PDF Help

At4g28210 SYNGENTA 133038

Genomic Sequence (from TAIR)

CGAGGCGGTATTGAACTACGTCGGCCATggctgctgcttctcgattctcggcggggactgataacggtagggcaaacgcttaatgcttcttcttctttct
tcagttattatataatgggccgtaagagtaagaagctattgggcctacgtctaattttatcacggcccaatgttaaaactcttgctatgagctatttgtt
gttgttctgggggaaaagctttagaagttgaagacgacgATGACGCTTTTAGCTCTCTCTTCTTCTCTGTCTTCTCCTTCCTTCTTCTGCCGCAATTCTC
GTATTCGTTTCTCTCCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTTACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCG
TCGTTTTGTGGCTCCGGGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCCAAAGGTGGGATTGAAGATGACGCG
GAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGgta
cgtttctgcttacttttggcttcgttttagttaccgtgaatcataagtcttgtagcaaaatcaaatttttgttcttgttctcaatcgctgaagcatttct
gactcaagaccctgagattggaatttagggactatactctggtttagcatttgaatagtagtctagtgaattcgagttttgtataccttgttgcatagtt
cgaataagctttggataaatgaagtaacatcttgatcttctgttgtagCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCAA
CTGGAGAAAAGCGGCTTTCGCTATCCTTGCGTTTGTG►GGAGACCTTTCGAAGTTTGCATTGGCTCTTGTCTTCCACTTTATAGGCGATCCCATCACTTC
TCTCATCAGCCTTGTAGAGA◄CTGCAATGTACAGTG►TTAGGGCGTTCTACTCCGGGATTGTGGCTTACACGCCTGTGAGAGAGTTAACCACGGTAATTC
TTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCAATCAGCAAGCAGCCGTATGTGGTAACTATTGCGGGTCTGGTGGGGTATGC
AGCGGTGCAGAGTTATATCTCAGAGCCGTTCTTCTGGACTGTCTTGTTAGGTTTGTATGGGTACTCGCGGTTGATAAAGAAGAGAGACGATGTGACCTCG
GCTCTTCCTTCTGCAGCTGTTCTGGCAGGAGTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTATCACAATTCAA
CGAAGACCTCCTCAGAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCAATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAA
ATGGGCTGGATACAGACACTTGACTTGGATGATTGTTTGAttctctgctgaaacaaagaactttagagacgaacaaaactagtttgtgttgtaacttgtt
gtacctttccccaatgtttgaagagaaatttttgatgatacaagaaaaaggttttgtttctctgtttggataatgttagttaatacggcccatttcgaga
actggtggtgggctatttcttagctagaagccatctaagtagatttcagctgtaattagggcttcacaatgaccctatataacggagcgtcaccaccttc
ttcttcctcctcctaacatctcatttagtccgcattttctttgtattgttcgatttctatagttatttttcacctgtgtacatggttttactgttttggg
ggagaaaggatttgtttttagattgcctcacatcacctttagcttgttttcgatataaaaccacggaaacaaagctagtcttcgaggcatatattgaact
gcggtgttaacgtggaggcatacttgttcatcatagtttagcctctaaaattatccgctaaaccacttcattttcatttattcgtttttgcctttgtttt
ttg

Border_1 (133038_LBD)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATTTGT
TCTCTACAAGGCTGATGAGAGAAGTGATGGGATCGCCTATAAAGTGGAAGACAAGAGCCAATGCAAACTTCGAAAGGTCTCCCACAAACGCAAGGATAGC
GAAAGCCGCTTTTCTCCAGTTGGATAGCTCAAACAAAACAGCTCTCCACGCATAAACGAGAAACCCCAGCGCTACAACAGAAGATCAAGATGTTACTTCA
TTTATCCAAAGCTTATTCGAACTATGCAACAAGGTATACAAAACTCGAATTCACTAGACTACTATTCAAATGCTAAACCAGAGTATAGTCCCTAAATTCC
AATCTCAGGGTCTTGAGTCAGAAATGCTTCAGCGATTGAGAACAAGAACAAAAATTTGATTTTGCTACAAGACTTATGATTCACGGTAACTAAAACGAAG
CCAAAAGTAAGCAGAAACGTACCAACAAACCATGGCCATATAATTGGACTATCTGGAGCTTCTTTGGTCAAATATCTGAATCTATCAGGCATCGTGCTCT
CTCGTCTCGCAAATCGCTCCGCGTCATCTTCAATCCCACCTTTGGGTGCATTTTCTTTCTCGCACCTCGTCAAAACCCTAAGTCTCACACTTGGAAACTT
CCCCGGAGCCACAAAACGACGGAGACTCGCGCCGGCATTTAAAAACTGTGGCGGAGAATTTGTA

Start of BLAST Alignment:	NT 780 / Exon 2 of 2
First 15 bp Perfect Match:	NT 780 / Exon 2 of 2

BLAST Details:
Query Sequence: 133038_LBD 
Length: (864 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g28210 68417.t03754 expressed protein                      3320  2.1e-145  1
At1g63010 68414.t06522 SPX (SYG1/Pho81/XPR1) domain-conta...   194  0.97      1


>At4g28210 68417.t03754 expressed protein
        Length = 1459

  Minus Strand HSPs:

 Score = 3320 (504.2 bits), Expect = 2.1e-145, P = 2.1e-145
 Identities = 664/664 (100%), Positives = 664/664 (100%), Strand = Minus / Plus

Query:   864 TACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCC 805
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   131 TACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCC 190

Query:   804 GGGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACC 745
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   191 GGGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACC 250

Query:   744 CAAAGGTGGGATTGAAGATGACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGA 685
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   251 CAAAGGTGGGATTGAAGATGACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGA 310

Query:   684 TAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGT 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   311 TAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGT 370

Query:   624 TGGTACGTTTCTGCTTACTTTTGGCTTCGTTTTAGTTACCGTGAATCATAAGTCTTGTAG 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   371 TGGTACGTTTCTGCTTACTTTTGGCTTCGTTTTAGTTACCGTGAATCATAAGTCTTGTAG 430

Query:   564 CAAAATCAAATTTTTGTTCTTGTTCTCAATCGCTGAAGCATTTCTGACTCAAGACCCTGA 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   431 CAAAATCAAATTTTTGTTCTTGTTCTCAATCGCTGAAGCATTTCTGACTCAAGACCCTGA 490

Query:   504 GATTGGAATTTAGGGACTATACTCTGGTTTAGCATTTGAATAGTAGTCTAGTGAATTCGA 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   491 GATTGGAATTTAGGGACTATACTCTGGTTTAGCATTTGAATAGTAGTCTAGTGAATTCGA 550

Query:   444 GTTTTGTATACCTTGTTGCATAGTTCGAATAAGCTTTGGATAAATGAAGTAACATCTTGA 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   551 GTTTTGTATACCTTGTTGCATAGTTCGAATAAGCTTTGGATAAATGAAGTAACATCTTGA 610

Query:   384 TCTTCTGTTGTAGCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTA 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   611 TCTTCTGTTGTAGCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTA 670

Query:   324 TCCAACTGGAGAAAAGCGGCTTTCGCTATCCTTGCGTTTGTGGGAGACCTTTCGAAGTTT 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   671 TCCAACTGGAGAAAAGCGGCTTTCGCTATCCTTGCGTTTGTGGGAGACCTTTCGAAGTTT 730

Query:   264 GCATTGGCTCTTGTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGCCTTGTA 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   731 GCATTGGCTCTTGTCTTCCACTTTATAGGCGATCCCATCACTTCTCTCATCAGCCTTGTA 790

Query:   204 GAGA 201
             ||||
Sbjct:   791 GAGA 794


>At1g63010 68414.t06522 SPX (SYG1/Pho81/XPR1) domain-containing protein
           contains Pfam profile PF03105: SPX domain
        Length = 4682

  Minus Strand HSPs:

 Score = 194 (35.2 bits), Expect = 3.5, P = 0.97
 Identities = 374/667 (56%), Positives = 374/667 (56%), Strand = Minus / Plus

Border_2 (133038_RBU)


ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAA:ATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCAT
GCTAGCATATGCCATGGAAACTATCAGTGTTTGCTATCAGTTTAGGGCGTTCTACTCCGGGATTGTGGCTTACACGCCTGTGAGAGAGTTAACCACGGTA
ATTCTTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGT:TGCACCAGAGTCAATCAGCAAGCAGCCGTATGTGGTAACTATTGCGGGTCTGG:TGGG
GTATGCAGCGGTGCAGAGTTATATCTCAGAGCCGTTCTTCTGGACTGTCTTGTTAGGTTTGCATGGGTACTCGCGGTTGATAAAGAAGAGAGACGATGTG
ACCTSGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGAGTAGGGGAGCCATGGTTGAGAGTGGTGGCTATGACAGGGCATNTGGCATCTAGCCATGTATCAC
AATTCAACGAAGACCTCCTCAGAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCAATGCCGTTGTTGGCTGNNGNATTAGCCATTGGCGNCCGACTTG
CTGCAGCAATGGGCTGCATACAGACACTTGACTGGGATGATTGGTTGATNCTCTGCTGAANCANAGAACTTTAGAGACGAACAAAACTAGTTTGTGTTGG
AACTTG

Start of BLAST Alignment:	NT 698 / Exon 2 of 2
First 15 bp Perfect Match:	NT 795 / Exon 2 of 2

BLAST Details:
Query Sequence: 133038_RBU 
Length: (803 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g28210 68417.t03754 expressed protein                      2659  1.5e-115  1


>At4g28210 68417.t03754 expressed protein
        Length = 1459

  Plus Strand HSPs:

 Score = 2659 (405.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 598/665 (89%), Positives = 599/665 (90%), Strand = Plus / Plus

Query:   146 GGAGCTCGCTTGA-GCTTGGATCAGATTGTCGTTTCCCGCCTTC-AGTTTATGC-ATGCT 202
             ||||  |  | || | ||| ||  | |  | || | || | ||  ||   || | || | 
Sbjct:   713 GGAGACCTTTCGAAGTTTGCATTGGCTCTT-GTCTTCCACTTTATAGGCGATCCCAT-C- 769

Query:   203 AGCATATGCCATGGAAACTATCAGTGTTTGCTAT---CAGT-TTAGGGCGTTCTACTCCG 258
             | | | |  |||  |  ||   || |  ||| ||   |||| ||||||||||||||||||
Sbjct:   770 A-CTTCTCTCATC-AGCCTTGTAGAGACTGCAATGTACAGTGTTAGGGCGTTCTACTCCG 827

Query:   259 GGATTGTGGCTTACACGCCTGTGAGAGAGTTAACCACGGTAATTCTTCTTGCATCCTCAG 318
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   828 GGATTGTGGCTTACACGCCTGTGAGAGAGTTAACCACGGTAATTCTTCTTGCATCCTCAG 887

Query:   319 TGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCAATCAGCAAGCAGCCGTATGTGGTAA 378
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   888 TGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCAATCAGCAAGCAGCCGTATGTGGTAA 947

Query:   379 CTATTGCGGGTCTGGTGGGGTATGCAGCGGTGCAGAGTTATATCTCAGAGCCGTTCTTCT 438
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   948 CTATTGCGGGTCTGGTGGGGTATGCAGCGGTGCAGAGTTATATCTCAGAGCCGTTCTTCT 1007

Query:   439 GGACTGTCTTGTTAGGTTTGCATGGGTACTCGCGGTTGATAAAGAAGAGAGACGATGTGA 498
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct:  1008 GGACTGTCTTGTTAGGTTTGTATGGGTACTCGCGGTTGATAAAGAAGAGAGACGATGTGA 1067

Query:   499 CCTSGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGAGTAGGGGAGCCATGGTTGAGAGTGG 558
             |||+|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct:  1068 CCTCGGCTCTTCCTTCTGCAGCTGTTCTGGCAGGAGTAGGGGAGCCATGGGTGAGAGTGG 1127

Query:   559 TGGCTATGACAGGGCATNTGGCATCTAGCCATGTATCACAATTCAACGAAGACCTCCTCA 618
             ||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct:  1128 TGGCTATCACAGGGTATCTGGC-TCTAGCCATGTATCACAATTCAACGAAGACCTCCTCA 1186

Query:   619 GAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCAATGCCGTTGTTGGCTGNNGNATTA 678
             ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||
Sbjct:  1187 GAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCAATGCCGTTGTTGGCTGCAGCATTA 1246

Query:   679 GCCATTGGCGNCCGACTTGCTGCAGCAATGGGCTGCATACAGACACTTGACTGGGATGAT 738
             |||||||||| |||||||||||||  ||||||||| |||||||||||||||| |||||||
Sbjct:  1247 GCCATTGGCGTCCGACTTGCTGCAA-AATGGGCTGGATACAGACACTTGACTTGGATGAT 1305

Query:   739 TGGTTGATNCTCTGCTGAANCANAGAACTTTAGAGACGAACAAAACTAGTTTGTGTTGGA 798
             || ||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct:  1306 TGTTTGATTCTCTGCTGAAACAAAGAACTTTAGAGACGAACAAAACTAGTTTGTGTTGTA 1365

Query:   799 ACTTG 803
             |||||
Sbjct:  1366 ACTTG 1370