At4g33460 SYNGENTA 132426
Genomic Sequence (from TAIR)
caacaagatcggcagaataggcttccaatttttttaaattcttactaaaattcaatatttcactgctatttttccttttttatttatttattttgttata taaataattttgatggttaattttttgtgagtcaaatcccaattattaaatttcgaaagcaaattcatgattacatgtgatttcgaaatttaaacgctca gcttcaaattataccgtaacgtcggcactagaaaaccgaaataaaattcgaaataaacctcaaaccgtatcaaaccgaaccggatgatatcgatttgaaa accggactggcttggattgaacaagcgaagcaacgagagaaagtatctacggtttctctgttgcttgtattttttgtgtgtcgattcgacgaagcttatt tttatggttttgcgaggaagaagaagaagaaggaagctgcaatttcaagtctttaaagagaattcttgaaaatccttaagagaaATGAATGGTCACTGTT TATTTGCAGCATCTCCTCCTCGTCTCTTCCCTCTTCGCTCTATATCATCGAGTGTTTCTCCATCCGGTAGTTACAGAATCAAATTCTCCGATAATGTCGC CGTTGAGTGTCGGAATCTCTGTTTCTCCGTTAGTACAAGACAAGGTATATCTGTTCCTATTCTCCGTGATTGCTCCTTTCGGATTCCTTCTGGACAATTG TGGATGATTCTTGGTCCTAATGGCTGTGGCAAATCCACCCTTTTGAAGgtctttctcttttctcttaaacattgcatttgcagagcaaagacttaagctt ttgttaatgaagtatcattattcttacttaagtcatccttcaatctggtgtagactaggtttgctagttgctactttgggcagaatcttagatcatcaca ctgtttagtgcaatagctaatcttggcatttataacatgaaactcaaagagcattcaaatctttggatgctgtttgtatgtgtaactaagactgattaca aagaaatgccagttaaactgtttgatctacattaactgcttggaactctgcagATTTTAGCTGGTGTAGTGAATCCATCCAGTGGCACTGTCTTTGTGGA GAAGCCGAAGAATTTTGTATTTCAGAATCCTGATCATCAGgttaagtttcttgcttttgcaatgtgaatcatgtgtttgattttatcttgaaggatctta cttttttcccatctttgttttctttattgtgaagtgttctttctgatttgtattgctgttttatagttgagtaggcttgtgtggttgagcgtctttttcc atatcacagacagccttaatccaaatctttaattatcctcgaaaagctagatatgctaatgacatcgagaagagtcattttgttgtcacatctgagggag atcagttagtaacagttggattttgattcaagtaaaaccgctcattctggtcacatctgaacgttcttgttcatcgcagGTAGTGATGCCTACAGTGGAA GCTGATGTGGCATTTGGTCTTGGCAAGTATCATGACATGAATCAGGAAGAAGTTAAGTCTAGGGTGATTAAAGCTTTGGAGGCTGTTGGTATGCGTGATT ATATGCAGgtcagtttatgtacattgaacaacaataagttgtttatatcttctagttccttttactaaagtatagattttggtgttgtttccagAGACCG ATTCAAACTCTCAGTGGTGGTCAGAAACAAAGAATTGCCATTGCTGGTGCTTTAGCTGAAGCGTGCAAAGTGCTATTGTTGGATGAGCTCACAACTTTCC TAGATGAGTCTGACCAGgtaaggtttgattaattctaacaacgtgctaatgaaacacaactagtattgcaagggaacccttccataactggaatatttca acatcgacatatgattgtgttatagtagacattggaagtgagtaacttgcacaattgatatagtatctagaagaaatgaaatgaatttgacagatatgtt atgacgtatacgccttttttaatcagtgcatattgttttctcggggtttttgttctgcagATGGGTGTGATCAAAGCTGTAAAAGATCTGATAAATGCAA AGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAGTATGCGGATGGAGCTGTGTATATGGAGAAC◄G►GTAGA►GTGGTCAG ACATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAATCGTCTTACATTGATCAAATTGGTTCTTAActtcctttgctaaggatttttttc tttattacctctatatatatatagaggtaatgaaaagtcgattatttgctaataatttgtgaaaaattgtgataatatagctctgcagagggtaatgtag ttaggagggctcgaactagagttgaatacgagtaaacctctgttttcccaaagggaaaataaagaatgtttggagaaaactccaggttgtaagtacgtcc ccaagtattgattagtataattaaattatagaaaacaagaaaaagttacgagagaaagttttgtgcatgtgtgactatgtatatgaataatatacataaa aaaagtctaaattatgtgttgtgtgccccctattttgactaataccatttacttcgtcaaagtgatataccaaaaccaaacttgtctttaatcatgctag aatttcaccacgggcatcgctagtaacctgtattaccaagatgtaataaatcttgagaaaacaaaacagattctagaacaaaaggcagagtggattcgtc accgaagctgagaaaggttacttcacttttatgtgaatatcacaaggcttgaggccttacttagatgagtcgacctacataaataaagaagatacattgt gat
Border_1 (132426_RBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGTGTCGTATGTTGTGTGTTGTTTGGCTTTTAATTTGTTCTCCATATACACAGCTCCATCCGCATACTTGAGCTCCTCTAACCTAT
GTGTCACCCATAATGCCGTCACATCTCCTTTCTTTGCATTTATCAGATCTTTTACAGCTTTGATCACACCCATCTGCAGAACAAAAACCCCGAGAAAACA
ATATGCACTGATTAAAAAAGGCGTATACGTCATAACATATCTGTCAAATTCATTTCATTTCTTCTAGATACTATATCAATTGTGCAAGTTACTCACTTCC
AATGTCTACTATAACACAATCATATGTCGATGTTGAAATATTCCAGTTATGGAAGGGTTCCCTTGCAATACTAGTTGTGTTTCATTAGCACGTTGTTAGA
ATTAATCAAACCTTACCTGGTCAGACTCATCTAGGAAAGTTGTGAGCTCATCCAACAATAGCACTTTGCACGCTTCAGCTAAAGCACCAGCAATGGCAAT
TCTTTGTTTCTGACCACCACTGAGAGTTTGAATCGGTCTCTGGAAACAACACCAAAATCTATACTTTAGTAAAAGGAACTAGAAGATATAAACAACTTAT
TGATGTTCAATGTACATAAACTGACCTGCATATAATCACGCATACCAACAGNCTGCAAAGCTTTAATCACCCTAGACTTA
| Start of BLAST Alignment: | NT 1699 / Exon 5 of 5 |
| First 15 bp Perfect Match: | NT 1699 / Exon 5 of 5 |
BLAST Details: Query Sequence: 132426_RBU Length: (880 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g33460 68417.t04381 ABC transporter family protein ABC... 3125 9.3e-137 1 At5g11180 68418.t01190 glutamate receptor family protein ... 211 0.43 1 At2g32730 68415.t03706 26S proteasome regulatory subunit,... 208 0.55 1 At1g70610 68414.t07445 ABC transporter (TAP1) contains Pf... 207 0.58 1 >At4g33460 68417.t04381 ABC transporter family protein ABC-type transport protein sll1623 -Synechocystis,PIR2:S74812 Length = 2079 Minus Strand HSPs: Score = 3125 (474.9 bits), Expect = 9.3e-137, P = 9.3e-137 Identities = 627/630 (99%), Positives = 627/630 (99%), Strand = Minus / Plus Query: 880 TAAGTCTAGGGTGATTAAAGCTTTGCAGNCTGTTGGTATGCGTGATTATATGCAGGTCAG 821 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 1172 TAAGTCTAGGGTGATTAAAGCTTTGGAGGCTGTTGGTATGCGTGATTATATGCAGGTCAG 1231 Query: 820 TTTATGTACATTGAACATCAATAAGTTGTTTATATCTTCTAGTTCCTTTTACTAAAGTAT 761 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 TTTATGTACATTGAACAACAATAAGTTGTTTATATCTTCTAGTTCCTTTTACTAAAGTAT 1291 Query: 760 AGATTTTGGTGTTGTTTCCAGAGACCGATTCAAACTCTCAGTGGTGGTCAGAAACAAAGA 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 AGATTTTGGTGTTGTTTCCAGAGACCGATTCAAACTCTCAGTGGTGGTCAGAAACAAAGA 1351 Query: 700 ATTGCCATTGCTGGTGCTTTAGCTGAAGCGTGCAAAGTGCTATTGTTGGATGAGCTCACA 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 ATTGCCATTGCTGGTGCTTTAGCTGAAGCGTGCAAAGTGCTATTGTTGGATGAGCTCACA 1411 Query: 640 ACTTTCCTAGATGAGTCTGACCAGGTAAGGTTTGATTAATTCTAACAACGTGCTAATGAA 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 ACTTTCCTAGATGAGTCTGACCAGGTAAGGTTTGATTAATTCTAACAACGTGCTAATGAA 1471 Query: 580 ACACAACTAGTATTGCAAGGGAACCCTTCCATAACTGGAATATTTCAACATCGACATATG 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1472 ACACAACTAGTATTGCAAGGGAACCCTTCCATAACTGGAATATTTCAACATCGACATATG 1531 Query: 520 ATTGTGTTATAGTAGACATTGGAAGTGAGTAACTTGCACAATTGATATAGTATCTAGAAG 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 ATTGTGTTATAGTAGACATTGGAAGTGAGTAACTTGCACAATTGATATAGTATCTAGAAG 1591 Query: 460 AAATGAAATGAATTTGACAGATATGTTATGACGTATACGCCTTTTTTAATCAGTGCATAT 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 AAATGAAATGAATTTGACAGATATGTTATGACGTATACGCCTTTTTTAATCAGTGCATAT 1651 Query: 400 TGTTTTCTCGGGGTTTTTGTTCTGCAGATGGGTGTGATCAAAGCTGTAAAAGATCTGATA 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 TGTTTTCTCGGGGTTTTTGTTCTGCAGATGGGTGTGATCAAAGCTGTAAAAGATCTGATA 1711 Query: 340 AATGCAAAGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAG 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1712 AATGCAAAGAAAGGAGATGTGACGGCATTATGGGTGACACATAGGTTAGAGGAGCTCAAG 1771 Query: 280 TATGCGGATGGAGCTGTGTATATGGAGAAC 251 |||||||||||||||||||||||||||||| Sbjct: 1772 TATGCGGATGGAGCTGTGTATATGGAGAAC 1801 >At5g11180 68418.t01190 glutamate receptor family protein (GLR2.6) plant glutamate receptor family, PMID:11379626 Length = 4315 Plus Strand HSPs: Score = 211 (37.7 bits), Expect = 0.57, P = 0.43 Identities = 305/560 (54%), Positives = 305/560 (54%), Strand = Plus / Plus
Border_2 (132426_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTTATGCACATAGGTGTTGTGTGTATGTGGTCAGAC
ATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAATCGTCTTACATTGATCAAATTGGTTCTTAACTTCCTTTGCTAAGGATTTTTTTCTT
TATTACCTCTATATATATATAGAGGTAATGAAAAGTCGATTATTTGCTAANAATTTGNGAAAAATTGNGATAATATAGCTCTGCAGAGGGTAATGTANCT
AGGAGGGCTCGAACTAGAGTTGAATGCGAGCAAACCTCTGTTTTCCCAANGGGAAAATAAAGAATGTTTGGAGAAATCTCCAGGTCGAAAGTACGTCCCC
AAGTANTGATTAGTATAATTAAATTATANAAAACAAGAAAAAGCTACGAGAGAAAGTTNTGTGCATGNNGNGACTATGTATATGAATAATATACATAAAA
AAANGNCTAAATTATGTGNTGTATGCCCCNCTATANAGGACAAATACCATTTTACT
| Start of BLAST Alignment: | NT 1700 / Exon 5 of 5 |
| First 15 bp Perfect Match: | NT 1705 / Exon 5 of 5 |
BLAST Details: Query Sequence: 132426_LBD Length: (656 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g33460 68417.t04381 ABC transporter family protein ABC... 1299 2.8e-54 1 At5g29720 68418.t03334 gypsy-like retrotransposon family ... 211 0.27 1 At3g28070 68416.t03180 nodulin MtN21 family protein simil... 196 0.78 1 At4g37950 68417.t04930 expressed protein 182 0.9994 1 >At4g33460 68417.t04381 ABC transporter family protein ABC-type transport protein sll1623 -Synechocystis,PIR2:S74812 Length = 2079 Plus Strand HSPs: Score = 1299 (201.0 bits), Expect = 2.8e-54, P = 2.8e-54 Identities = 267/277 (96%), Positives = 267/277 (96%), Strand = Plus / Plus Query: 187 GTAT-GTGGTCAGACATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAAT 245 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1803 GTAGAGTGGTCAGACATGGTGATGCAGCCACCATCTCAGATTTCATTAAAGCCAAACAAT 1862 Query: 246 CGTCTTACATTGATCAAATTGGTTCTTAACTTCCTTTGCTAAGGATTTTTTTCTTTATTA 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1863 CGTCTTACATTGATCAAATTGGTTCTTAACTTCCTTTGCTAAGGATTTTTTTCTTTATTA 1922 Query: 306 CCTCTATATATATATAGAGGTAATGAAAAGTCGATTATTTGCTAANAATTTGNGAAAAAT 365 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 1923 CCTCTATATATATATAGAGGTAATGAAAAGTCGATTATTTGCTAATAATTTGTGAAAAAT 1982 Query: 366 TGNGATAATATAGCTCTGCAGAGGGTAATGTANCTAGGAGGGCTCGAACTAGAGTTGAAT 425 || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1983 TGTGATAATATAGCTCTGCAGAGGGTAATGTAGTTAGGAGGGCTCGAACTAGAGTTGAAT 2042 Query: 426 GCGAGCAAACCTCTGTTTTCCCAANGGGAAAATAAAG 462 |||| |||||||||||||||||| |||||||||||| Sbjct: 2043 ACGAGTAAACCTCTGTTTTCCCAAAGGGAAAATAAAG 2079 >At5g29720 68418.t03334 gypsy-like retrotransposon family (Athila) has a 2.7e-94 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) [Arabidopsis thaliana] (Gypsy_Ty3-family) Length = 5445 Plus Strand HSPs: Score = 211 (37.7 bits), Expect = 0.31, P = 0.27 Identities = 165/284 (58%), Positives = 165/284 (58%), Strand = Plus / Plus