At4g33990 SYNGENTA 131461
Genomic Sequence (from TAIR)
tacaaacaaacatacttttggttcagatcatgtgtttccctcttgcaagccattctctattggtcagtacaaaaaactccgtctaggcgtctagccaacg gctatatatttgggcttaaccaagctaccaaactatttgggccttattgggctctaatcttactcgtcttaaagtttagtgctttagaccgcacggttta caaaaccaaaccgggttcaattaaattacaaaccgcaatcaaagaagaaaagctgacggccgtcgctaaaccctccggcggactcttcaattcaccgtcg aaaatcaccaacccgattataccatctcttttagtctctcatctctacttctctaagctaaccgaaaccttttggtgggaatcgtcgaaagttttcaaga cacctgaattgcatgtatgttgaggtatatatataaatgtatagattttctctgagtatttctcttcttccctcgaaaatttgATGAAATTTGGAACCTT TTCACTTCCCAGACAAATTCCAACCTGCAAAGGTGGGCGCTTTACACGAGTTTTGCAATCTATCGGATCAGTTATTAGAGAATTTTCAGCATCTGCAAAT GCTTTGCAAGACTGTTGGAAAAATGGGAATGAAAGTAAAGAGATTGATGATGTTCACACACTTTTCAGATATTGCACTAATTTGCAATCAGCCAAATGTC TCCACGCACGTCTCGTTGTCTCCAAACAAATCCAAAATGTTTGTATCTCTGCTAAACTTGTTAATCTCTATTGTTACCTTGGCAATGTCGCATTGGCTAG GCACACGTTTGATCATATCCAGAACAGAGATGTATACGCTTGGAATTTGATGATTTCTGGTTATGGCCGTGCGGGAAATTCTTCAGAAGTGATTAGGTGT TTTAGTCTCTTTATGTTGAGTTCTGGACTTACACCTGATTACAGGACTTTTCCTTCGGTTTTGAAAGCTTGTAGGACTGTGATTGATGGGAATAAGATTC ATTGCTTGGCTTTGAAGTTTGGGTTTATGTGGGATGTCTATGTTGCTGCCTCGTTGATTCATTTGTACTCTCGATATAAAGCTGTGGGGAATGCACGTAT ACTGTTTGATGAAATGCCTGTAAGAGATATGGGTTCTTGGAATGCAATGATTTCTGGGTATTGTCAAAGCGGAAATGCTAAAGAGGCGTTAACTCTGTCT AATGGGTTGAGAGCTATGGATTCAGTTACCGTTGTGAGTCTCCTTTCGGCTTGCACTGAAGCCGGTGATTTCAATAGAGGAGTTACTATTCATTCATACT CGATAAAACATGGTCTGGAGTCCGAATTGTTTGTTTCCAACAAGCTGATTGATTTGTATGCTGAATTTGGTAGGCTTAGGGATTGCCAGAAGGTTTTTGA TAGGATGTATGTGAGGGATTTGATTTCTTGGAATTCGATAATTAAGGCGTACGAGCTGAATGAGCAGCCGCTTAGAGCGATTTCGTTGTTTCAGGAGATG CGGTTGAGTAGAATTCAACCAGATTGCCTTACTTTGATTAGTTTGGCTTCTATACTATCACAGTTAGGGGACATTCGTGCTTGTAGATCTGTGCAGGGTT TCACTTTGAGGAAAGGCTGGTTCTTGGAAGATATTACCATCGGGAATGCTGTTGTGGTTATGTATGCAAAACTAGGCCTTGTAGATTCAGCAAGAGCAGT GTTTAATTGGCTTCCGAATACAGATGTTATTTCATGGAATACCATAATCTCGGGTTATGCTCAAAACGGTTTTGCTAGTGAAGCAATTGAAATGTATAAC ATAATGGAGGA◄AGAAGGTG◄AAATAGCCGCTAACCAAGGGACTTGGG►TGAGTGTTTTGCCCGCTTGTTCGCAGGCTGGAGCGTTGCGTCAAGGTATGA AACTCCATGGCCGTCTCTTGAAGAACGGTCTTTATTTGGATGTTTTTGTTGTTACAAGCCTTGCTGATATGTATGGAAAGTGTGGACGACTAGAGGATGC CCTCTCTTTGTTTTATCAAATCCCAAGAGTCAACTCTGTGCCATGGAACACCCTAATAGCGTGTCACGGGTTTCACGGGCATGGCGAGAAAGCAGTGATG CTGTTCAAAGAAATGCTGGATGAAGGAGTGAAGCCAGATCACATTACATTTGTGACTCTGTTATCGGCTTGTAGCCATTCTGGGTTAGTAGACGAGGGTC AATGGTGCTTTGAGATGATGCAAACGGATTATGGGATAACACCGAGCTTGAAACATTACGGTTGTATGGTAGATATGTATGGTCGAGCTGGTCAGTTAGA AACCGCGTTGAAGTTTATAAAAAGTATGTCGCTTCAGCCTGATGCATCCATTTGGGGAGCTCTTCTCAGCGCTTGTAGAGTCCATGGGAATGTTGATCTT GGCAAGATCGCATCTGAACATTTGTTCGAGGTTGAACCTGAGCATGTCGGGTATCATGTTCTATTGTCAAACATGTATGCTAGTGCTGGAAAATGGGAAG GAGTTGATGAAATACGTTCAATAGCCCATGGCAAAGGTTTGAGGAAGACACCGGGTTGGAGCTCAATGGAAGTAGACAACAAAGTCGAAGTCTTTTACAC GGGAAACCAAACGCATCCAATGTATGAAGAGATGTACAGAGAATTAACGGCATTACAAGCGAAACTGAAGATGATTGGGTATGTACCGGACCATAGATTT GTGTTGCAGGATGTTGAAGACGACGAGAAAGAGCATATCCTCATGAGTCATAGTGAAAGATTAGCTATTGCATTTGCACTTATCGCCACTCCTGCAAAGA CAACGATTCGGATTTTTAAGAATCTAAGGGTATGCGGCGATTGCCATAGCGTAACCAAGTTCATATCGAAAATCACTGAGAGAGAGATCATTGTGAGGGA TTCAAACCGGTTTCATCATTTCAAGAATGGAGTCTGCTCTTGCGGTGATTACTGGTGAcggcatagaaaaccgattagtcaatatccaaaaaccggttcc aattcaattgtgaaccggttaatcatggtctaggaagactttgggtgggaaaaagattccaactttgcttacgaaggttaagtcgcaacaaagaaagctt ctttatttccgccatggacacagcctgtcgtagtcatgtggacagcttgtggtttactttagcagaaagtcactcgcaaaggacgagacgtgtgaacggt ttcaatcgttgaatcctcaacgtttggttataatagtttattaagttacctaaaagaaggaactttgtttttcctctttaaaagaaaatatctttttgag agtaaacaatttagttgaaacaatgtaatcagtctttttttaattagtttgtcggaggtaataattacataaacacacatcgaagctggtggtaatcgtt taa
Border_1 (131461_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTCCATTATGTTATACATTTCAATTGCTTCACTAGCAAAACCGTTTTGAGCATAACCCGAGATTATGGTATTCCATGAAATAACATCTGTATTCGGAAG
CCAATTAAACACTGCTCTTGCTGAATCTACAAGGCCTAGTTTTGCATACATAACCACAACAGCATTCCCGATGGTAATATCTTCCAAGAACCAGCCTTTC
CTCAAAGTGAAACCCTGCACAGATCTACAAGCACGAATGTCCCCTAACTGTGATAGTATAGAAGCCAAACTAATCAAAGTAAGGCAATCTGGTTGAATTC
TACTCAACCGCATCTCCTGAAACAACGAAATCGCTCTAAGCGGCTGCTCATTCAGCTCGTACGCCTTAATTATCGAATTCCAAGAAATCAAATCCCTCAC
ATACATCCTATCAAAAACCTTCTGGCAATCCCTAAGCCTACCAAATTCAGCATACAAATCAATCAGCTTGTTGGAAACAAACAATTCGGACTCCAGACCA
TGTTTTATCGAGTATGAATGAATAGTAACTCCTCTATTGAAATCACCGGCTTCAGTGCAAGCCGAAAGGAGACTCACAACGGTAACTGAATCCATAGCTC
TCAACCCATTAGACAGAGTTAACGCCTCTTTAGCATTTCCGCTTTGACAATACCC
| Start of BLAST Alignment: | NT 1336 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 1328 / Exon 1 of 1 |
BLAST Details: Query Sequence: 131461_LB2 Length: (855 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g33990 68417.t04445 pentatricopeptide (PPR) repeat-con... 3283 5.7e-144 1 At3g12770 68416.t01414 pentatricopeptide (PPR) repeat-con... 553 2.6e-19 1 At4g18750 68417.t02609 pentatricopeptide (PPR) repeat-con... 550 3.7e-19 1 At2g17210 68415.t01884 pentatricopeptide (PPR) repeat-con... 544 6.3e-19 1 >At4g33990 68417.t04445 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2472 Minus Strand HSPs: Score = 3283 (498.6 bits), Expect = 5.7e-144, P = 5.7e-144 Identities = 661/665 (99%), Positives = 661/665 (99%), Strand = Minus / Plus Query: 855 GGGTATTGTCAAAGCGGAAATGCTAAAGAGGCGTTAACTCTGTCTAATGGGTTGAGAGCT 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 GGGTATTGTCAAAGCGGAAATGCTAAAGAGGCGTTAACTCTGTCTAATGGGTTGAGAGCT 732 Query: 795 ATGGATTCAGTTACCGTTGTGAGTCTCCTTTCGGCTTGCACTGAAGCCGGTGATTTCAAT 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 733 ATGGATTCAGTTACCGTTGTGAGTCTCCTTTCGGCTTGCACTGAAGCCGGTGATTTCAAT 792 Query: 735 AGAGGAGTTACTATTCATTCATACTCGATAAAACATGGTCTGGAGTCCGAATTGTTTGTT 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 793 AGAGGAGTTACTATTCATTCATACTCGATAAAACATGGTCTGGAGTCCGAATTGTTTGTT 852 Query: 675 TCCAACAAGCTGATTGATTTGTATGCTGAATTTGGTAGGCTTAGGGATTGCCAGAAGGTT 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 853 TCCAACAAGCTGATTGATTTGTATGCTGAATTTGGTAGGCTTAGGGATTGCCAGAAGGTT 912 Query: 615 TTTGATAGGATGTATGTGAGGGATTTGATTTCTTGGAATTCGATAATTAAGGCGTACGAG 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 913 TTTGATAGGATGTATGTGAGGGATTTGATTTCTTGGAATTCGATAATTAAGGCGTACGAG 972 Query: 555 CTGAATGAGCAGCCGCTTAGAGCGATTTCGTTGTTTCAGGAGATGCGGTTGAGTAGAATT 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 CTGAATGAGCAGCCGCTTAGAGCGATTTCGTTGTTTCAGGAGATGCGGTTGAGTAGAATT 1032 Query: 495 CAACCAGATTGCCTTACTTTGATTAGTTTGGCTTCTATACTATCACAGTTAGGGGACATT 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1033 CAACCAGATTGCCTTACTTTGATTAGTTTGGCTTCTATACTATCACAGTTAGGGGACATT 1092 Query: 435 CGTGCTTGTAGATCTGTGCAGGGTTTCACTTTGAGGAAAGGCTGGTTCTTGGAAGATATT 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 CGTGCTTGTAGATCTGTGCAGGGTTTCACTTTGAGGAAAGGCTGGTTCTTGGAAGATATT 1152 Query: 375 ACCATCGGGAATGCTGTTGTGGTTATGTATGCAAAACTAGGCCTTGTAGATTCAGCAAGA 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 ACCATCGGGAATGCTGTTGTGGTTATGTATGCAAAACTAGGCCTTGTAGATTCAGCAAGA 1212 Query: 315 GCAGTGTTTAATTGGCTTCCGAATACAGATGTTATTTCATGGAATACCATAATCTCGGGT 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 GCAGTGTTTAATTGGCTTCCGAATACAGATGTTATTTCATGGAATACCATAATCTCGGGT 1272 Query: 255 TATGCTCAAAACGGTTTTGCTAGTGAAGCAATTGAAATGTATAACATAATGGAGGATATA 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 1273 TATGCTCAAAACGGTTTTGCTAGTGAAGCAATTGAAATGTATAACATAATGGAGGA-AGA 1331 Query: 195 TTGTG 191 ||| Sbjct: 1332 AGGTG 1336 >At3g12770 68416.t01414 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 2364 Minus Strand HSPs: Score = 553 (89.0 bits), Expect = 2.6e-19, P = 2.6e-19 Identities = 375/632 (59%), Positives = 375/632 (59%), Strand = Minus / Plus
Border_2 (131461_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATGTGTTAATTCAACGGTTTTG
AGTGTTTTGCCCGCTTGTTCGCAGGCTGGAGCGTTGCGTCAAGGTATGAAACTCCATGGCCGTCTCTTGAAGAACGGTCTTTATTTGGATGTTTTTGTTG
TTACAAGCCTTGCTGATATGTATGGAAAGTGTGGACGACTAGAGGATGCCCTCTCTTTGTTTTATCAAATCCCAAGAGTCAACTCTGTGCCATGGAACAC
CCTAATAGCGTGTCACGGGTTTCACGGGCATGGCGAGAAAGCAGTGATGCTGTTCAAAGAAATGCTGGATGAAGGAGTGAAGCCAGATCACATTACATTT
GTGACTCTGTTATCGGCTTGTAGCCATTCTGGGTTAGTAGACGAGGGTCAATGGTGCTTTGAGATGATGCAAACGGATTATGGGATAACACCAA
| Start of BLAST Alignment: | NT 1363 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 1363 / Exon 1 of 1 |
BLAST Details: Query Sequence: 131461_LB Length: (594 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g33990 68417.t04445 pentatricopeptide (PPR) repeat-con... 1971 1.0e-84 1 At4g18750 68417.t02609 pentatricopeptide (PPR) repeat-con... 432 9.0e-14 1 At3g57430 68416.t05920 pentatricopeptide (PPR) repeat-con... 432 9.3e-14 1 At3g29230 68416.t03335 pentatricopeptide (PPR) repeat-con... 425 1.5e-13 1 >At4g33990 68417.t04445 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2472 Plus Strand HSPs: Score = 1971 (301.8 bits), Expect = 1.0e-84, P = 1.0e-84 Identities = 395/396 (99%), Positives = 395/396 (99%), Strand = Plus / Plus Query: 199 TGAGTGTTTTGCCCGCTTGTTCGCAGGCTGGAGCGTTGCGTCAAGGTATGAAACTCCATG 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1364 TGAGTGTTTTGCCCGCTTGTTCGCAGGCTGGAGCGTTGCGTCAAGGTATGAAACTCCATG 1423 Query: 259 GCCGTCTCTTGAAGAACGGTCTTTATTTGGATGTTTTTGTTGTTACAAGCCTTGCTGATA 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1424 GCCGTCTCTTGAAGAACGGTCTTTATTTGGATGTTTTTGTTGTTACAAGCCTTGCTGATA 1483 Query: 319 TGTATGGAAAGTGTGGACGACTAGAGGATGCCCTCTCTTTGTTTTATCAAATCCCAAGAG 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1484 TGTATGGAAAGTGTGGACGACTAGAGGATGCCCTCTCTTTGTTTTATCAAATCCCAAGAG 1543 Query: 379 TCAACTCTGTGCCATGGAACACCCTAATAGCGTGTCACGGGTTTCACGGGCATGGCGAGA 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1544 TCAACTCTGTGCCATGGAACACCCTAATAGCGTGTCACGGGTTTCACGGGCATGGCGAGA 1603 Query: 439 AAGCAGTGATGCTGTTCAAAGAAATGCTGGATGAAGGAGTGAAGCCAGATCACATTACAT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1604 AAGCAGTGATGCTGTTCAAAGAAATGCTGGATGAAGGAGTGAAGCCAGATCACATTACAT 1663 Query: 499 TTGTGACTCTGTTATCGGCTTGTAGCCATTCTGGGTTAGTAGACGAGGGTCAATGGTGCT 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1664 TTGTGACTCTGTTATCGGCTTGTAGCCATTCTGGGTTAGTAGACGAGGGTCAATGGTGCT 1723 Query: 559 TTGAGATGATGCAAACGGATTATGGGATAACACCAA 594 |||||||||||||||||||||||||||||||||| | Sbjct: 1724 TTGAGATGATGCAAACGGATTATGGGATAACACCGA 1759 >At4g18750 68417.t02609 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 2616 Plus Strand HSPs: Score = 432 (70.9 bits), Expect = 9.0e-14, P = 9.0e-14 Identities = 246/399 (61%), Positives = 246/399 (61%), Strand = Plus / Plus