At5g22640 SYNGENTA 13782
Genomic Sequence (from TAIR)
aaatattatttataaaaaataataattggttggtgatcaattggatccagtataaagctgaagcctgaaagtagacttttgtaacgcaattactaaatat caaacattgtatgcattggtttcttgaaacggcccatgttcttcaaagtatttgatgttcggcccatataagatttgaaaggtatgggccaatgataatt cagataatctacaagacgcatttttaagccttcttaaacttacggggcaaaaataagaaaaaccaaaacaacaggggcgaaatacaaattatctgcaaat gtttttgtttcttctcagtgtctctagtttacacaaaaaccccaaaacctctctcacaacgcttatctgctcaacaacactcttcacctatccacttctc atctcttcgttatcccctctctctaATGGCTAACGAAGAACTCACTGAGTCACAGCAACAAGAAGACCCAAGTCAACAATTACCCAATGCAGATGAAGAA AAGGGCTCAGACTCCGACTCAAACTCAGACTCAGACGCATCATCCCAATCCTCCGGCGACGATTTCTACATCTCCGAGTCAGAAAATGAAGCAGAAGGAG ACAACACAATCTTCAACTACGTAAGACCAAGTGACATACCTCCTGACCCAAACGCAAACCCAGAAACCAACATTCGCCGATTCAATCGAGTCCTCGATGG CAAACGAGTGAAGCGTATGCAAGAAGAAGAAGAAGATAAATACACTTTCTATGAAGATCTTTTCGATTTCCCTAGAGACCCAGAACGTTGGAAGGAGCAA GATTTAAGAGAGATTTGGGCTGATGGTCCATTGGAGATGACGAAACCTGGTTGGGATCCTGCTTGGGCTGATGAAGATGATTGGGATGTTGTTAACGATG AGATTCAAGAAGGTCGAGATCCTGGGATTCAACCTTTTTATGTTCCGTATAGGAAACCTTATCCAGCTATTCCAGATAATCATTATGATATTGAGAATGC TAAAGGTGTTGTTGAAGAGCTTGATAGGATTGAAGAGTTTCTTCAGTGGGTCAGCTATATTTTTCCTGATGGAAGCTCgtaatgcctcacatttcccttt tttcttctctttggttttggtgtcttgtttctgtgagtttggtgtttgcaagttgtgatttttaggttttgggtttacaggctttggtgttttgttaccg tgagatgctttctaaatctagtgattttcttagtttgttgtgttctataagctgcagattgaattttccatgaagtttgggttgaaactttgtattctaa atagagtttgaattatggaaatgaaggaaatggcaatgcaggttggatgatagggcattagaaactttcttgtgactaagttttatgatcttcgtcatct gtttgggttgcttagtgatgaatactttcgtctagattcagtagcttcgtatctcactattttctctctcttttgttttgggctaaagGTACGAAGGCAC AGTTTGGGATGACTTGGCTCAAGGCAAAGGTGTTTATATTGCTGAAAATGGGCTTGTGAGgtgatatttctgttttggagatttgcttgttttttgtttc tcttggtaatgtcttacaattggttttcaatcacccaataatttttttggtgttggctctgaatttgaattgttagGTATGAGGGTGAATGGCTTCAGAA TGACATGGAAGGTCATGGGGTTATCGACGTTGATATTCCTGACATTGAGCCCATACCAGGTTCCAAgtatgattctcattcctattaatcttcccacggg attttatgaacatagtcgtttgactaggatattgttctttctgtctatgtagGCTTGAAGCTAAGATGCGTGCGGAAGGAAGGATTATCAAGAGAGATTA CATGACTCCAGAAGACAGAAAGTGGTTGGAAATGGATGTCGAGGATAGTGTTGCACTTACTGATGGGAATTTTCAAGTTCCTTTCTATGAAAACGAAGAA TGGGTCACACAGTTTGGCGAGAAACCgtgagtctgcgatgataagattcttactagatggcttacttcccaacactaatttgaacggttttatttaatat tttgatttactgacctcatgaaatatattgctggactaggcaataacttgatctaaaaatacaaacagaaaaatgtctttttagttgatttcctctctat tccttattcatacatatacattgtatattatatggttttcatatcagGGAGAAAGGTCGGTATCGCTATGCTGGTCAATGGAAGCACAGTCGAATGCATG GGTGTGGTGTCTATGAAGTTAACGAACGCATCCTATATgtgagtagtaagaaatattggtcgtttacatcataattctatctaatctgatcatcataaaa tagcttagatagatggcatctttgtacttcatgaaagatttacattagtgaatattcatgtttctgacactagttcacatcttaatggtaacgcagGGTA GATTCTACTTTGGGGAGCTATTGGAGGAGGAGCATGGCTGTACCGTAGATATTTGTGCGgtagttacccatttttgctctctatgatacatataactttc agcaaagaaagaggaagtcgtgataaatatactgatgtgaaaacatttttcagCTGCATTCTGGTTTGGCGGAGGTGGCTGCAGCTAAGGCTCGAATGTT TGTAAACAAACCCGACGGAAgtattgccccttttctttaccacttcttctgtttggttctgtgtattaagtataaaccaagacatattttagggatttgt ttgattcctttagatcagtgcaggaccctctctagtaaccatcattctgtttcaaatatatatttcgcttttctttcaggcaatgtccagcttatgaaag tgaggaagaaaactggtcactttacagtaaggtgttagtttagttgagagctcaaagtgtttttgttttgtttgttttatgtctatgcagTGATTAGGGA AGAGAGGGGACCATATGGTGATCCTCAACATCCGTATTTTTATGAAGAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATGAAgtgggt cattttcttatcaagcttttcgagttagttttctgatcacaaagttgacaaaacaatctgtctttttggtagGTACCTGAGTATTGGGAAACCTACGTAG GCGAGGTGGATCAAGAGAGGGAAATGTGGTTGAACTCTTTTTACAAAGCTCCTTTGAGGTTACCAATGCCTGCTGAGCTCGAACATTGGTGGGAAAATGg taatgacccttcaagattttagtcttacatggttgaatgcattgatgttctactgatttttttctatattttattttcttgatcagTGGAGGTGACACCG GAGTTTGTTTTACTGAACAAAGAACCTGAACCTGATCCAAATGATCCTTCAAAACTTGTCCAGAAGGAGGACCCTGTTATTTTACATACACCAACAGGTC GAATAATCAACTATGTAGAGGATGAAAAGCATGGCATTCGACTATTTTGGCAGCCTCCTCTGGAGGAAGGAGAAGAAGTGGATCCTTCAAAAGTTGAGTT TCTGCCACTTGGGTTCGACGAGTTCTATGGGAAAGAAGTGGTAGTGAAAAAGGAACACCCAATAAAAAGCTTTGTACTTGGAATCGAGAAATCGGTGAAG CCGATGCTTGACGGATTAGAGAAATGGACAGAAGAGAAAAAGAAAGCATATGAGGAGAGAAAGGAGATGATACAGCAAGAACTTGAGTTAGTAGAGGCTG AGATTTGCTTAGAGGAAGCTATAGAAGATATGGATGAAGAATTGAAGAAGAAAGAACAAGAAGAGGAAAAGAAAACTGAAATGGGTTTAACTGAAGAGGA TGAAGATGTTTTGGTCCCGGTTTATAAAGAAGAGAAAGTTGTCACTGCCAAAGAGAAGATACAAGAGAATAAACAAGAAGAGAAATACAAAGATGATGAT GATGAGGATGATGACGATGGTGATGATGATGACGATGATGATGATGATGATGATCTTGGGCCATCAAGTTTTGGATCTGCAGACAAGGGAAGGAGGAATT CTCCTTTTTCTTCATCCTCATTGTCTTTTGCTTCGTGTACCCTCTTTCCTGCGgtaatactctctcttatttttcagtataatctcggtttgtctcgatt agaagaagttagtgttgatatatgtaaacttggcagGTACAATCAAGACTAGAAAGCTCATTTCTAGCATGGAAGCAACATCGAG►CAGAACCATCAAAA GTGAACACAGGAATCAT◄CAAAGGTGCTGATA►CCGCATCAGCTTCAATCCATTTTCCTCCATTGTCGAGTAACAATGCTAGATTGAAGATGGGAAAGGT AGCAAACCGAGGTTGTGTCCAGAGAAGCTATGGAAGCTCAAGATCTCAGTCTCAGTTAATGTCTCTATCACGACTACTTTCTTGCAACGCATCATCATCT TCTTCTCCTCCCGATAGCAGCTCCAGTGAATACCTCAAAGACTCCGGCCTCTGGGAAACACCGGTTGGGGACATGAGCGTGGTTTTGTCGCTGCAAATTC AGACAAAATGTTCTGATTTGTTTGCTGAGACTCCTGCTGTGTCTTGAgtctctcttcttctgtagcatttagctcgagttcttatgcacttcaaggcttc tttttttggtggacaagatcatttgaatttttgttgtattatctaataaatattttaccgaaactatttaaacgaaaaaactgaagatttatttctgttt tatttttcataatcatatgatttagagaatgagaatcgaataatctcagaatatttaagttaatatttcatttatcaatttagaatctttaccaaatatg caaataattttacattaacgcaaatattccaaaataaaggaagcgttacgaaattaagggcaaaacgacgccgtgtagactctcgaagaaccctaaagag acttcttaaacctcattcgattataaaatagccccaaacccactgcctctttcactgcaatttctctctttcgcttctaaaaaaaaacctaacaacctct ctt
Border_1 (13782_LB1D)
YTYGATTCCATTCCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACA
CCACAATGATTCCTGTGTTCACTTTTGATGGTTCTGCTCGATGTTGCTTCCATGCTAGAAATGAGCTTTCTAGTCTTGATTGTACCTGCCAAGTTTACAT
ATATCAACACCAAAC
| Start of BLAST Alignment: | NT 3891 / Exon 11 of 11 |
| First 15 bp Perfect Match: | NT 3891 / Exon 11 of 11 |
BLAST Details: Query Sequence: 13782_LB1D Length: (215 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g22640 68418.t02400 MORN (Membrane Occupation and Reco... 531 3.4e-18 1 At1g09460 68414.t00940 glucan endo-1,3-beta-glucosidase-r... 148 0.50 1 At3g07700 68416.t00835 ABC1 family protein contains Pfam ... 144 0.70 1 At4g16810 68417.t02392 expressed protein similar to verna... 141 0.81 1 >At5g22640 68418.t02400 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat Length = 4417 Minus Strand HSPs: Score = 531 (85.7 bits), Expect = 3.4e-18, P = 3.4e-18 Identities = 107/108 (99%), Positives = 107/108 (99%), Strand = Minus / Plus Query: 213 TTGGTGTTGATATATGTAAACTTGGCAGGTACAATCAAGACTAGAAAGCTCATTTCTAGC 154 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3839 TTAGTGTTGATATATGTAAACTTGGCAGGTACAATCAAGACTAGAAAGCTCATTTCTAGC 3898 Query: 153 ATGGAAGCAACATCGAGCAGAACCATCAAAAGTGAACACAGGAATCAT 106 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3899 ATGGAAGCAACATCGAGCAGAACCATCAAAAGTGAACACAGGAATCAT 3946 >At1g09460 68414.t00940 glucan endo-1,3-beta-glucosidase-related similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from [Triticum aestivum] Length = 1371 Plus Strand HSPs: Score = 148 (28.3 bits), Expect = 0.69, P = 0.50 Identities = 128/221 (57%), Positives = 128/221 (57%), Strand = Plus / Plus
Border_2 (13782_LB2U)
CCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCCGCATCAGCTTCAATCCATTTTCCTCCATTGT
CGAGKAACAMTGCTAGATTGAAGATGGGAAAGGTAGCAAACCGAGGTTGTGTCCAGAGAAGCTATGGAAGCTCAAGATCTCAGTCTCAGTTAATGTCTCT
ATCACGACTACTTTCTTGCAACGCATCATCATCTTCTTCTCCTCCCGATAGCAGCTCCAGTGAATACCTCAAAGACTCCGGCCTCTGGGAAACACCGGTT
GGGGACATGAGCGTGGTTTTGTCGCTGCAAATTCAGACAAAATGTTCTGATTTGTTTGCTGAGACTCCTGCTGTGTCTTGAGTCTCTCTTCTTCTGTAGC
ATTTAGCTCGAGTTCTTATGCACAGCACTANCA
| Start of BLAST Alignment: | NT 3860 / Exon 11 of 11 |
| First 15 bp Perfect Match: | NT 3905 / Exon 11 of 11 |
BLAST Details: Query Sequence: 13782_LB2U Length: (433 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g22640 68418.t02400 MORN (Membrane Occupation and Reco... 1776 7.6e-75 1 At1g18340 68414.t02045 basal transcription factor complex... 180 0.96 1 At5g13330 68418.t01395 AP2 domain-containing transcriptio... 171 0.9999 1 >At5g22640 68418.t02400 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat Length = 4417 Plus Strand HSPs: Score = 1776 (272.5 bits), Expect = 7.6e-75, P = 7.6e-75 Identities = 382/406 (94%), Positives = 384/406 (94%), Strand = Plus / Plus Query: 29 CAGTACATTAAAAACGTCCGCA-ATGTGTTATTAA--GT--TG-T-CCGCATCAGCTTCA 81 ||| || | |||| || || | | | || || || || | |||||||||||||| Sbjct: 3916 CAGAACCATCAAAA-GTGAACACAGGAATCATCAAAGGTGCTGATACCGCATCAGCTTCA 3974 Query: 82 ATCCATTTTCCTCCATTGTCGAGKAACAMTGCTAGATTGAAGATGGGAAAGGTAGCAAAC 141 |||||||||||||||||||||||+||||+||||||||||||||||||||||||||||||| Sbjct: 3975 ATCCATTTTCCTCCATTGTCGAGTAACAATGCTAGATTGAAGATGGGAAAGGTAGCAAAC 4034 Query: 142 CGAGGTTGTGTCCAGAGAAGCTATGGAAGCTCAAGATCTCAGTCTCAGTTAATGTCTCTA 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4035 CGAGGTTGTGTCCAGAGAAGCTATGGAAGCTCAAGATCTCAGTCTCAGTTAATGTCTCTA 4094 Query: 202 TCACGACTACTTTCTTGCAACGCATCATCATCTTCTTCTCCTCCCGATAGCAGCTCCAGT 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4095 TCACGACTACTTTCTTGCAACGCATCATCATCTTCTTCTCCTCCCGATAGCAGCTCCAGT 4154 Query: 262 GAATACCTCAAAGACTCCGGCCTCTGGGAAACACCGGTTGGGGACATGAGCGTGGTTTTG 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4155 GAATACCTCAAAGACTCCGGCCTCTGGGAAACACCGGTTGGGGACATGAGCGTGGTTTTG 4214 Query: 322 TCGCTGCAAATTCAGACAAAATGTTCTGATTTGTTTGCTGAGACTCCTGCTGTGTCTTGA 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4215 TCGCTGCAAATTCAGACAAAATGTTCTGATTTGTTTGCTGAGACTCCTGCTGTGTCTTGA 4274 Query: 382 GTCTCTCTTCTTCTGTAGCATTTAGCTCGAGTTCTTATGCACAGCA 427 |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 4275 GTCTCTCTTCTTCTGTAGCATTTAGCTCGAGTTCTTATGCACTTCA 4320 >At1g18340 68414.t02045 basal transcription factor complex subunit-related similar to TFIIH basal transcription factor complex p34 subunit (Basic transcription factor 2 34 kDa subunit) (BTF2-p34) (General transcription factor IIH polypeptide 3) (SP:Q8VD76) {Mus musculus}; contains Pfam PF03850: Transcription factor Tfb4 Length = 2449 Plus Strand HSPs: Score = 180 (33.1 bits), Expect = 3.2, P = 0.96 Identities = 106/174 (60%), Positives = 106/174 (60%), Strand = Plus / Plus