At3g01610 SYNGENTA 14610.1
Genomic Sequence (from TAIR)
ctctttaacattactagacagttcacacaccctctgtctagacggaattagggttttcttaagctattccgcagcagtctacggttgttgtgtcggtggt gggcgcctccaaaatttaccctttagtataaataagttttggaaaattcagactttggttattgaaacgccatctcagctctaattcagtacgATGGGGA GGAGAGGTCGCGGCGGCGGCGGTGGTATGGGCGGAGGAATCAATCGTAGATATCTGAGTCAAGTTATGGATACGTGCGGCAAGGATTTATCTACGGCGGA GGACATCGTTGATGATCTTCGTTCCAGGTACGGCAATTTTGCGAGGTTGACTCGGCAAGTGCTTCTACTCAATGTCAGGCAAGTCCTTAATGTTAGAAAC AACAAGAGGGTTAAAGACGAAGATGAAGATGACAACATTGGAGATGAGGAAGGTTCTGCTTCTCAGAGGAAGAAACAGAGACGGGTTGATGAGAAAGAGG AGAAATTGCAGCGAGCGGAGCAGTCGCATTTAAGGAAGAGGAATATGGAACGTTCAGTGTCTTCTTCTCCGTCTTCTTCTTCTTCTTCGGAAGACAGTGG TGATGTGTCGACTTCTGAGGACGCGGTTTATGGCGAGAAGCTGAGTCCGCCGCGGTTTGATCTGATCAATGACAGTCTAAGAGATAACTACGCTAAGTTG AACAGCTCCTCGAAGAAACCAATTGGGTCGCCTGCGGAAAAGAATGTGGAAGTTGAGACTGTGAGCAACAAAGGTAGAAGCAAGTTGGCTACAATGGGGG CCAGAAAGGAGGCTAAAGTTTCTCTTTCCCTCAGTGGAGCTACTGGTAATGGTGATTTGGAAGTTGAGGGTACTAAAGGACCTACTTTTAAAGACTTTGG TGGGATTAAGAAAATATTGGATGAATTGGAGATGAATGTTCTATTCCCCATTCTCAATCCTGAGCCGTTTAAGAAGATTGGAGTGAAGCCACCAAGTGGG ATTCTATTTCATGGACCACCTGGCTGTGGGAAGACTAAGTTGGCCAATGCCATTGCCAATGAAGCTGGTGTTCCGTTTTATAAGATTTCAGCCACAGAGG TGATTTCTGGTGTTTCTGgtaatgaattgcatatccatttgtccagtttgttgtggctccctctctgatcttattatcgttgtactaatccaatatgcaa attttgttctcagGTGCTTCTGAAGAGAATATCAGAGAGCTCTTTTCTAAAGCATATAGGACTGCGCCTTCGATTGTGTTTATCGATGAGATTGATGCGA TTGGTTCAAAGAGAGAGAATCAGCAAAGAGAGATGGAGAAGCGGATAGTAACACAATTGTTGACTTGTATGGATGGACCTGGTAACAAAGGCGATAAAAA TGCTCCTGATTCTAGTGCTGGTTTTGTTCTTGTCATTGGAGCTACAAATAGGCCTGATGCTCTTGATCCTGCTTTGAGGAGAAGTGGACGATTTGAAACT GAGATCGCTCTAACTGCTCCAGATGAAGACGCAAGGGCTGAGATACTCTCTGTTGTAGCCCAAAAACTTAGATTAGAAGGACCCTTTGACAAGAAAAGAA TAGCTCGTTTAACACCGGGTTTTGTTGGAGCTGATTTGGAGAGTGTTGCTTACTTGGCTGGCAGGAAAGCCATTAAGAGAATCTTGGATTCAAGGAAATC TGAACA►GTCTGGGGACGGTGAAGACGATAAATCT►TGGCTGAGGATGCCCTGGCCAGAAGAAGAGTTGGAAAAGCTCTTTGTCAAAATGTCTGATTTCG AGgtttgttaatggcaggggttatatggatctacttttctgttcttcaaaatttcctctttagttcctaacttctcttttatataccagGAAGCAGTGAA TCTAGTTCAGGCATCTTTAACAAGAGAAGGATTCTCTATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTTGACCATCTACGACTTCAATTCAAC CGTTATATAGTGAGGCCTATCAAAAAGCCTGATATTTATAAGgtactaaaaatcacatggcatcgttatatagtcaagattacttgcttgttctattgag gtctgaactgtctctttggatctttttagGCTTTTGGGGTAGACTTAGAGACAGGGTTTTTGCTCTATGGACCACCGGGTTGTGGCAAGACATTGATTGC AAAGGCAGCTGCTAACGAGGCTGGAGCTAAT◄TTCA◄TGCACATCAAGgtttgactttcacgtcagattttatgaatgttgctttgtatttgaatggtcc aaaataatgtgattttctctcttctatcgttgggctttcagGGTGCCGAACTTCTAAATAAATACGTTGGAGAAAGTGAGCTTGCTATTCGTACGTTGTT TCAGCGAGCTCGGACATGTGCACCATGTGTAATCTTCTTTGATGAGgttcgtttttaacattttgaactatatgacgaaaataagaccgatgtctatata tgcagacaataagatatgagattgagcaaacaaagtagatccatgtttgggttgatgcagcagtaagagctgtccgattcttgtccatgagtaatgtttt tgaatttcagGTGGATGCTTTGACAACAAGTCGTGGCAAAGAAGGTGCTTGGGTTGTTGAACGGCTTTTGAACCAGgtaataaacgcttattgaatggtg tagctgcacaatttagtcaggcattgatcaaatgcatttcgatgttccagTTTCTTGTTGAGCTGGATGGTGGAGAGAGGCGTAATGTATATGTAATTGG AGCTACAAACAGGCCAGATGTAGTTGATCCTGCTTTCTTGAGACCGGGTAGATTTGGGAATCTTCTTTATGTACCCCTCCCCAACGCAGATGAGCGTGCT TCAATTCTAAAAGCTATTGCAAGGAAGAAACCGATAGATCCTAGTGTTGATCTGGATGGAATTGCAAAGAATAACTGTGAAGGTTTCAGCGGAGCTGATC TCGCACACTTGgtaatcatcaacctcttttttactgctcttgtcgctgtgtttcttgaaacttgacatgacccatgttctgtaatgtacgtgattctgat tgttggtttcataaaatggaagGTGCAAAAAGCTACATTCCAAGCAGTGGAGGAGATGATAGGCTCCAGTGAGTCGTCTGAAGATGATGTTACAGATATA ACGCAGTGTACAATCAAGACGAGGCATTTCGAGCAAGCCTTGTCCTTAGTCTCACCATCTGTGAACAAACAGgtattctcttctctctgtttgcatcact gagagaaattgaaatttctatcgcctctcgtttagttggaaattaaacctcattttgatgggtttgcagCAAAGAAGACACTATGACGCACTATCAACAA AGCTTCAAGAAAGCGTTGGGAGGAACACTGAACAAGTCACCATAGGGCCATCTTTTACCCTCGAGTAAaaacactctttacttatagaatgtctgcaaaa tctcattttccaagggtagatacggtctttagttaaatataaagactcgtctgtttttctacttcagacacgtaatagaatcaagttatgtttccaactg ttcttatcggatccgtaacgctacaaaaattctgatactgtaagttgtatgtacagagatgagatagagaaagcgagaacaaaaagctaaagacaactag agggactgataagtggtaagtagaggtcctttatttatcagccagattctcgtttgcagttcccaggtaataagtacttgtagctatcagcattctgaat caagtatccagggagatgaacagctgaataagaccgtggaatcggaccaagtttgccgataatctccctgaatgtgtgttcttcaggaagcatatcgaaa agat
Border_1 (14610_1_LBU)
AAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTGGGAACTCCANACTCGACANANNNTGGCTGAGG
ATGCCCTGGCCCGAGGAAGAGTTGGAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGTTTGTTAATGGCAGGGGTTATATGGATCTACTTTTCTGTTCT
TCAAAATTTCCCCTTCAACTCCAAACTNG
| Start of BLAST Alignment: | NT 1513 / Exon 2 of 9 |
| First 15 bp Perfect Match: | NT 1541 / Exon 2 of 9 |
BLAST Details: Query Sequence: 14610_1_LBU Length: (229 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g01610 68416.t00083 AAA-type ATPase family protein con... 650 1.2e-23 1 At1g16550 68414.t01769 pseudogene, putative cell division... 426 1.6e-13 1 At3g15560 68416.t01749 expressed protein 138 0.87 1 At2g19930 68415.t02210 RNA-dependent RNA polymerase famil... 136 0.94 1 >At3g01610 68416.t00083 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 3539 Plus Strand HSPs: Score = 650 (103.6 bits), Expect = 1.2e-23, P = 1.2e-23 Identities = 144/164 (87%), Positives = 144/164 (87%), Strand = Plus / Plus Query: 64 GTCTGGGAACTCCANACTCGACANANNNTGGCTGAGGATGCCCTGGCCCGAGGAAGAGTT 123 ||||||| || | ||| | | |||||||||||||||||||| || |||||||| Sbjct: 1650 GTCTGGGGACGGTGAAGACGATAAATCTTGGCTGAGGATGCCCTGGCCAGAAGAAGAGTT 1709 Query: 124 GGAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGTTTGTTAATGGCAGGGGTTATATGG 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1710 GGAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGTTTGTTAATGGCAGGGGTTATATGG 1769 Query: 184 ATCTACTTTTCTGTTCTTCAAAATTTCCCCTTCAACTCCAAACT 227 |||||||||||||||||||||||||||| ||| | ||| |||| Sbjct: 1770 ATCTACTTTTCTGTTCTTCAAAATTTCCTCTTTAGTTCCTAACT 1813 >At1g16550 68414.t01769 pseudogene, putative cell division cycle protein blastp match of 53% identity and 2.4e-136 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) {Oryza sativa (japonica cultivar-group)} Length = 2303 Plus Strand HSPs: Score = 426 (70.0 bits), Expect = 1.6e-13, P = 1.6e-13 Identities = 112/145 (77%), Positives = 112/145 (77%), Strand = Plus / Plus
Border_2 (14610_1_RBD)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
CGTC:CA:AGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGTGTTAACAAATTTCAATGGGTTAGTCAATTTGTTATTAGCTCCAGCCTCGTTAGCAGCTGCCTTTGCAATCAATGTCTTGCCACAACCCGGTGGTCC
ATAGAGCAAAAACCCTGTCTCTAAGTCTACCCCAAAAGCCTAAAAAGATCCAAAGAGACAGTTCAGACCTCAATAGAACAAGCAAGTAATCTTGACTATA
TAACGATGCCATGTGATTTTTAGTACCTTATAAATATCAGGCTTTTTGATAGGCCTCACTATATAACGGTTGAATTGAAGTCGTAGATGGTCAAGTCCAC
CAACATCATCCCACTTGACATCAGGCACGATAGAGAATCCTTCTCTTGTTAAAGATGCCTGAACTAGATTCACTGCTTCCTGGTATATAAAAGAGAAGTT
AGGAACTAAAGAGGAAATTTTGAAGAACAGAAAAGTAGATCCATATAACCCCTGCCATTAACAAACCTCGAAATCAGACATTTTGACAAAGAGCTTTTTC
AACTCTTCTTCTGGCCAGGGCATCCTCAGCCAAGATTTATCGTCTTCACCGTCCCCAGACTGGTCAGATTTCCTTGAATCCAAGATTCTCTTAATGGCTT
TCCTGCCAGCCAAGTAAGCAACACTCTCCAAA
| Start of BLAST Alignment: | NT 2040 / Exon 4 of 9 |
| First 15 bp Perfect Match: | NT 2036 / Exon 4 of 9 |
BLAST Details: Query Sequence: 14610_1_RBD Length: (830 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g01610 68416.t00083 AAA-type ATPase family protein con... 2959 1.7e-129 1 At1g16550 68414.t01769 pseudogene, putative cell division... 1484 1.1e-62 1 At1g19810 68414.t02217 pseudogene, putative cell division... 298 2.5e-10 2 At3g53230 68416.t05452 cell division cycle protein 48, pu... 226 0.093 1 >At3g01610 68416.t00083 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 3539 Minus Strand HSPs: Score = 2959 (450.0 bits), Expect = 1.7e-129, P = 1.7e-129 Identities = 595/599 (99%), Positives = 595/599 (99%), Strand = Minus / Plus Query: 830 TTTGGAGAGTGTTGCTTACTTGGCTGGCAGGAAAGCCATTAAGAGAATCTTGGATTCAAG 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1578 TTTGGAGAGTGTTGCTTACTTGGCTGGCAGGAAAGCCATTAAGAGAATCTTGGATTCAAG 1637 Query: 770 GAAATCTGACCAGTCTGGGGACGGTGAAGACGATAAATCTTGGCTGAGGATGCCCTGGCC 711 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1638 GAAATCTGAACAGTCTGGGGACGGTGAAGACGATAAATCTTGGCTGAGGATGCCCTGGCC 1697 Query: 710 AGAAGAAGAGTTGAAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGTTTGTTAATGGCA 651 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1698 AGAAGAAGAGTTGGAAAAGCTCTTTGTCAAAATGTCTGATTTCGAGGTTTGTTAATGGCA 1757 Query: 650 GGGGTTATATGGATCTACTTTTCTGTTCTTCAAAATTTCCTCTTTAGTTCCTAACTTCTC 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1758 GGGGTTATATGGATCTACTTTTCTGTTCTTCAAAATTTCCTCTTTAGTTCCTAACTTCTC 1817 Query: 590 TTTTATATACCAGGAAGCAGTGAATCTAGTTCAGGCATCTTTAACAAGAGAAGGATTCTC 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1818 TTTTATATACCAGGAAGCAGTGAATCTAGTTCAGGCATCTTTAACAAGAGAAGGATTCTC 1877 Query: 530 TATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTTGACCATCTACGACTTCAATT 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1878 TATCGTGCCTGATGTCAAGTGGGATGATGTTGGTGGACTTGACCATCTACGACTTCAATT 1937 Query: 470 CAACCGTTATATAGTGAGGCCTATCAAAAAGCCTGATATTTATAAGGTACTAAAAATCAC 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1938 CAACCGTTATATAGTGAGGCCTATCAAAAAGCCTGATATTTATAAGGTACTAAAAATCAC 1997 Query: 410 ATGGCATCGTTATATAGTCAAGATTACTTGCTTGTTCTATTGAGGTCTGAACTGTCTCTT 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1998 ATGGCATCGTTATATAGTCAAGATTACTTGCTTGTTCTATTGAGGTCTGAACTGTCTCTT 2057 Query: 350 TGGATCTTTTTAGGCTTTTGGGGTAGACTTAGAGACAGGGTTTTTGCTCTATGGACCACC 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2058 TGGATCTTTTTAGGCTTTTGGGGTAGACTTAGAGACAGGGTTTTTGCTCTATGGACCACC 2117 Query: 290 GGGTTGTGGCAAGACATTGATTGCAAAGGCAGCTGCTAACGAGGCTGGAGCTAATAACA 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 2118 GGGTTGTGGCAAGACATTGATTGCAAAGGCAGCTGCTAACGAGGCTGGAGCTAATTTCA 2176 >At1g16550 68414.t01769 pseudogene, putative cell division cycle protein blastp match of 53% identity and 2.4e-136 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) {Oryza sativa (japonica cultivar-group)} Length = 2303 Minus Strand HSPs: Score = 1484 (228.7 bits), Expect = 1.1e-62, P = 1.1e-62 Identities = 330/367 (89%), Positives = 330/367 (89%), Strand = Minus / Plus