At3g04870 SYNGENTA 13528
Genomic Sequence (from TAIR)
actaaaagtttagtaaaaaatcgtttcaatctttttcttatctaagtaccatctaaaatgggtttaggctcaattcttcacctaatttcatttcgaatag gttttgatcatataaaaaagaaaaaaaattggttaagcgcactgaagacagttgttagcaccacagagttttatgaggagagaaagcatcatacatcatc acaaacaagtttcttcatcgctcattgttagtcattagtactttacttcttccttcttcctcttttattataagaagagaaagaaaaaaacatcatcttt tttttcttgaataacagagcgattgctcttatctcagttgattggccATGGCTTCTTCAGTCGTCTTCGCGGCAACTGGGTCTCTCTCCGTTCCTCCATT GAAGTCTCGGAGATTCTATGTTAATTCTTCACTCGACTCCGATGTTTCCGACATGAGTGTTAACGgtaattaaccaaacaaaaattgaattctttactgt ctcctctgcgtcaggttgattcctttggatgtttcggattctgggtatttcaattggattctttagaaaatcggtaaattttgtctttttagtggaaaat ttgagaaattgacatgtactaggattaaaaggcttagctttatgccacgaacaatcccacttttgaagaggatgatgtttcaattctcatggcatattga tgaactcaatctatttatttcctggcatatagatgaattctgaactctcatggtttagataaaaagatgaaactcttgtggcttctctctactaatggca tagtaatggaaatggagagtttggtcgagattttacggtcgatccaagattctcttttgtttatataatcagtttagtttatccatgggaagtagtagct gttaaggaatcaaatttagatttaaggtttcatgttatgagaagctttcttcttctaataattttctggagcatcgtgattcttgatcatctcttactgt ttaaatggtctggttatgaatacagCTCCAAAGGGGTTATTTCCTCCAGAGCCTGTACCATACAAGGGACCTAAGCTGAAAGTAGCCATTATAGGAGCTG GACTTGCAGGCATGTCGACTGCTGTAGAGCTTCTGGATCAGGGTCACGAGgtgtttactcctcttctgttagttgtttatatatttgatttggttacata catgtgtaatcatcgtgattgtttcagGTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATA TTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGgtttttgtttctcaaagcttctgctcaaatttacttga tgattgaaactcatactcatgtatggttttttttgtggtgatgtagGTGGGTGCTGAGAAAAACCTTCT◄AGTCAAAGACCATACTCATACATTTATAAA CAAAGACGGCA►CAATTGGAGgtatggctcagttcattattctcttgctattgtgattttatcgtactgagatgtgcatattatttgtagAGCTTGATTT TCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGgtataaatcaaacttttaaattgatttatcttttaa atctttggattcatatcaatgcacttttccgccgtggaaaatcggcaacagttttctcaaatgttcatagcaaaagattagtaatttcttgctttatgta ccaatatcgagcttgctaactgcttattcttgttttgaccgaacagCCCTATGACAAACTAAGGAATTCACTGGCTCTTGCATTAAGCCCTGTTGTTAAA GCTCTTGTCGACCCCGATGGAGCAATGAGAGACATTCGCAACCTTGACAGCgtaaagaatgataacctgttcttcttctcatctgtactactatttgtgt tctctaaattttctgaaatactttttgcagATAAGTTTCTCGGATTGGTTCCTGTCAAAAGGTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTG TTGCTTATGCTCTAGGTTTCATAGACTGCGATAACATGAGTGCGCGATGCATGCTTACAATATTCTCATTATTCGCTACCAAAACAGAAGCTTCTCTGTT GCGTATGCTCAAGGGCTCTCCTGATGTTTACTTGAGTGGTCCTATCAAACAATATATCACAGATAGAGGTGGCAGgtgtgtatctgctataactacaaga actgattctcgcatttattatgtcattggcttatcgggtatttataatattgtcttcaaacagAATCCATCTAAGGTGGGGTTGCAGGGAGATACTTTAT GATAAATCAGCAGATGGAGAAACTTATGTCACTGGACTAGCAATTTCTAAGgtgaaatttagcttcagacgtaggattttagtggactgcgaaaatgtat acatacattctgaaggttgcagcttctgggtagagaaaaagcacaaaactttgatatgaaagtaaaggactttttttgttttttggtttgctttcagGCT ACGAACAAGAAGATTGTGAAAGCTGATGTATATGTTGCAGCATGTGATGTGCCGGGAATCAAAAGGTTACTTCCAAAAGAATGGAGGGAATCTCGGTTTT TCAACGATATATATGAACTCGAGGGAGTACCTGTGGTTACAGTACAGCTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAGgtt ggtaatctagaatcctatgttttgggatgatcgtgatggatctattctgttttggttttaagtctttgtttttgtgttttggaaaatcgtagGCAGTTGA AACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGATGCTGATTTCTCGTGCTTTGCGGATCTTGCACTAGCTTCGCCTGCAGATTATTACATCGA AGGACAAGGCACTTTACTTCAgtaagaaagaataacgtttttctttgtttacaaaatcgcatgcaggtctctcagtgtcttgaaactgaattctgttttc acagGTGCGTTCTAACACCAGGAGATCCGTATATGCGAATGCCAAATGATAAGATCATAGAGAAAGTAGCGATGCAGgtaaagaacatggctaaattcaa ctcttgagaaaacttttgtctagctggtttgttgttgattctcaaatcttgttcagGTCACTGAGTTGTTTCCATCGTCACGAGGCCTAGAAGTCACTTG GTCGTCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAGCACCCGGAAAAGATCCATTCAGACCCGATCAGAAGACGCCCATAAAGAATTTCTTCCTC GCCGGTTCATACACAAAGCAGgtaacatttttcacttactatctttcagccagatccccgatagctacaaatgcaagcaagaacagcctccaaattgtgt ctgagaaatccgaaagatcagtgagaattttgtttctggacttgttacagGATTACATAGATAGTATGGAAGGAGCAACATTATCAGGGAGACAAGCTTC GTCATACATCTGTGATGCTGGTGAAGAACTAGCAGAGCTAAACAAGAAGCTTTCTTCTTCTGCAACTGCAGTTCCTGATGAGCTAAGTCTGGTCTAAtga tgaaaaatgtttgaaagtagttaccaatggctaattgatgaagatttgagacactatgggtacatgaagaagaagcatatgtagaaaccctttatatagt gttcataagagaaagtatttgtaatattacaccatcttttgaaatcaaagattcttacaaagtacatcaatttaagaaagtttactctcagaacttacaa cattcaaaagaagagagtactacacaaagtttacaccttcaagcttcttcttcgatggctttctttgcagtttcgaggtcttcgtcaaggaatatgtccc aatggccatcccaagtgatgaagaactcagtgtcttcgtgatatttgactcggtgaacatcaccggcgggagtgaataggtaatcgccgtcaacgagatc agctctctccttcttgctcagattccacacacttttctttccctttatgactacaaggtcatggccgaatgtgtggtgatgcgccggttccacacttccc gctttgaatcttacaatcgccgacgtcggcgtctctctaacgatcttcatcgagcctcccggcatgatgtccactggagtgaactctctgttcttcgcca agcagcaaattacgcaagacgcggttgtttcatcgatcttcttggttgttgaatcgccggcggttgactttccaatctgagacatctcggagagagaatt gtcgaggaaggaagagataactgagctccatggttcggatccggacgcaggacaaggagatttgaaaggagttttgatccaagcgtcgaagatttccaag gcggtttccggggatgttttgatgccggagaatgcgaggacattgcaattgcttattgatcgagcgttgacggcgtcttcgacggagagacaagtggctg cgtagacgcccgggaacttgttggcgaacatcgcaactccgacgccggtgccgcagcagactaagccgcgaacttcggaagacgatgaagcggagacgcg gcgaccgacttcagatccagcagagtagtaagaggacactccggtatcctccacgtctatgccgagagagcggaggtgtgttaccatcgcgtccttgagg ctcgctccaaagtcatcagctccggtgatgattttcaacggttgatcgacggcagaaacagctccggccatcttttcagagctttgaaaccttaagctgt gaccagaagaatcttaaattggaaattttcggaaaaaagagaaagacataagttacactactcttccacatttcaccctattaagttattttaacacaaa aggaccctccaattttaaatgaaataaggtactataaattaataaataaaagttttagggtggaaacaaaattataagggaacaacatgccgacaaaaaa aaaaaaaaaagggaacaacataaacatttttaatataaacatgcggcggagtcgtggcggcctttaaaataaaattgccgccgacgactattgtaagtca ctcggctaagtaagaATGGCGGGAGTGGCTTGCCAGATATCTATCAGCTCATCTTCGACCTTTAGGgtgagtctctatggcgattagcttttccttcgct ga
Border_1 (13528_AbB_U)
AGAAGGTTTTTCTCAGCACCCACCTACATCACCACAAAAAAAACCATACATGAGTATGAGTTTCAATCATCAAGTAAATTTGAGCAGAAGCTTTGAGAAA
CAAAAACCCTTTTTCATCAAACGGAAGAGATTGTTGTAGCATCCGAAGAAAACATGTAATCCCATTTCAATATGGTTCCCACGTCTATCTACAAAAGAAC
CCACTTTGCCACCAATGAATGTCCTCGAATCATATATATCCACCTGAAACAATCACGATGATTACACATGTATGTAACCAAATCAAATATATAAACAACT
AACAGAAGAGGAGTAAACACCTCGTGACCCTGATCCAGAAGCTCTACAGCAGTCGACATGCCTGCAAGTCCAGCTCCTATAATGGCTACTTTCAGCTTAG
GTCCCTTGTATGGTACAGGCTCTGGAGGAAATAACCCCTTTGGAGCTGTATTCATAACCAGACCATTTAAACAGTAAGAGATGATCAAGAATCACGATGC
TCCAGAAAATTATTAGAAGAAGAAAGCTTCTCATAACATGAAACCTTAAATCTAAATTT:ATTCCTTAA
| Start of BLAST Alignment: | NT 1122 / Exon 4 of 13 (Intron in 5’ UTR) |
| First 15 bp Perfect Match: | NT 1122 / Exon 4 of 13 (Intron in 5’ UTR) |
BLAST Details: Query Sequence: 13528_AbB_U Length: (568 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g04870 68416.t00478 zeta-carotene desaturase (ZDS1) / ... 2759 1.4e-120 1 At5g26660 68418.t02884 myb family transcription factor (M... 193 0.75 1 At3g44010 68416.t04371 40S ribosomal protein S29 (RPS29B)... 178 0.9992 1 At2g19110 68415.t02116 ATPase E1-E2 type family protein /... 179 0.9997 1 >At3g04870 68416.t00478 zeta-carotene desaturase (ZDS1) / carotene 7,8-desaturase identical to SP|Q38893 Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis thaliana} Length = 4817 Minus Strand HSPs: Score = 2759 (420.0 bits), Expect = 1.4e-120, P = 1.4e-120 Identities = 559/569 (98%), Positives = 559/569 (98%), Strand = Minus / Plus Query: 568 TTAAGGAAT-AAATTTAGATTTAAGGTTTCATGTTATGAGAAGCTTTCTTCTTCTAATAA 510 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 789 TTAAGGAATCAAATTTAGATTTAAGGTTTCATGTTATGAGAAGCTTTCTTCTTCTAATAA 848 Query: 509 TTTTCTGGAGCATCGTGATTCTTGATCATCTCTTACTGTTTAAATGGTCTGGTTATGAAT 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 849 TTTTCTGGAGCATCGTGATTCTTGATCATCTCTTACTGTTTAAATGGTCTGGTTATGAAT 908 Query: 449 ACAGCTCCAAAGGGGTTATTTCCTCCAGAGCCTGTACCATACAAGGGACCTAAGCTGAAA 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 909 ACAGCTCCAAAGGGGTTATTTCCTCCAGAGCCTGTACCATACAAGGGACCTAAGCTGAAA 968 Query: 389 GTAGCCATTATAGGAGCTGGACTTGCAGGCATGTCGACTGCTGTAGAGCTTCTGGATCAG 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 969 GTAGCCATTATAGGAGCTGGACTTGCAGGCATGTCGACTGCTGTAGAGCTTCTGGATCAG 1028 Query: 329 GGTCACGAGGTGTTTACTCCTCTTCTGTTAGTTGTTTATATATTTGATTTGGTTACATAC 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1029 GGTCACGAGGTGTTTACTCCTCTTCTGTTAGTTGTTTATATATTTGATTTGGTTACATAC 1088 Query: 269 ATGTGTAATCATCGTGATTGTTTCAGGTGGATATATATGATTCGAGGACATTCATTGGTG 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1089 ATGTGTAATCATCGTGATTGTTTCAGGTGGATATATATGATTCGAGGACATTCATTGGTG 1148 Query: 209 GCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTT 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1149 GCAAAGTGGGTTCTTTTGTAGATAGACGTGGGAACCATATTGAAATGGGATTACATGTTT 1208 Query: 149 TCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGGGTTTTTGTTTCTCAAAGC 90 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1209 TCTTCGGATGCTACAACAATCTCTTCCGTTTGATGAAAAAGG-TTTTTGTTTCTCAAAGC 1267 Query: 89 TTCTGCTCAAATTTACTTGATGATTGAAACTCATACTCATGTATGGNNNNNNNNGTGGTG 30 |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1268 TTCTGCTCAAATTTACTTGATGATTGAAACTCATACTCATGTATGGTTTTTTTTGTGGTG 1327 Query: 29 ATGTAGGTGGGTGCTGAGAAAAACCTTCT 1 ||||||||||||||||||||||||||||| Sbjct: 1328 ATGTAGGTGGGTGCTGAGAAAAACCTTCT 1356 >At5g26660 68418.t02884 myb family transcription factor (MYB4) (MYB86) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB86) mRNA, partial cds GI:3941517 Length = 1598 Minus Strand HSPs: Score = 193 (35.0 bits), Expect = 1.4, P = 0.75 Identities = 145/236 (61%), Positives = 145/236 (61%), Strand = Minus / Plus
Border_2 (13528_LB1D)
TATGTATGTCAATTGGAGGTATGGCTCAGTTCATTATTCTCTTGCTATTGTGATTTTATCGTACTGAGATGTGCATATTATTTGTAGAGCTTGATTTTCG
GTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGGTATAAATCAAACTTTTAAATTGATTTATCTTTTAAATC
TTTGGATTCATATCAATGCACTTTTCCGCCGTGGAAAATCGGCAACAGTTTTCTCAAATGTTCATAGCAAAAGATTAGTAATTTCTTGCTTTATGTACCA
ATATCGAGCTTGCTAACTGCTTATTCTTGTTTTGACCGAACAGCCCTATGACAAACTAAGGAATTCACTGGCTCTTGCATTAAGCCCTGTTGTTAAAGCT
CTTGTCGACCCCGATGGAGCAATGAGAGACATTCGCAACCTTGACAGCGTAAAGAATGATAACCTGGTCTTCTTCTC
| Start of BLAST Alignment: | NT 1164 / Exon 4 of 13 (Intron in 5’ UTR) |
| First 15 bp Perfect Match: | NT 1164 / Exon 4 of 13 (Intron in 5’ UTR) |
BLAST Details: Query Sequence: 13528_LB1D Length: (477 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g04870 68416.t00478 zeta-carotene desaturase (ZDS1) / ... 2331 3.4e-100 1 At4g29100 68417.t03866 ethylene-responsive family protein... 179 0.994 1 >At3g04870 68416.t00478 zeta-carotene desaturase (ZDS1) / carotene 7,8-desaturase identical to SP|Q38893 Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) {Arabidopsis thaliana} Length = 4817 Plus Strand HSPs: Score = 2331 (355.8 bits), Expect = 3.4e-100, P = 3.4e-100 Identities = 467/468 (99%), Positives = 467/468 (99%), Strand = Plus / Plus Query: 10 CAATTGGAGGTATGGCTCAGTTCATTATTCTCTTGCTATTGTGATTTTATCGTACTGAGA 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1398 CAATTGGAGGTATGGCTCAGTTCATTATTCTCTTGCTATTGTGATTTTATCGTACTGAGA 1457 Query: 70 TGTGCATATTATTTGTAGAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTA 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 TGTGCATATTATTTGTAGAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTA 1517 Query: 130 TTCGCGCATTTTTGGTCACAAATCAACTCAAGGTATAAATCAAACTTTTAAATTGATTTA 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1518 TTCGCGCATTTTTGGTCACAAATCAACTCAAGGTATAAATCAAACTTTTAAATTGATTTA 1577 Query: 190 TCTTTTAAATCTTTGGATTCATATCAATGCACTTTTCCGCCGTGGAAAATCGGCAACAGT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1578 TCTTTTAAATCTTTGGATTCATATCAATGCACTTTTCCGCCGTGGAAAATCGGCAACAGT 1637 Query: 250 TTTCTCAAATGTTCATAGCAAAAGATTAGTAATTTCTTGCTTTATGTACCAATATCGAGC 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1638 TTTCTCAAATGTTCATAGCAAAAGATTAGTAATTTCTTGCTTTATGTACCAATATCGAGC 1697 Query: 310 TTGCTAACTGCTTATTCTTGTTTTGACCGAACAGCCCTATGACAAACTAAGGAATTCACT 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1698 TTGCTAACTGCTTATTCTTGTTTTGACCGAACAGCCCTATGACAAACTAAGGAATTCACT 1757 Query: 370 GGCTCTTGCATTAAGCCCTGTTGTTAAAGCTCTTGTCGACCCCGATGGAGCAATGAGAGA 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1758 GGCTCTTGCATTAAGCCCTGTTGTTAAAGCTCTTGTCGACCCCGATGGAGCAATGAGAGA 1817 Query: 430 CATTCGCAACCTTGACAGCGTAAAGAATGATAACCTGGTCTTCTTCTC 477 ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1818 CATTCGCAACCTTGACAGCGTAAAGAATGATAACCTGTTCTTCTTCTC 1865 >At4g29100 68417.t03866 ethylene-responsive family protein contains similarity to ethylene-inducible ER33 protein [Lycopersicon esculentum] gi|5669656|gb|AAD46413 Length = 3604 Minus Strand HSPs: Score = 179 (32.9 bits), Expect = 5.1, P = 0.994 Identities = 137/235 (58%), Positives = 137/235 (58%), Strand = Minus / Plus