121/201 (60%), Positives = 121/201 (60%), Strand = Minus / Plus
Border_2 (129824_RBU)
TTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAAWTTYACAC
AGGAAACAGCTATGACCATGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTT
CCCGCCTTCAGTTTATGAAGCGTCATTTAAATAGAAGTTTCAAATGAATTTCCCTGAAGAAGTGAAACTAAATAAAATAATTTTTTGTTTCCTTTTGGAT
ATTATATCTAAATATAAAAATCAAACCGACCGAATTACTACATACACTACAATAATGTTTTTTTCCTTTTATAATTTGTGGGCTAAAAAAGGTCGGTCGG
CCCATTTTGAGCCCAATAAAATTTAGGGATAGATAAAGACATAAAGTAACGAACGATATTCCGAGGTTGTCATTTGCTAAGGAAAAAAAAANCAAAANCG
GGGGTNTGTCTNTTNTCGAAGCGNCTNTNAAGCTNAGGTTCGGNANCATTCCAATNTNTNAANGCAAAAGCTNATTCAAATNATCCTTNTNTGTTATTTT
CNAAATCCNATTNACTNTTNTTTACNAGCNAATTNTAGGGTTTTGAGNATNGATNTTTC
| Start of BLAST Alignment: | NT > 241 / 3’ UTR |
| First 15 bp Perfect Match: | NT > 254 / Downstream |
BLAST Details: Query Sequence: 129824_RBU Length: (659 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F25O24 67173 1836 9.4e-77 1 F19B15 67174 1836 9.4e-77 1 T6C20 68339 674 2.9e-24 1 T2P3 68413 669 4.9e-24 1 F19B15 67174 Length = 101,679 Plus Strand HSPs: Score = 1836 (281.5 bits), Expect = 9.4e-77, P = 9.4e-77 Identities = 394/447 (88%), Positives = 394/447 (88%), Strand = Plus / Plus Query: 213 TTATGAAGCGTCATTTAAATAGAAGTTTCAAATGAATTTCCCTGAAGAAGTGAAACTAAA 272 || | || | | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33164 TTTTAAACCTTATTTTAAATAGAAGTTTCAAATGAATTTCCCTGAAGAAGTGAAACTAAA 33223 Query: 273 TAAAATAATTTTTTGTTTCCTTTTGGATATTATATCTAAATATAAAAATCAAACCGACCG 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33224 TAAAATAATTTTTTGTTTCCTTTTGGATATTATATCTAAATATAAAAATCAAACCGACCG 33283 Query: 333 AATTACTACATACACTACAATAATGTTTTTTTCCTTTTATAATTTGTGGGCTAAAAAAGG 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33284 AATTACTACATACACTACAATAATGTTTTTTTCCTTTTATAATTTGTGGGCTAAAAAAGG 33343 Query: 393 TCGGTCGGCCCATTTTGAGCCCAATAAAATTTAGGGATAGATAAAGACATAAAGTAACGA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33344 TCGGTCGGCCCATTTTGAGCCCAATAAAATTTAGGGATAGATAAAGACATAAAGTAACGA 33403 Query: 453 ACGATATTCCGAGGTTGTCATTTGCTAAGGNNNNNNNNNNCAAAANCGGGGGTNTGTCTN 512 |||||||||||||||||||||||||||||| | ||| || | || ||||| Sbjct: 33404 ACGATATTCCGAGGTTGTCATTTGCTAAGGAAAAAAAAAACGAAAACGTGTGTCTGTCTC 33463 Query: 513 TTNTCGAAGCGNCTNTNAAGCTNAGGTTCGGNANCATTCCAATNTNTNAANGCAAAAGCT 572 || ||| |||| || | ||||| ||||||| | ||||||||| | | || ||||||||| Sbjct: 33464 TTCTCGTAGCGTCTCTCAAGCTCAGGTTCGTGAACATTCCAATCTCTCAATGCAAAAGCT 33523 Query: 573 NATTCAAATNATCCTTNTNTGTTATTTTCNAAATCCNATTNACTNTTNTTTACNAGCNAA 632 |||| ||| |||||| | |||||||||| | |||| ||| ||| || ||||| || || Sbjct: 33524 CATTCGAATTATCCTTCTCTGTTATTTTCGAGATCCGATTTACTCTTCTTTACTAGTCAA 33583 Query: 633 TTNTAGGGTTTTGAGNATNGATNTTTC 659 || |||||||||||| || ||| |||| Sbjct: 33584 TTCTAGGGTTTTGAGTATTGATCTTTC 33610 T6C20 68339 Length = 80,593 Minus Strand HSPs: Score = 674 (107.2 bits), Expect = 2.9e-24, P = 2.9e-24 Identities = 226/320 (70%), Positives = 228/320 (71%), Strand = Minus / Plus